import logging
import os
import numpy as np
from scilpy.image.operations import (get_array_ops, get_operations_doc)
from scilpy.io.utils import (add_overwrite_arg,
add_verbose_arg,
assert_outputs_exist,
load_matrix_in_any_format,
save_matrix_in_any_format)
from scilpy.utils.util import is_float
OPERATIONS = get_array_ops()
ADDED_DOC = get_operations_doc(OPERATIONS).replace('images', 'matrices')
ADDED_DOC = ADDED_DOC.replace('image', 'matrix')
ADDED_DOC = ADDED_DOC.replace('IMG', 'MAT')
__doc__ += ADDED_DOC
def _build_arg_parser():
p = argparse.ArgumentParser(
formatter_class=argparse.RawTextHelpFormatter,
description=__doc__)
p.add_argument('operation',
choices=OPERATIONS.keys(),
help='The type of operation to be performed on the '
'matrices.')
p.add_argument('inputs', nargs='+',
import argparse
import logging
import os
from dipy.io.utils import is_header_compatible
import nibabel as nib
import numpy as np
from scilpy.image.operations import (get_image_ops, get_operations_doc)
from scilpy.io.utils import (add_overwrite_arg, add_verbose_arg,
assert_outputs_exist)
from scilpy.utils.util import is_float
OPERATIONS = get_image_ops()
__doc__ += get_operations_doc(OPERATIONS)
def _build_arg_parser():
p = argparse.ArgumentParser(formatter_class=argparse.RawTextHelpFormatter,
description=__doc__)
p.add_argument('operation',
choices=OPERATIONS.keys(),
help='The type of operation to be performed on the '
'images.')
p.add_argument('in_images',
nargs='+',
help='The list of image files or parameters.')
p.add_argument('out_image', help='Output image path.')
add_verbose_arg,
assert_outputs_exist)
from scilpy.utils.util import is_float
OPERATIONS = get_image_ops()
DESCRIPTION = """
Performs an operation on a list of images. The supported operations are
listed below.
Some operations such as multiplication or addition accept float value as
parameters instead of images.
> scil_image_math.py multiplication img.nii.gz 10 mult_10.nii.gz
"""
DESCRIPTION += get_operations_doc(OPERATIONS)
def _build_arg_parser():
p = argparse.ArgumentParser(
formatter_class=argparse.RawTextHelpFormatter,
description=DESCRIPTION)
p.add_argument('operation',
choices=OPERATIONS.keys(),
help='The type of operation to be performed on the '
'images.')
p.add_argument('inputs', nargs='+',
help='The list of image files or parameters.')