Esempio n. 1
0
def mesh():
    if len(sys.argv) == 3:
        geom_filename = sys.argv[1]
        vtk_filename = sys.argv[2]
    else:
        print "Usage: %s <gmsh_filename> <mesh_filename>" % sys.argv[0]
        return

    os.system("gmsh -0 %s -o tmp/x.geo" % geom_filename)
    g = geom.read_gmsh("tmp/x.geo")
    g.printinfo()
    geom.write_tetgen(g, "tmp/t.poly")
    geom.runtetgen("tmp/t.poly", a=0.03, Q=1.0, quadratic=False, tetgenpath=tetgen_path)

    m = Mesh.from_file("tmp/t.1.node")
    m.write(vtk_filename, io="auto")
Esempio n. 2
0
def main():
    parser = OptionParser(usage=usage, version='%prog ' + sfepy.__version__)
    parser.add_option('-c', '--conf', metavar='"key : value, ..."',
                      action='store', dest='conf', type='string',
                      default=None, help= help['conf'])
    parser.add_option('-O', '--options', metavar='"key : value, ..."',
                      action='store', dest='app_options', type='string',
                      default=None, help=help['options'])
    parser.add_option('-o', '', metavar='filename',
                      action='store', dest='output_filename_trunk',
                      default=None, help=help['filename'])
    parser.add_option('--create-mesh',
                      action='store_true', dest='create_mesh',
                      default=False, help=help['create_mesh'])
    parser.add_option('--2d',
                      action='store_true', dest='dim2',
                      default=False, help=help['dim'])
    parser.add_option('-m', '--mesh', metavar='filename',
                      action='store', dest='mesh',
                      default=None, help=help['mesh'])
    parser.add_option('--mesh-dir', metavar='dirname',
                      action='store', dest='mesh_dir',
                      default='tmp', help=help['mesh_dir'])
    parser.add_option('--oscillator',
                      action='store_true', dest='oscillator',
                      default=False, help=help['oscillator'])
    parser.add_option('--well',
                      action='store_true', dest='well',
                      default=False, help=help['well'])
    parser.add_option('--hydrogen',
                      action='store_true', dest='hydrogen',
                      default=False, help=help['hydrogen'])
    parser.add_option('--boron',
                      action='store_true', dest='boron',
                      default=False, help=help['boron'])

    options, args = parser.parse_args()

    if options.create_mesh and options.mesh:
        output('--create-mesh and --mesh options are mutually exclusive!')
        return

    if len(args) == 1:
        filename_in = args[0];
        auto_mesh_name = False

    elif len(args) == 0:
        auto_mesh_name = True

        mesh_filename = os.path.join(options.mesh_dir, 'mesh.vtk')
        ensure_path(mesh_filename)

        if options.oscillator:
            filename_in = fix_path("examples/quantum/oscillator.py")

        elif options.well:
            filename_in = fix_path("examples/quantum/well.py")

        elif options.hydrogen:
            filename_in = fix_path("examples/quantum/hydrogen.py")

        elif options.boron:
            filename_in = fix_path("examples/quantum/boron.py")

        elif options.create_mesh:
            output('generating mesh...')
            try:
                os.makedirs("tmp")
            except OSError, e:
                if e.errno != 17: # [Errno 17] File exists
                    raise
            if options.dim2:
                output("dimension: 2")
                gp = fix_path('meshes/quantum/square.geo')
                os.system("cp %s tmp/mesh.geo" % gp)
                os.system("gmsh -2 tmp/mesh.geo -format mesh")
                mtv = fix_path('script/mesh_to_vtk.py')
                os.system("%s tmp/mesh.mesh %s" % (mtv, mesh_filename))
            else:
                output("dimension: 3")
                import sfepy.geom as geom
                from sfepy.fem.mesh import Mesh
                try:
                    from site_cfg import tetgen_path
                except ImportError:
                    tetgen_path = '/usr/bin/tetgen'
                gp = fix_path('meshes/quantum/box.geo')
                os.system("gmsh -0 %s -o tmp/x.geo" % gp)
                g = geom.read_gmsh("tmp/x.geo")
                g.printinfo()
                geom.write_tetgen(g, "tmp/t.poly")
                geom.runtetgen("tmp/t.poly", a=0.03, Q=1.0,
                               quadratic=False, tetgenpath=tetgen_path)
                m = Mesh.from_file("tmp/t.1.node")
                m.write(mesh_filename, io="auto")
            output("...mesh written to %s" % mesh_filename)
            return

