def write_svg(filename, output):
with debug.report_exceptions():
open(output, 'w').write(AbiFormat(filename).svg())
def get_pbas(self):
return ''.join(p.decode('utf-8') for p in self.get('PBAS').entries)
def get_ploc(self):
return self.get('PLOC').entries
def get_peaks(self, i):
return self.get('DATA', 9 + i).entries
def get_raw_peaks(self, i):
return self.get('DATA', 1 + i).entries
def svg(self):
t = svg.SvgItemsVStack()
t.add(svg.SvgText(self.get_name()))
t.add(svg.SvgText('Original Sequencing Result:'))
t.add(self.view.get_svg_base_peaks(200))
t.add(svg.SvgText('Reversed-Complemental Result:'))
t.add(self.rc_view.get_svg_base_peaks(200))
t.add(svg.SvgItemsFixedHeight(8))
t.add(svg.SvgText('Raw Data:'))
t.add(self.view.get_svg_raw_peaks(500))
return svg.SvgPadding(20, 20, t).svg()
def write_svg(filename, output):
with debug.report_exceptions():
open(output, 'w').write(AbiFormat(filename).svg())
if __name__ == '__main__':
with debug.report_exceptions():
a = AbiFormat('files/test.ab1')
open('test.svg', 'w').write(a.svg())