def test_squeeze_none(self):
"""
Threshold of 0.001 - nothing should be squeezed.
"""
result = list(transform.squeeze(self.sequences, 1.01))
self.assertEqual([str(i.seq) for i in self.sequences],
[str(i.seq) for i in result])
def test_squeeze_none(self):
"""
Threshold of 0.001 - nothing should be squeezed.
"""
result = list(transform.squeeze(self.sequences, 1.01))
self.assertEqual([str(i.seq) for i in self.sequences],
[str(i.seq) for i in result])
def test_basic_squeeze(self):
result = list(transform.squeeze(self.sequences, 1.0))
self.assertEqual([4, 4, 4], [len(i) for i in result])
self.assertEqual([i.id for i in self.sequences], [i.id for i in result])
expected = [
seqrecord('sequence_1', 'ACG-'),
seqrecord('sequence_2', '-CGT'),
seqrecord('sequence_3', '-TAG'),
]
self.assertEqual([str(i.seq) for i in expected],
[str(i.seq) for i in result])
def test_basic_squeeze(self):
result = list(transform.squeeze(self.sequences, 1.0))
self.assertEqual([4, 4, 4], [len(i) for i in result])
self.assertEqual([i.id for i in self.sequences], [i.id for i in result])
expected = [
seqrecord('sequence_1', 'ACG-'),
seqrecord('sequence_2', '-CGT'),
seqrecord('sequence_3', '-TAG'),
]
self.assertEqual([str(i.seq) for i in expected],
[str(i.seq) for i in result])