        else:
            parser.print_help()
            return
Esempio n. 3
0
def main():
    parser = OptionParser(usage = usage, version = "%prog " + sfepy.__version__)
    parser.add_option( "--mesh",
                       action = "store_true", dest = "mesh",
                       default = False, help = help['mesh'] )
    parser.add_option( "--2d",
                       action = "store_true", dest = "dim2",
                       default = False, help = help['dim'] )
    parser.add_option( "-o", "", metavar = 'filename',
                       action = "store", dest = "output_filename_trunk",
                       default = "mesh", help = help['filename'] )
    parser.add_option( "--oscillator",
                       action = "store_true", dest = "oscillator",
                       default = False, help = help['oscillator'] )
    parser.add_option( "--well",
                       action = "store_true", dest = "well",
                       default = False, help = help['well'] )
    parser.add_option( "--hydrogen",
                       action = "store_true", dest = "hydrogen",
                       default = False, help = help['hydrogen'] )
    parser.add_option( "--boron",
                       action = "store_true", dest = "boron",
                       default = False, help = help['boron'] )
    parser.add_option( "--dft",
                       action = "store_true", dest = "dft",
                       default = False, help = help['dft'] )
    parser.add_option( "-p", "--plot",
                       action = "store_true", dest = "plot",
                       default = False, help = help['plot'] )

    options, args = parser.parse_args()

    if len( args ) == 1:
        filename_in = args[0];
        auto_mesh_name = False
        
    elif len( args ) == 0:
        auto_mesh_name = True

        if options.oscillator:
            filename_in = fix_path("examples/quantum/oscillator.py")

        elif options.well:
            filename_in = fix_path("examples/quantum/well.py")

        elif options.hydrogen:
            filename_in = fix_path("examples/quantum/hydrogen.py")

        elif options.boron:
            filename_in = fix_path("examples/quantum/boron.py")

        elif options.mesh:
            output('generating mesh...')
            try:
                os.makedirs("tmp")
            except OSError, e:
                if e.errno != 17: # [Errno 17] File exists
                    raise
            if options.dim2:
                output("dimension: 2")
                gp = fix_path('meshes/quantum/square.geo')
                os.system("cp %s tmp/mesh.geo" % gp)
                os.system("gmsh -2 tmp/mesh.geo -format mesh")
                mtv = fix_path('script/mesh_to_vtk.py')
                os.system("%s tmp/mesh.mesh tmp/mesh.vtk" % mtv)
            else:
                output("dimension: 3")
                import sfepy.geom as geom
                from sfepy.fem.mesh import Mesh
                try:
                    from site_cfg import tetgen_path
                except ImportError:
                    tetgen_path = '/usr/bin/tetgen'
                gp = fix_path('meshes/quantum/box.geo')
                os.system("gmsh -0 %s -o tmp/x.geo" % gp)
                g = geom.read_gmsh("tmp/x.geo")
                g.printinfo()
                geom.write_tetgen(g, "tmp/t.poly")
                geom.runtetgen("tmp/t.poly", a=0.03, Q=1.0,
                               quadratic=False, tetgenpath=tetgen_path)
                m = Mesh.from_file("tmp/t.1.node")
                m.write("tmp/mesh.vtk", io="auto")
            output("...mesh written to tmp/mesh.vtk")
            return

        elif options.dft:
            output('the --dft option requires input file') 
            return

        else:
            parser.print_help()
            return