def _create_state_objs(self, data_info):
self.adjustment = StateAdjustment()
self.compatibility = StateCompatibility()
self.convert_to_q = StateConvertToQ()
self.calculate_transmission = get_calculate_transmission(
instrument=self.instrument)
self.mask = get_mask_builder(data_info=data_info).build()
self.move = get_move_builder(data_info=data_info).build()
self.normalize_to_monitor = get_normalize_to_monitor_builder(
data_info=data_info).build()
self.reduction_mode = StateReductionMode()
self.scale = StateScale()
self.wavelength = StateWavelength()
self.wavelength_and_pixel = get_wavelength_and_pixel_adjustment_builder(
data_info=data_info).build()
# Ensure they are linked up correctly
self.adjustment.calculate_transmission = self.calculate_transmission
self.adjustment.normalize_to_monitor = self.normalize_to_monitor
self.adjustment.wavelength_and_pixel_adjustment = self.wavelength_and_pixel
def _get_state(
transmission_radius_on_detector=None,
transmission_roi_files=None,
transmission_mask_files=None, # noqa: C901
transmission_monitor=None,
incident_monitor=None,
rebin_type=None,
wavelength_low=None,
wavelength_high=None,
wavelength_step=None,
wavelength_step_type=None,
use_full_wavelength_range=None,
prompt_peak_correction_min=None,
prompt_peak_correction_max=None,
background_TOF_general_start=None,
background_TOF_general_stop=None,
background_TOF_monitor_start=None,
background_TOF_monitor_stop=None,
background_TOF_roi_start=None,
background_TOF_roi_stop=None,
sample_fit_type=None,
sample_polynomial_order=None,
sample_wavelength_low=None,
sample_wavelength_high=None,
can_fit_type=None,
can_polynomial_order=None,
can_wavelength_low=None,
can_wavelength_high=None):
test_director = TestDirector()
state = test_director.construct()
instrument = state.data.instrument
calculate_transmission_obj = get_calculate_transmission(instrument)
if transmission_radius_on_detector:
calculate_transmission_obj.transmission_radius_on_detector = transmission_radius_on_detector
if transmission_roi_files:
calculate_transmission_obj.transmission_roi_files = transmission_roi_files
if transmission_mask_files:
calculate_transmission_obj.transmission_mask_files = transmission_mask_files
if transmission_monitor:
calculate_transmission_obj.transmission_monitor = transmission_monitor
if incident_monitor:
calculate_transmission_obj.incident_monitor = incident_monitor
if rebin_type:
calculate_transmission_obj.rebin_type = rebin_type
if wavelength_low and wavelength_high:
wavelength_range = (wavelength_low, wavelength_high)
calculate_transmission_obj.wavelength_interval.wavelength_full_range = wavelength_range
calculate_transmission_obj.wavelength_interval.selected_ranges = [
wavelength_range
]
if wavelength_step:
calculate_transmission_obj.wavelength_interval.wavelength_step = wavelength_step
if wavelength_step_type:
calculate_transmission_obj.wavelength_step_type = wavelength_step_type
if use_full_wavelength_range:
calculate_transmission_obj.use_full_wavelength_range = use_full_wavelength_range
if prompt_peak_correction_min:
calculate_transmission_obj.prompt_peak_correction_min = prompt_peak_correction_min
if prompt_peak_correction_max:
calculate_transmission_obj.prompt_peak_correction_max = prompt_peak_correction_max
if prompt_peak_correction_min and prompt_peak_correction_max:
calculate_transmission_obj.prompt_peak_correction_enabled = True
if background_TOF_general_start:
calculate_transmission_obj.background_TOF_general_start = background_TOF_general_start
if background_TOF_general_stop:
calculate_transmission_obj.background_TOF_general_stop = background_TOF_general_stop
if background_TOF_monitor_start:
calculate_transmission_obj.background_TOF_monitor_start = background_TOF_monitor_start
if background_TOF_monitor_stop:
calculate_transmission_obj.background_TOF_monitor_stop = background_TOF_monitor_stop
if background_TOF_roi_start:
calculate_transmission_obj.background_TOF_roi_start = background_TOF_roi_start
if background_TOF_roi_stop:
calculate_transmission_obj.background_TOF_roi_stop = background_TOF_roi_stop
if sample_fit_type:
calculate_transmission_obj.set_sample_fit_type(sample_fit_type)
if sample_polynomial_order:
