def test_gmap_transformed():
dem = GeoTiff(get_demo_file('hef_srtm.tif'))
dem.set_subset(margin=-100)
dem = mercator_grid(center_ll=(10.76, 46.798444),
extent=(10000, 7000))
i, j = dem.ij_coordinates
g = GoogleVisibleMap(x=i, y=j, crs=dem, size_x=500, size_y=400)
img = g.get_vardata()
m = Map(dem, countries=False)
with pytest.raises(ValueError):
m.set_data(img)
m.set_lonlat_contours(interval=0.025)
m.set_shapefile(get_demo_file('Hintereisferner.shp'),
linewidths=2, edgecolor='darkred')
m.set_rgb(img, g.grid)
fig, ax = plt.subplots(1, 1)
m.visualize(ax=ax, addcbar=False)
plt.tight_layout()
return fig
def test_gmap_transformed():
dem = GeoTiff(get_demo_file('hef_srtm.tif'))
dem.set_subset(margin=-100)
dem = mercator_grid(center_ll=(10.76, 46.798444), extent=(10000, 7000))
i, j = dem.ij_coordinates
g = GoogleVisibleMap(x=i, y=j, crs=dem, size_x=500, size_y=400)
img = g.get_vardata()
m = Map(dem, countries=False)
with pytest.raises(ValueError):
m.set_data(img)
m.set_lonlat_contours(interval=0.025)
m.set_shapefile(get_demo_file('Hintereisferner.shp'),
linewidths=2,
edgecolor='darkred')
m.set_rgb(img, g.grid)
fig, ax = plt.subplots(1, 1)
m.visualize(ax=ax, addcbar=False)
plt.tight_layout()
return fig
def _plot_city(self, ds):
"""Plot the results of gyms in a city.
Parameters
----------
self.ds_sorted : xr.Dataset
xr.Dataset with Coordinates: gyms.
Returns
-------
matplotlib.pyplot.figure : matplotlib.pyplot.figure
Creates city plot.
"""
# Create extend of map [W, E, S, N]
extent = [ds['longitude'].values.min(), ds['longitude'].values.max(),
ds['latitude'].values.min(), ds['latitude'].values.max()]
# Setup colors
colors = cm.nipy_spectral(np.linspace(0,1,len(ds['gyms'])))
# Get google map. Scale is for more details. Mapytype can have
# 'terrain' or 'satellite'
g = GoogleVisibleMap(x=[extent[0], extent[1]], y=[extent[2],
extent[3]], scale=4, maptype='terrain')
ggl_img = g.get_vardata()
# Plot map
fig, ax = plt.subplots(1, 1, figsize=(20,20))
sm = Map(g.grid, factor=1, countries=False)
sm.set_rgb(ggl_img)
sm.visualize(ax=ax)
# Plot gym points
for i in range(0, len(ds['gyms'])):
# Create label
self.regcount = i
self._rank() # Add self.rank
_label = self.rank+' '+ds['gyms'].values[i]+': '+\
ds['athlete_names'].values[i]+' ('+str(ds[self.how].values[i])+')'
x, y = sm.grid.transform(ds['longitude'].values[i],
ds['latitude'].values[i])
ax.scatter(x, y, color=colors[i], s=400, label=_label)
plt.title(self.fname+' | '+self.city+' | '+self.column+' | '+self.how)
# Shrink current axis by 20% to make room for legend
box = ax.get_position()
ax.set_position([box.x0, box.y0, box.width * 0.8, box.height])
ax.legend(loc='center left', bbox_to_anchor=(1, 0.5))
plt.savefig(self.plotdir+self.fname+'_'+self.city+'_'+self.column+'_'+\
self.how+'.png', bbox_inches = 'tight')
#plt.savefig(self.plotdir+self.fname+'_'+self.city+'_'+self.column+\
# self.how+'.png', bbox_inches = 'tight', format='eps')
plt.show()
def main(argc, argv):
country = 'NGA'
fig, (ax1, ax2, ax3, ax4) = plt.subplots(1, 4, figsize=(15, 10))
cmap = plt.cm.magma
bbox = box(3.35-0.1, 6.5-0.1, 3.35+0.1, 6.5+0.1)
geo = gpd.GeoDataFrame({'geometry': bbox}, index=[0], crs='EPSG:4326')
coords = geo['geometry']
