def test_circular(self):
w = [[1, 1, 1], [1, 1, 1], [1, 1, 1]]
c = [[[1, 1, 1], [1, 1, 1], [1, 1, 1]], [[1, 1, 1], [1, 1, 1], [1, 1, 1]], [[1, 1, 1], [1, 1, 1], [1, 1, 1]]]
sp.plot_circular(1, [1, 1, 1], topo=self.topo, topomaps=self.maps)
sp.plot_circular(w, [1, 1, 1], topo=self.topo, topomaps=self.maps)
sp.plot_circular(1, c, topo=self.topo, topomaps=self.maps)
sp.plot_circular(w, c, topo=self.topo, topomaps=self.maps)
sp.plot_circular(w, c, mask=False, topo=self.topo, topomaps=self.maps)
def test_circular(self):
w = [[1, 1, 1], [1, 1, 1], [1, 1, 1]]
c = [[[1, 1, 1], [1, 1, 1], [1, 1, 1]],
[[1, 1, 1], [1, 1, 1], [1, 1, 1]],
[[1, 1, 1], [1, 1, 1], [1, 1, 1]]]
sp.plot_circular(1, [1, 1, 1], topo=self.topo, topomaps=self.maps)
sp.plot_circular(w, [1, 1, 1], topo=self.topo, topomaps=self.maps)
sp.plot_circular(1, c, topo=self.topo, topomaps=self.maps)
sp.plot_circular(w, c, topo=self.topo, topomaps=self.maps)
sp.plot_circular(w, c, mask=False, topo=self.topo, topomaps=self.maps)
np.fill_diagonal(alpha['foot'], 0)
order = None
for cls in ['hand', 'foot']:
np.fill_diagonal(alpha[cls], 0)
w = alpha[cls]
m = alpha[cls] > 4
# use same ordering of components for each class
if not order:
order = cuthill_mckee(m)
# fixed color, but alpha varies with connectivity strength
r = np.ones(w.shape)
g = np.zeros(w.shape)
b = np.zeros(w.shape)
a = (alpha[cls] - 4) / max(np.max(alpha['hand'] - 4),
np.max(alpha['foot'] - 4))
c = np.dstack([r, g, b, a])
plotting.plot_circular(colors=c,
widths=w,
mask=m,
topo=topo,
topomaps=mixmaps,
order=order)
plt.title(cls)
plotting.show_plots()
topo.set_locations(locs)
mixmaps = plotting.prepare_topoplots(topo, ws.mixing_)
# Force diagonal (self-connectivity) to 0
np.fill_diagonal(alpha['hand'], 0)
np.fill_diagonal(alpha['foot'], 0)
order = None
for cls in ['hand', 'foot']:
np.fill_diagonal(alpha[cls], 0)
w = alpha[cls]
m = alpha[cls] > 4
# use same ordering of components for each class
if not order:
order = cuthill_mckee(m)
# fixed color, but alpha varies with connectivity strength
r = np.ones(w.shape)
g = np.zeros(w.shape)
b = np.zeros(w.shape)
a = (alpha[cls]-4) / max(np.max(alpha['hand']-4), np.max(alpha['foot']-4))
c = np.dstack([r, g, b, a])
plotting.plot_circular(colors=c, widths=w, mask=m, topo=topo,
topomaps=mixmaps, order=order)
plt.title(cls)
plotting.show_plots()