calculate_transmission_obj.set_sample_polynomial_order(
sample_polynomial_order)
if sample_wavelength_low:
calculate_transmission_obj.set_sample_wavelength_low(
sample_wavelength_low)
if sample_wavelength_high:
calculate_transmission_obj.set_sample_wavelength_high(
sample_wavelength_high)
if can_fit_type:
calculate_transmission_obj.set_can_fit_type(can_fit_type)
if can_polynomial_order:
calculate_transmission_obj.set_can_polynomial_order(
can_polynomial_order)
if can_wavelength_low:
calculate_transmission_obj.set_can_wavelength_low(
can_wavelength_low)
if can_wavelength_high:
calculate_transmission_obj.set_can_wavelength_high(
can_wavelength_high)
state.adjustment.calculate_transmission = calculate_transmission_obj
return state
def construct(self):
facility = SANSFacility.ISIS
file_information = SANSFileInformationMock(run_number=22024, instrument=SANSInstrument.SANS2D)
# Build the SANSStateData
if self.data_state is None:
data_builder = get_data_builder(facility, file_information)
data_builder.set_sample_scatter("SANS2D00022024")
data_builder.set_can_scatter("SANS2D00022024")
self.data_state = data_builder.build()
# Build the SANSStateMove
if self.move_state is None:
move_builder = get_move_builder(self.data_state)
if hasattr(move_builder, "set_HAB_x_translation_correction"):
move_builder.set_HAB_x_translation_correction(21.2)
move_builder.set_LAB_x_translation_correction(12.1)
self.move_state = move_builder.build()
if self.inst_info_state is None:
self.inst_info_state = StateInstrumentInfo.build_from_data_info(self.data_state)
# Build the SANSStateReduction
if self.reduction_state is None:
state_reduction = StateReductionMode()
state_reduction.reduction_dimensionality = ReductionDimensionality.ONE_DIM
state_reduction.merge_fit_mode = FitModeForMerge.BOTH
state_reduction.merge_shift = 324.2
state_reduction.merge_scale = 3420.98
state_reduction.reduction_mode = ReductionMode.MERGED
self.reduction_state = state_reduction
# Build the SANSStateSliceEvent
if self.slice_state is None:
slice_builder = get_slice_event_builder(self.data_state)
slice_builder.set_start_time([0.1, 1.3])
slice_builder.set_end_time([0.2, 1.6])
self.slice_state = slice_builder.build()
# Build the SANSStateMask
if self.mask_state is None:
mask_builder = get_mask_builder(self.data_state)
mask_builder.set_radius_min(10.0)
mask_builder.set_radius_max(20.0)
self.mask_state = mask_builder.build()
# Build the SANSStateWavelength
if self.wavelength_state is None:
wavelength_builder = get_wavelength_builder(self.data_state)
wavelength_range = (1.0, 10.0)
wavelength_builder.state.wavelength_interval.wavelength_full_range = wavelength_range
wavelength_builder.state.wavelength_interval.selected_ranges = [wavelength_range]
wavelength_builder.set_wavelength_step_type(RangeStepType.LIN)
wavelength_builder.set_rebin_type(RebinType.REBIN)
self.wavelength_state = wavelength_builder.build()
# Build the SANSStateSave
if self.save_state is None:
save_builder = get_save_builder(self.data_state)
save_builder.set_user_specified_output_name("test_file_name")
save_builder.set_file_format([SaveType.NEXUS])
self.save_state = save_builder.build()
# Build the SANSStateScale
if self.scale_state is None:
scale_builder = get_scale_builder(self.data_state, file_information)
scale_builder.set_shape(SampleShape.FLAT_PLATE)
scale_builder.set_width(1.0)
scale_builder.set_height(2.0)
scale_builder.set_thickness(3.0)
scale_builder.set_scale(4.0)
self.scale_state = scale_builder.build()
instrument = self.data_state.instrument
# Build the SANSAdjustmentState
if self.adjustment_state is None:
# NormalizeToMonitor
normalize_to_monitor_builder = get_normalize_to_monitor_builder(self.data_state)
wavelength_range = (1.0, 10.0)
normalize_to_monitor_builder.state.wavelength_interval.wavelength_full_range = wavelength_range
normalize_to_monitor_builder.state.wavelength_interval.selected_ranges = [wavelength_range]
normalize_to_monitor_builder.state.wavelength_interval.wavelength_step = 2.0
normalize_to_monitor_builder.set_wavelength_step_type(RangeStepType.LIN)
normalize_to_monitor_builder.set_rebin_type(RebinType.REBIN)
normalize_to_monitor_builder.set_background_TOF_general_start(1000.)