# Worldpop:
wp_file = os.path.join(get_project_path(), "data/worldpop", '%s/%s_ppp_2015.tif' % (country, country.lower()))
with rasterio.open(wp_file) as pop:
X = pop.read(1)
out_img, out_transform = mask.mask(pop, coords, crop=True)
pop_wp = np.float32(out_img[0].copy())
pop_wp[np.where(pop_wp==-99999)] = 0
im1 = ax1.imshow(pop_wp, cmap=cmap, norm=LogNorm())
# Humdata:
fb_file = os.path.join(get_project_path(), "data/humdata", '%s/population_%s_2018-10-01.tif' % (country, country.lower()))
with rasterio.open(fb_file) as pop:
X = pop.read(1)
out_img, out_transform = mask.mask(pop, coords, crop=True)
pop_fb = np.float32(out_img[0].copy())
im2 = ax2.imshow(pop_fb, cmap=cmap, norm=LogNorm())
# GRID3:
grid_file = os.path.join(get_project_path(), "data/grid", '%s/%s_population.tif' % (country, country.lower()))
with rasterio.open(grid_file) as pop:
X = pop.read(1)
sum = np.mean(X)
out_img, out_transform = mask.mask(pop, coords, crop=True)
pop_fb = np.float32(out_img[0].copy())
im3 = ax3.imshow(pop_fb, cmap=cmap, norm=LogNorm())
# Satelite:
g = GoogleVisibleMap(x=[3.35-0.1, 3.35+0.1], y=[6.5-0.1, 6.5+0.1],
size_x = 500, size_y = 500,
#size_x=img_arr1.shape[0], size_y=img_arr1.shape[1],
scale=4, # scale is for more details
maptype='satellite'
) # try out also: 'terrain'
ggl_img = g.get_vardata()
ax4.imshow(ggl_img)
plt.show()
return 0
if not (row['Indice_Corregido'] in indexes):
indexes.append(row['Indice_Corregido'])
lats.append(row['Latitud_Centro'])
longs.append((row['Longitud_Centro']))
new_df = pd.DataFrame({'Indice': indexes, 'Latitud': lats, 'Longitud': longs})
new_df['Ubicacion'] = new_df.agg(
'https://www.google.com/maps/search/?api=1&query={0[Latitud]},{0[Longitud]}'
.format,
axis=1)
new_df.sort_values(by=['Indice'], inplace=True)
new_df.to_csv('Indices.csv', index=False)
g = GoogleVisibleMap(
x=[-76.533, -76.525],
y=[3.340, 3.375],
scale=2, # scale is for more details
maptype='roadmap')
f, ax = plt.subplots(1, figsize=(12, 12))
ggl_img = g.get_vardata()
sm = Map(g.grid, factor=1, countries=False)
sm.set_rgb(ggl_img)
sm.visualize(ax=ax)
n = new_df['Indice'].to_numpy()
x = new_df['Longitud'].to_numpy()
y = new_df['Latitud'].to_numpy()
tipo = 'OUTDOOR'
dist = np.asarray(dist)
dist = dist.reshape((-1,2))
a = a[:,4:]
a = a.reshape((-1,(npart * n_levels)))
min_x = np.amin(lon_stag)
max_x = np.amax(lon_stag)
min_y = np.amin(lat_stag)
max_y = np.amax(lat_stag)
g = GoogleVisibleMap(x=[min_x, max_x], y=[min_y, max_y],
scale=2, # scale is for more details
maptype='hybrid') # try out also: 'terrain,hybrid'
ggl_img = g.get_vardata()
column = 0
header = "ncols %s\n" % loading2D.shape[1]
header += "nrows %s\n" % loading2D.shape[0]
header += "xllcorner " + str(lon_stag[0]) +"\n"
header += "yllcorner " + str(lat_stag[1]) +"\n"
header += "cellsize " + str(spacing_lat) +"\n"
header += "NODATA_value 0"
for i in range(npart):
"""
import numpy as np
import pandas as pd
import salem
from salem import get_demo_file, DataLevels, GoogleVisibleMap, Map
import matplotlib.pyplot as plt
# prepare the figure
f, (ax1, ax2) = plt.subplots(1, 2, figsize=(12, 5))
# read the shapefile and use its extent to define a ideally sized map
shp = salem.read_shapefile(get_demo_file('rgi_kesselwand.shp'))
