def test_degen_sz(self):
seq_record = SeqRecordExpanded(self.seq, reading_frame=1)
expected = 'NNNGARTGGAARACNAARMGNCCN'
self.assertEqual(expected, seq_record.degenerate(method='SZ'), 'Using reading_frame=1')
seq_record = SeqRecordExpanded(self.seq, reading_frame=3)
expected = 'TGAATGGARGAYAARGCNNNNA'
self.assertEqual(expected, seq_record.degenerate(method='SZ'), 'Using reading_frame=3')
def test_degen_standard(self):
seq_record = SeqRecordExpanded(self.seq, reading_frame=1, table=1)
expected = 'TCNGARTGGAARACNAARMGNCCN'
self.assertEqual(expected, seq_record.degenerate(), 'Using reading_frame=1')
seq_record = SeqRecordExpanded(self.seq, reading_frame=2, table=1)
expected = 'YTNAAYGGNMGNCARAGYGTNCA'
self.assertEqual(expected, seq_record.degenerate(), 'Using reading_frame=2')
def test_degen_z(self):
seq_record = SeqRecordExpanded(self.seq, reading_frame=1)
expected = 'TCNGARTGGAARACNAARMGNCCN'
self.assertEqual(expected, seq_record.degenerate(method='Z'))