def test_print_oneline(self):
# Issue #135
document_loader, avsc_names, schema_metadata, metaschema_loader = load_schema(
get_data(u"tests/test_schema/CommonWorkflowLanguage.yml"))
src = "test15.cwl"
with self.assertRaises(ValidationException):
try:
load_and_validate(
document_loader, avsc_names,
six.text_type(get_data("tests/test_schema/" + src)), True)
except ValidationException as e:
msgs = to_one_line_messages(str(e)).splitlines()
self.assertEqual(len(msgs), 2)
m = re.match(r'^(.+:\d+:\d+:)(.+)$', msgs[0])
self.assertTrue(msgs[0].endswith(
src +
":11:7: invalid field `invalid_field`, expected one of: 'loadContents', 'position', 'prefix', 'separate', 'itemSeparator', 'valueFrom', 'shellQuote'"
))
self.assertTrue(msgs[1].endswith(
src +
":12:7: invalid field `another_invalid_field`, expected one of: 'loadContents', 'position', 'prefix', 'separate', 'itemSeparator', 'valueFrom', 'shellQuote'"
))
print("\n", e)
raise
def test_print_oneline_for_errors_in_the_same_line(self):
# Issue #136
document_loader, avsc_names, schema_metadata, metaschema_loader = load_schema(
get_data(u"tests/test_schema/CommonWorkflowLanguage.yml"))
src = "test17.cwl"
with self.assertRaises(ValidationException):
try:
load_and_validate(
document_loader, avsc_names,
six.text_type(get_data("tests/test_schema/" + src)), True)
except ValidationException as e:
msgs = to_one_line_messages(str(e)).splitlines()
self.assertEqual(len(msgs), 3)
self.assertTrue(msgs[0].endswith(
src + ":9:1: the `outputs` field is not valid because"))
self.assertTrue(
msgs[1].endswith(src +
":13:5: missing required field `id`"))
self.assertTrue(msgs[2].endswith(
src +
":13:5: invalid field `aa`, expected one of: 'label', 'secondaryFiles', 'format', 'streamable', 'doc', 'id', 'outputBinding', 'type'"
))
print("\n", e)
raise
def test_print_oneline_for_invalid_yaml(self):
# Issue #137
document_loader, avsc_names, schema_metadata, metaschema_loader = load_schema(
get_data(u"tests/test_schema/CommonWorkflowLanguage.yml"))
src = "test16.cwl"
with self.assertRaises(RuntimeError):
try:
load_and_validate(
document_loader, avsc_names,
six.text_type(get_data("tests/test_schema/" + src)), True)
except RuntimeError as e:
msg = reformat_yaml_exception_message(
strip_dup_lineno(six.text_type(e)))
msg = to_one_line_messages(msg)
self.assertTrue(
msg.endswith(src + ":10:1: could not find expected \':\'"))
print("\n", e)
raise
def test_print_oneline_for_errors_in_resolve_ref(self):
# Issue #141
document_loader, avsc_names, schema_metadata, metaschema_loader = load_schema(
get_data(u"tests/test_schema/CommonWorkflowLanguage.yml"))
src = "test18.cwl"
fullpath = normpath(get_data("tests/test_schema/" + src))
with self.assertRaises(ValidationException):
try:
load_and_validate(document_loader, avsc_names,
six.text_type(fullpath), True)
except ValidationException as e:
msgs = to_one_line_messages(
str(strip_dup_lineno(six.text_type(e)))).splitlines()
# convert Windows path to Posix path
if '\\' in fullpath:
fullpath = '/' + fullpath.lower().replace('\\', '/')
self.assertEqual(len(msgs), 1)
print("\n", e)
assert msgs[0].endswith(
src + ':13:5: Field `type` references unknown identifier '
'`Filea`, tried file://%s#Filea' % (fullpath))
raise
def test_print_oneline_for_errors_in_resolve_ref():
# Issue #141
document_loader, avsc_names, schema_metadata, metaschema_loader = load_schema(
get_data(u"tests/test_schema/CommonWorkflowLanguage.yml"))
src = "test18.cwl"
fullpath = normpath(get_data("tests/test_schema/" + src))
with pytest.raises(ValidationException):
try:
load_and_validate(document_loader, avsc_names,
six.text_type(fullpath), True)
except ValidationException as e:
msgs = to_one_line_messages(str(strip_dup_lineno(
six.text_type(e)))).splitlines()
# convert Windows path to Posix path
if "\\" in fullpath:
fullpath = "/" + fullpath.lower().replace("\\", "/")
assert len(msgs) == 2
print("\n", e)
assert msgs[0].endswith(src + ":9:1: checking field `outputs`")
assert msgs[1].endswith(
src + ":14:5: Field `type` references unknown identifier "
"`Filea`, tried file://%s#Filea" % (fullpath))
raise