# I you need to do a lot of maps you might want
# to use an API key and set it here with key='YOUR_API_KEY'
g = GoogleVisibleMap(x=[shp.min_x, shp.max_x], y=[shp.min_y, shp.max_y],
maptype='satellite') # try out also: 'terrain'
# the google static image is a standard rgb image
ggl_img = g.get_vardata()
ax1.imshow(ggl_img)
ax1.set_title('Google static map')
# make a map of the same size as the image (no country borders)
sm = Map(g.grid, factor=1, countries=False)
sm.set_shapefile(shp) # add the glacier outlines
sm.set_rgb(ggl_img) # add the background rgb image
sm.visualize(ax=ax2) # plot it
ax2.set_title('GPR measurements')
# read the point GPR data and add them to the plot
df = pd.read_csv(get_demo_file('gtd_ttt_kesselwand.csv'))
import numpy as np
import pandas as pd
import salem
from salem import get_demo_file, DataLevels, GoogleVisibleMap, Map
import matplotlib.pyplot as plt
# prepare the figure
f, (ax1, ax2) = plt.subplots(1, 2, figsize=(12, 5))
# read the shapefile and use its extent to define a ideally sized map
shp = salem.read_shapefile(get_demo_file('rgi_kesselwand.shp'))
# I you need to do a lot of maps you might want
# to use an API key and set it here with key='YOUR_API_KEY'
g = GoogleVisibleMap(x=[shp.min_x, shp.max_x],
y=[shp.min_y, shp.max_y],
maptype='satellite') # try out also: 'terrain'
# the google static image is a standard rgb image
ggl_img = g.get_vardata()
ax1.imshow(ggl_img)
ax1.set_title('Google static map')
# make a map of the same size as the image (no country borders)
sm = Map(g.grid, factor=1, countries=False)
sm.set_shapefile(shp) # add the glacier outlines
sm.set_rgb(ggl_img) # add the background rgb image
sm.set_scale_bar(location=(0.88, 0.94)) # add scale
sm.visualize(ax=ax2) # plot it
ax2.set_title('GPR measurements')
import numpy as np
import pandas as pd
import salem
from salem import get_demo_file, DataLevels, GoogleVisibleMap, Map
import matplotlib.pyplot as plt
# prepare the figure
f, (ax1, ax2) = plt.subplots(1, 2, figsize=(12, 5))
# read the shapefile and use its extent to define a ideally sized map
shp = salem.read_shapefile(get_demo_file('rgi_kesselwand.shp'))
# I you need to do a lot of maps you might want
# to use an API key and set it here with key='YOUR_API_KEY'
g = GoogleVisibleMap(
x=[shp.min_x, shp.max_x],
y=[shp.min_y, shp.max_y],
scale=2, # scale is for more details
maptype='satellite') # try out also: 'terrain'
# the google static image is a standard rgb image
ggl_img = g.get_vardata()
ax1.imshow(ggl_img)
ax1.set_title('Google static map')
# make a map of the same size as the image (no country borders)
sm = Map(g.grid, factor=1, countries=False)
sm.set_shapefile(shp) # add the glacier outlines
sm.set_rgb(ggl_img) # add the background rgb image
sm.set_scale_bar(location=(0.88, 0.94)) # add scale
sm.visualize(ax=ax2) # plot it
ax2.set_title('GPR measurements')
from pathlib import Path
from salem import get_demo_file, DataLevels, GoogleVisibleMap, Map
import matplotlib.pyplot as plt
data_dir = Path("/Volumes/Lees_Extend/data/ecmwf_sowc/")
path = data_dir / "chirps_kenya.nc"
ds = xr.open_dataset(path, decode_times=False)
times = pd.date_range("1900-01-01", "2019-12-31", freq="M")