normalize_to_monitor_builder.set_background_TOF_general_stop(2000.)
normalize_to_monitor_builder.set_incident_monitor(1)
normalize_to_monitor = normalize_to_monitor_builder.build()
# CalculateTransmission
calculate_transmission_obj = get_calculate_transmission(instrument=instrument)
calculate_transmission_obj.transmission_monitor = 3
calculate_transmission_obj.incident_monitor = 2
wavelength_range = (1.0, 10.0)
calculate_transmission_obj.wavelength_interval.wavelength_full_range = wavelength_range
calculate_transmission_obj.wavelength_interval.selected_ranges = [wavelength_range]
calculate_transmission_obj.wavelength_interval.wavelength_step = 2.0
calculate_transmission_obj.wavelength_step_type = RangeStepType.LIN
calculate_transmission_obj.rebin_type = RebinType.REBIN
calculate_transmission_obj.background_TOF_general_start = 1000.
calculate_transmission_obj.background_TOF_general_stop = 2000.
calculate_transmission_obj.set_sample_fit_type(FitType.LINEAR)
calculate_transmission_obj.set_sample_polynomial_order(0)
calculate_transmission_obj.set_sample_wavelength_low(1.0)
calculate_transmission_obj.set_sample_wavelength_high(10.0)
calculate_transmission_obj.set_can_fit_type(FitType.POLYNOMIAL)
calculate_transmission_obj.set_can_polynomial_order(3)
calculate_transmission_obj.set_can_wavelength_low(10.0)
calculate_transmission_obj.set_can_wavelength_high(20.0)
# Wavelength and pixel adjustment
wavelength_and_pixel_builder = get_wavelength_and_pixel_adjustment_builder(self.data_state)
wavelength_range = (1.0, 10.0)
wavelength_and_pixel_builder.state.wavelength_interval.wavelength_full_range = wavelength_range
wavelength_and_pixel_builder.state.wavelength_interval.selected_ranges = [wavelength_range]
wavelength_and_pixel_builder.state.wavelength_interval.wavelength_step = 2.0
wavelength_and_pixel_builder.set_wavelength_step_type(RangeStepType.LIN)
wavelength_and_pixel = wavelength_and_pixel_builder.build()
# Adjustment
adjustment_builder = get_adjustment_builder(self.data_state)
adjustment_builder.set_normalize_to_monitor(normalize_to_monitor)
adjustment_builder.set_calculate_transmission(calculate_transmission_obj)
adjustment_builder.set_wavelength_and_pixel_adjustment(wavelength_and_pixel)
self.adjustment_state = adjustment_builder.build()
# SANSStateConvertToQ
if self.convert_to_q_state is None:
convert_to_q_builder = get_convert_to_q_builder(self.data_state)
convert_to_q_builder.set_reduction_dimensionality(ReductionDimensionality.ONE_DIM)
convert_to_q_builder.set_use_gravity(False)
convert_to_q_builder.set_radius_cutoff(0.002)
convert_to_q_builder.set_wavelength_cutoff(12.)
convert_to_q_builder.set_q_min(0.1)
convert_to_q_builder.set_q_max(0.8)
convert_to_q_builder.set_q_1d_rebin_string("0.1,0.01,0.8")
convert_to_q_builder.set_use_q_resolution(False)
self.convert_to_q_state = convert_to_q_builder.build()
# Set the sub states on the SANSState
state_builder = get_all_states_builder(self.data_state)
state_builder.set_data(self.data_state)
state_builder.set_move(self.move_state)
state_builder.set_reduction(self.reduction_state)
state_builder.set_slice(self.slice_state)
state_builder.set_mask(self.mask_state)
state_builder.set_wavelength(self.wavelength_state)
state_builder.set_save(self.save_state)
state_builder.set_scale(self.scale_state)
state_builder.set_adjustment(self.adjustment_state)
state_builder.set_convert_to_q(self.convert_to_q_state)
state_builder.state.instrument_info = self.inst_info_state
return state_builder.build()
def test_that_reduction_state_can_be_built(self):
# Arrange
facility = SANSFacility.ISIS
file_information = SANSFileInformationMock(
instrument=SANSInstrument.LOQ, run_number=74044)
data_builder = get_data_builder(facility, file_information)
data_builder.set_sample_scatter("LOQ74044")
data_info = data_builder.build()
# Act
state_transmission = get_calculate_transmission(data_info.instrument)
state_transmission.prompt_peak_correction_min = 12.0
state_transmission.prompt_peak_correction_max = 17.0
state_transmission.incident_monitor = 1
state_transmission.default_incident_monitor = 2
state_transmission.transmission_monitor = 3
state_transmission.default_transmission_monitor = 4
state_transmission.transmission_radius_on_detector = 1.
