def index(self, search=None):
template = env.get_template('index.html')
if cherrypy.request.method == 'POST':
stocks = self.get_filter_result(search)
else:
stocks = self.get_stocks()
return template.render(stocks=stocks)
def render_template(self):
try:
template = env.get_template(self.template_name)
except:
raise NoSuchTemplate("Cannot find template '{0} in templates directory".format(self.template_name))
output = template.render(self.get_context_data())
return output
def index(self):
tmpl = env.get_template('index.html')
return tmpl.render( hostaddress=hostaddress,
admin_email=admin_email,
reference=reference,
servername=servername,
hostparent=hostparent,
exampleid=exampleid,
last_updated_time=last_updated_time )
def __call__( self, jobid ) : info = read_user_info( jobid ) try : if self.is_completed(jobid ) : tmpl = env.get_template( 'view.html' ) motifids = range( 1, max_motif_id+1 ) selection = self.select_tomtom_matches( jobid ) motifscore = MotifScore( jobid ) passed_motifids = motifscore.get_passed_motifids() return tmpl.render( servername=servername, hostaddress=hostaddress, hostparent=hostparent, jobid=jobid, userInfo=info, motifids=motifids, passed_motifids= passed_motifids, selection=selection, reference=reference, admin_email=admin_email ) else : tmpl = env.get_template( 'view_check.html' ) check_result = '<b>Your job has not been finished yet. Check few minutes later.</b>' return tmpl.render( servername=servername, check_result= check_result, hostparent=hostparent, jobid=jobid, userInfo=info, reference=reference, admin_email=admin_email ) except JobFailureError : tmpl = env.get_template( 'view_check.html' ) check_result = '<strong>A problem occurred while processing your job. We are working on it and we will get back to you shortly.</strong>' return tmpl.render( servername=servername, check_result= check_result, hostparent=hostparent, jobid=jobid, userInfo=info, reference=reference, admin_email=admin_email )
def get_picture_html(records, columns=5, output_html=None):
template = env.get_template('drug_picture.html')
object_lists = []
for i in range(0, len(records), columns):
object_lists.append(records[i:i + columns])
html = template.render(object_lists=object_lists)
if output_html:
with open(output_html, 'wt', encoding='utf-8') as fp:
fp.write(html)
else:
return html
def render_element(self) -> str:
super().render_element()
template = env.get_template(f'{type(self).__name__}.j2')
render_data: str = template.render(element=self)
return render_data
def error_page(rq, rs, exc):
logging.exception(exc)
rs.write(env.get_template("error.html").render())
rs.headers['Content-Type'] = "text/html"
rs.set_status(500)
def __call__( self, myFile, email, db, fileformat, normtype, jobname, cell, treatment, lab, summitcol='' ) :
# dealing uploaded file.
# myFile contains file handle for the uploaded peak file
# email should be given all the time!
# fileformat value can be either 'narrowpeak' or 'bed'
# db can be 'hg19' or 'mm9' depending on which genome the experiment were performed.
# normtype can be 'summit' or 'center'
# summitcol should be either None or 'col<column number>' where the column number should be
# in 1 based ordering
# jobname can be either None or name of the job or TF depending on the user input.
## This is very useful trick to check the internal structure of submitted and parsed values.
#def __call__( self, **kwargs ) :
#print kwargs
#return
tmpl = env.get_template( 'uploaded.html' )
#1. make the save_dir
save_dir = mkdtemp( dir=user_dir, prefix='fmp' )
jobid = basename( save_dir )
#2. save uploaded file into the save_dir
save_fn = join( save_dir, jobid )
save_fp = open( save_fn, 'w' )
#old read line to use all lines
#size = 0
#while True:
# data = myFile.file.read(8192)
# if not data:
# break
# size += len(data)
# save_fp.write( data )
#save_fp.close()
#new read line to use top N lines
for i, l in enumerate(myFile.file) :
if use_top_lines and i >= use_top_lines :
break
save_fp.write(l)
save_fp.close()
#read the end of the uploaded file and tell the size
myFile.file.seek(0,2)
size = myFile.file.tell()
#3. save user information
data_fp = open( join( save_dir, user_data_fn ), "w" )
print >>data_fp, "jobname:", jobname
print >>data_fp, "cell:", cell
print >>data_fp, "treatment:", treatment
print >>data_fp, "lab:", lab
print >>data_fp, "email:", email
print >>data_fp, "filename:", myFile.filename
print >>data_fp, "mime-type:", myFile.content_type
print >>data_fp, 'db:', db
print >>data_fp, 'normtype:', normtype
print >>data_fp, 'fileformat:', fileformat
print >>data_fp, 'summitcol:', summitcol
data_fp.close()
#4. submit the jobscript
self.submit(jobid)
return tmpl.render( filename=myFile.filename, jobname=jobname, email=email, jobid=jobid, size=size, mimetype=myFile.content_type )
def render_to_string(filename, context={}):
template = env.get_template(filename)
rendered = template.render(**context)
return rendered
def render(tpl, context):
#print(env.loader.list_templates())
t = env.get_template(tpl)
return t.render(context)
def render(template, data=None, *args, **kw):
content = env.get_template(template).render(**(data or {}))
return webapp2.Response(content, *args, **kw)