ds["time"] = times
da = ds.precip
# sds = salem.open_xr_dataset(path, **dict(decode_times=False))
fig, ax = plt.subplots()
map_ = da.mean(dim="time").salem.quick_map(ax=ax)
map_
# conda install -c motionless
# prepare the figure
f, (ax1, ax2) = plt.subplots(1, 2, figsize=(12, 5))
# read the shapefile and use its extent to define a ideally sized map
shp = salem.read_shapefile(get_demo_file("rgi_kesselwand.shp"))
g = GoogleVisibleMap(
x=[shp.min_x, shp.max_x],
y=[shp.min_y, shp.max_y],
scale=2, # scale is for more details
maptype="satellite",
) # try out also: 'terrain'
def spatial_bin_plot(self,
category,
quantity,
bin_step=20,
color='viridis'):
# scale Dimension
scaleDim = 5
# Binning base on spatial
data = self.data
# filter the data by category
data = data[data[self.ccategorical].isin(category)]
# This maximum constant is what we can get from
# the google map static image
# greater or lower than these can produce error
maxconst = (-86.82743293, 86.92841107, -176.1111116, 176.4292565)
minlat = data[self.clatitude].min(
) if data[self.clatitude].min() > maxconst[0] else maxconst[0]
maxlat = data[self.clatitude].max(
) if data[self.clatitude].max() < maxconst[1] else maxconst[1]
minlong = data[self.clongitude].min(
) if data[self.clongitude].min() > maxconst[2] else maxconst[2]
maxlong = data[self.clongitude].max(
) if data[self.clongitude].max() < maxconst[3] else maxconst[3]
#print(minlat,maxlat,minlong,maxlong)
g = GoogleVisibleMap(
x=[minlong, maxlong], y=[minlat, maxlat],
maptype='terrain') # satellitetry out also: 'terrain'
# the google static image is a standard rgb image
ggl_img = g.get_vardata()
#ax.imshow(ggl_img)
# make a map of the same size as the image (no country borders)
sm = Map(g.grid, factor=1, countries=False)
sm.set_rgb(ggl_img) # add the background rgb image
#print(minlat,maxlat,minlong,maxlong)
# make range for Latitude
# set step
xstep = bin_step
ystep = bin_step
latBin = np.linspace(data[self.clatitude].min(),
data[self.clatitude].max(), xstep)
longBin = np.linspace(data[self.clongitude].min(),
data[self.clongitude].max(), ystep)
#logger.debug(latBin)
#print(longBin)
quantBinArr = []
quantmeanArr = []
quantsumArr = []
latStepLen = latBin[1] - latBin[0]
longStepLen = longBin[1] - longBin[0]
#treesWithoutVacant = trees.filter_ne('Tree Species','vacant site large')
for x in range(latBin.size):
if (x < latBin.size - 1):
latSelMin = latBin[x] if latBin[x] < latBin[x +
1] else latBin[x +
1]
latSelMax = latBin[x] if latBin[x] > latBin[x +
1] else latBin[x +
1]
#latData = data[(data['latitude']>latBin[x])&(data['latitude']<=latBin[x+1])]
latData = data[(data[self.clatitude] > latSelMin)
& (data[self.clatitude] <= latSelMax)]
latmean = latSelMin + (latStepLen / 2)
for y in range(longBin.size):
if (y < longBin.size - 1):
lonSelMin = longBin[y] if longBin[y] < longBin[
y + 1] else longBin[y + 1]
lonSelMax = longBin[y] if longBin[y] > longBin[
y + 1] else longBin[y + 1]
#print(lonSelMin,lonSelMax)
#print((latData['longitude']>lonSelMin)&(latData['longitude']<=lonSelMax))
#areaData = latData[(latData['longitude']>longBin[y])&latData['longitude']<longBin[y+1]]
areaData = latData[
(latData[self.clongitude] > lonSelMin)