state_transmission.transmission_roi_files = ["sdfs", "sddfsdf"]
state_transmission.transmission_mask_files = ["sdfs", "bbbbbb"]
state_transmission.rebin_type = RebinType.REBIN
state_transmission.wavelength_low = [1.5]
state_transmission.wavelength_high = [2.7]
state_transmission.wavelength_step = 0.5
state_transmission.wavelength_step_type = RangeStepType.LIN
state_transmission.use_full_wavelength_range = True
state_transmission.wavelength_full_range_low = 12.
state_transmission.wavelength_full_range_high = 24.
state_transmission.background_TOF_general_start = 1.4
state_transmission.background_TOF_general_stop = 34.4
state_transmission.background_TOF_monitor_start = {"1": 123, "2": 123}
state_transmission.background_TOF_monitor_stop = {"1": 234, "2": 2323}
state_transmission.background_TOF_roi_start = 1.4
state_transmission.background_TOF_roi_stop = 34.4
state_transmission.set_sample_fit_type(FitType.LINEAR)
state_transmission.set_sample_polynomial_order(0)
state_transmission.set_sample_wavelength_low(10.0)
state_transmission.set_sample_wavelength_high(20.0)
state_transmission.set_can_fit_type(FitType.POLYNOMIAL)
state_transmission.set_can_polynomial_order(3)
state_transmission.set_can_wavelength_low(10.0)
state_transmission.set_can_wavelength_high(20.0)
# Assert
self.assertEqual(state_transmission.prompt_peak_correction_min, 12.0)
self.assertEqual(state_transmission.prompt_peak_correction_max, 17.0)
self.assertEqual(state_transmission.incident_monitor, 1)
self.assertEqual(state_transmission.default_incident_monitor, 2)
self.assertEqual(state_transmission.transmission_monitor, 3)
self.assertEqual(state_transmission.default_transmission_monitor, 4)
self.assertEqual(state_transmission.transmission_radius_on_detector,
1.)
self.assertEqual(state_transmission.transmission_roi_files,
["sdfs", "sddfsdf"])
self.assertEqual(state_transmission.transmission_mask_files,
["sdfs", "bbbbbb"])
self.assertEqual(state_transmission.rebin_type, RebinType.REBIN)
self.assertEqual(state_transmission.wavelength_low, [1.5])
self.assertEqual(state_transmission.wavelength_high, [2.7])
self.assertEqual(state_transmission.wavelength_step, 0.5)
self.assertEqual(state_transmission.wavelength_step_type,
RangeStepType.LIN)
self.assertEqual(state_transmission.use_full_wavelength_range, True)
self.assertEqual(state_transmission.wavelength_full_range_low, 12.)
self.assertEqual(state_transmission.wavelength_full_range_high, 24.)
self.assertEqual(state_transmission.background_TOF_general_start, 1.4)
self.assertEqual(state_transmission.background_TOF_general_stop, 34.4)
self.assertEqual(
len(
set(state_transmission.background_TOF_monitor_start.items())
& set({
"1": 123,
"2": 123
}.items())), 2)
self.assertEqual(
len(
set(state_transmission.background_TOF_monitor_stop.items())
& set({
"1": 234,
"2": 2323
}.items())), 2)
self.assertEqual(state_transmission.background_TOF_roi_start, 1.4)
self.assertEqual(state_transmission.background_TOF_roi_stop, 34.4)
self.assertEqual(
state_transmission.fit[DataType.SAMPLE.value].fit_type,
FitType.LINEAR)
self.assertEqual(
state_transmission.fit[DataType.SAMPLE.value].polynomial_order, 0)
self.assertEqual(
state_transmission.fit[DataType.SAMPLE.value].wavelength_low, 10.)
self.assertEqual(
state_transmission.fit[DataType.SAMPLE.value].wavelength_high, 20.)
self.assertEqual(state_transmission.fit[DataType.CAN.value].fit_type,
FitType.POLYNOMIAL)
self.assertEqual(
state_transmission.fit[DataType.CAN.value].polynomial_order, 3)
self.assertEqual(
state_transmission.fit[DataType.CAN.value].wavelength_low, 10.)
self.assertEqual(
state_transmission.fit[DataType.CAN.value].wavelength_high, 20.)