def addReactionRulesBlock(self,
rrBlock,
dimerGenBlock,
omniGenBlock,
uniMolGenBlock,
overwrite=False):
if self.reactionRulesBlock and not overwrite:
raise MzrExceptions.MoleculizerException(
"Error: Cannot add a reaction rules block twice.")
if not self.BlockPassesSanityCheck(rrBlock):
raise InsaneBlockOnTheLooseException(rrBlock, "reaction rules")
if not self.BlockPassesSanityCheck(dimerGenBlock):
raise InsaneBlockOnTheLooseException(dimerGenBlock,
"dimerization gen block")
if not self.BlockPassesSanityCheck(omniGenBlock):
raise InsaneBlockOnTheLooseException(omniGenBlock,
"omni-gen block")
if not self.BlockPassesSanityCheck(uniMolGenBlock):
raise InsaneBlockOnTheLooseException(uniMolGenBlock,
"uni-mol-gen block")
self.reactionRulesBlock.extend(rrBlock)
self.dimerizationGenBlock.extend(dimerGenBlock)
self.omniGenBlock.extend(omniGenBlock)
self.uniMolGenBlock.extend(uniMolGenBlock)
self.reactionGensSection = ReactionRulesSection(
self.reactionRulesBlock, self.dimerizationGenBlock,
self.omniGenBlock, self.uniMolGenBlock)
def addUniMolGenStatement(self, uniMolGenLine):
uniMolGenLine = self.PreProcessStatement(uniMolGenLine)
self.uniMolGenBlock.append(uniMolGenLine)
self.reactionGensSection = ReactionRulesSection(
self.reactionRulesBlock, self.dimerizationGenBlock,
self.omniGenBlock, self.uniMolGenBlock)
return
