def __prepareFolder(self):
logger.Logger().log("Preparing folder")
self.__workingFolder = "/tmp/biosaxsworkflows/" + datetime.datetime.now(
).strftime('%Y-%m-%d_%H-%M-%S')
try:
# Creating working folder
self.__workingFolder = self.createFolder(self.__workingFolder)
# Creating input folder
self.__inputFolder = self.createFolder(self.__workingFolder +
"/input")
# Creating output folder
self.__outputFolder = self.createFolder(self.__workingFolder +
"/output")
# Downloading subtractions
for filePath in self.getDataset().getSubtractionFilePathList():
fileName = ntpath.basename(filePath)
dest = self.createFolder(self.__inputFolder +
"/substraction") + "/" + fileName
self.ispyb.getFile(filePath, dest)
self.getDataset().setSubtractedfilePath(filePath, dest)
for filePath in self.getDataset().getPDBfilePathList():
fileName = ntpath.basename(filePath)
dest = self.createFolder(self.__inputFolder +
"/pdb") + "/" + fileName
self.ispyb.getFile(filePath, dest)
self.getDataset().setPDBfilePath(filePath, dest)
except ValueError:
raise SaxsFlowException('My exception occurred, value:',
ValueError.value)
def updateResults(self):
logger.Logger().log("updateResult: Method not implemented")
return
def run(self):
logger.Logger().log("run : Method not implemented")
return
def postProcessing(self):
logger.Logger().log("postProcessing: Method not implemented")
return
def preProcessing(self):
logger.Logger().log("preProcessing")
return