from schema import Schema, ClassProperty
import os
import csv
schema = Schema("http://sulab.org/")
schema.add_to_context("schema", "http://schema.org")
schema.add_to_context("bioschemas", "http://bioschemas.org")
schema.add_to_context("owl", "http://www.w3.org/2002/07/owl")
schema.add_to_context("rdf", "http://www.w3.org/1999/02/22-rdf-syntax-ns")
schema.add_to_context("rdfs", "http://www.w3.org/2000/01/rdf-schema")
schema.add_to_context("outbreak", "http://outbreak.info/")
schema.add_to_context("prs", "https://prsinfo.clinicaltrials.gov/ProtocolRecordSchema.xsd")
class_dir = "yaml/classes"
class_files = [os.path.join(os.getcwd(), "yaml/classes", f)
for f in os.listdir(class_dir) if os.path.isfile(os.path.join(class_dir, f))]
for class_file in class_files:
with open(class_file, "r") as fin:
csv_reader = csv.reader(fin)
cols = []
class_props = []
for row in csv_reader:
if len(cols) == 0:
cols = row
else:
class_prop = ClassProperty()
class_prop.id = "outbreak:" + row[cols.index("Property")]
class_prop.comment = row[cols.index("Description")]
