def test_set_coordinates_no_variant_type():
"""Test update coordinates when nothing to update"""
# GIVEN a variant with some coordinates
pos = 10
end = 10
length = 1
var = {
"_id": "1_10_A_C",
"pos": pos,
"end": end,
"length": length,
}
# WHEN setting the coordinates
LoqusDB.set_coordinates(var)
# THEN assert that nothing changed
assert var["pos"] == pos
assert var["end"] == end
assert var["length"] == length
def test_set_coordinates_unknown_ins():
"""Test update coordinates when insertion length is unknown"""
# GIVEN a variant with some coordinates
pos = 10
end = 10
length = -1
var_type = "INS"
var = {
"_id": "1_10_INS",
"pos": pos,
"end": end,
"length": length,
"variant_type": var_type,
}
# WHEN setting the coordinates
LoqusDB.set_coordinates(var)
# THEN assert that end coordinate is updated
assert var["pos"] == pos
assert var["end"] == end
assert var["length"] == length