& (latData[self.clongitude] <= lonSelMax)]
#print(areaData.shape)
# group the areaData by category to get the mean and sum category
meanCat = areaData.groupby(
self.ccategorical)[quantity].mean().sort_values(
ascending=False)
sumCat = areaData.groupby(
self.ccategorical)[quantity].sum().sort_values(
ascending=False)
"""
# get mean for the quantity area bin
quantmean = areaData[quantity].mean()
quantsum = areaData[quantity].sum()
"""
if areaData.shape[0] > 0:
longmean = lonSelMin + (longStepLen / 2)
quantmeanArr.append(meanCat.max())
quantsumArr.append(sumCat.max())
#print(meanCat)
#print(sumCat)
quantBinArr.append({
'lat': latmean,
'long': longmean,
'mean': meanCat,
'sum': sumCat
})
"""
quantmeanArr.append(quantmean)
quantsumArr.append(quantsum)
longmean = (longBin[y]+longBin[y+1])/2
quantBinArr.append({'lat': latmean, 'long': longmean, 'quantmean': quantmean, 'quantsum': quantsum})
"""
dataFig = plt.figure(figsize=(15, 15))
loc_ax = dataFig.add_subplot(1, 1, 1)
sm.visualize(ax=loc_ax) # plot it
# loc_ax.set_title('Distribution of Most Common Trees accross Spatial Binning: {}x{} square'.format(xstep,ystep))
loc_ax.set_xlabel('Longitude')
loc_ax.set_ylabel('Latitude')
minMean = np.array(quantmeanArr).min()
maxMean = np.array(quantmeanArr).max()
# calculate the scale
# we scale it using 8 level
scale = (maxMean - minMean) / scaleDim
#define color representation for each category
cm = plt.get_cmap(color)
colorArr = {}
norm = mpl.colors.Normalize(vmin=0, vmax=len(category))
patch_array = []
for i in range(len(category)):
color = cm(norm(i))
colorArr[category[i]] = color
patch_array.append(
mpl.patches.Patch(color=color, label=category[i]))
for quantBin in quantBinArr:
x, y = sm.grid.transform(quantBin['long'], quantBin['lat'])
scatter = loc_ax.scatter(x,
y,
s=(quantBin['mean'].values[0] / scale) *
(longStepLen / 2) * scaleDim,
c=colorArr[quantBin['mean'].index[0]],
alpha=.75,
edgecolors='none')
#tooltip = plugins.PointHTMLTooltip(scatter, ['test'])
#plugins.connect(dataFig, tooltip)
scale_array = []
scale_label = []
# Make scale legend
for i in range(scaleDim):
#patch_array.append(mpl.patches.Patch(color='none',label=i,))
label = '{0:.2f} < x <= {1:.2f}'.format(
minMean + (scale * i), minMean + (scale * (i + 1)))
scatter = plt.scatter([], [],
s=(i + 1) * (longStepLen / 2) * scaleDim,
marker='o',
label=label,
color='grey')
#scatter = plt.plot([],[],markersize=(i+1)/scaleDim,marker='o',label=label)
scale_array.append(scatter)
scale_label.append(label)
#patch_array.append(scatter.get_patches())
#patch_array.append(mpl.lines.Line2D([],[],markersize=(i+1)/scaleDim,marker='o',label=label))
# Legend and Title
#legend2 = mpl.pyplot.legend(handles=scale_array, loc=1)
legend2 = mpl.pyplot.legend(scale_array,
scale_label,
scatterpoints=1,
loc='upper right',
ncol=1,
bbox_to_anchor=(1, 1)
#,fontsize=8
)
#[ patch_array.append(x) for x in legend2.get_patches() ]
#legend1 = mpl.pyplot.legend(handles=patch_array, loc=4,bbox_to_anchor=(1, 0.5))
loc_ax.legend(handles=patch_array,
loc='center left',
bbox_to_anchor=(1, 0.5))
mpl.pyplot.gca().add_artist(legend2)
loc_ax.set_title('Quantity {} across Spatial Bining'.format(quantity))
#mpld3.enable_notebook()
return None