def get_context():
float, complex, mpitype = datatypes(params.precision)
collapse_fourier = False if params.dealias == '3/2-rule' else True
dim = len(params.N)
dtype = lambda d: float if d == dim - 1 else complex
V = [
Basis(params.N[i], 'F', domain=(0, params.L[i]), dtype=dtype(i))
for i in range(dim)
]
kw0 = {
'threads': params.threads,
'planner_effort': params.planner_effort['fft']
}
T = TensorProductSpace(comm,
V,
dtype=float,
slab=(params.decomposition == 'slab'),
collapse_fourier=collapse_fourier,
**kw0)
VT = VectorTensorProductSpace(T)
VM = MixedTensorProductSpace([T] * 2 * dim)
mask = T.mask_nyquist() if params.mask_nyquist else None
kw = {
'padding_factor': 1.5 if params.dealias == '3/2-rule' else 1,
'dealias_direct': params.dealias == '2/3-rule'
}
Vp = [
Basis(params.N[i], 'F', domain=(0, params.L[i]), dtype=dtype(i), **kw)
for i in range(dim)
]
Tp = TensorProductSpace(comm,
Vp,
dtype=float,
slab=(params.decomposition == 'slab'),
collapse_fourier=collapse_fourier,
**kw0)
VTp = VectorTensorProductSpace(Tp)
VMp = MixedTensorProductSpace([Tp] * 2 * dim)
# Mesh variables
X = T.local_mesh(True)
K = T.local_wavenumbers(scaled=True)
for i in range(dim):
X[i] = X[i].astype(float)
K[i] = K[i].astype(float)
K2 = np.zeros(T.shape(True), dtype=float)
for i in range(dim):
K2 += K[i] * K[i]
# Set Nyquist frequency to zero on K that is, from now on, used for odd derivatives
Kx = T.local_wavenumbers(scaled=True, eliminate_highest_freq=True)
for i in range(dim):
Kx[i] = Kx[i].astype(float)
K_over_K2 = np.zeros(VT.shape(True), dtype=float)
for i in range(dim):
K_over_K2[i] = K[i] / np.where(K2 == 0, 1, K2)
UB = Array(VM)
P = Array(T)
curl = Array(VT)
UB_hat = Function(VM)
P_hat = Function(T)
dU = Function(VM)
Source = Array(VM)
ub_dealias = Array(VMp)
ZZ_hat = np.zeros((3, 3) + Tp.shape(True), dtype=complex) # Work array
# Create views into large data structures
U = UB[:3]
U_hat = UB_hat[:3]
B = UB[3:]
B_hat = UB_hat[3:]
# Primary variable
u = UB_hat
hdf5file = MHDFile(config.params.solver,
checkpoint={
'space': VM,
'data': {
'0': {
'UB': [UB_hat]
}
}
},
results={
'space': VM,
'data': {
'UB': [UB]
}
})
return config.AttributeDict(locals())
def get_context():
"""Set up context for classical (NS) solver"""
float, complex, mpitype = datatypes(params.precision)
collapse_fourier = False if params.dealias == '3/2-rule' else True
dim = len(params.N)
dtype = lambda d: float if d == dim-1 else complex
V = [Basis(params.N[i], 'F', domain=(0, params.L[i]),
dtype=dtype(i)) for i in range(dim)]
kw0 = {'threads': params.threads,
'planner_effort': params.planner_effort['fft']}
T = TensorProductSpace(comm, V, dtype=float,
slab=(params.decomposition == 'slab'),
collapse_fourier=collapse_fourier, **kw0)
VT = VectorTensorProductSpace(T)
# Different bases for nonlinear term, either 2/3-rule or 3/2-rule
kw = {'padding_factor': 1.5 if params.dealias == '3/2-rule' else 1,
'dealias_direct': params.dealias == '2/3-rule'}
Vp = [Basis(params.N[i], 'F', domain=(0, params.L[i]),
dtype=dtype(i), **kw) for i in range(dim)]
Tp = TensorProductSpace(comm, Vp, dtype=float,
slab=(params.decomposition == 'slab'),
collapse_fourier=collapse_fourier, **kw0)
VTp = VectorTensorProductSpace(Tp)
# Mesh variables
X = T.local_mesh(True)
K = T.local_wavenumbers(scaled=True)
for i in range(dim):
X[i] = X[i].astype(float)
K[i] = K[i].astype(float)
K2 = np.zeros(T.shape(True), dtype=float)
for i in range(dim):
K2 += K[i]*K[i]
# Set Nyquist frequency to zero on K that is, from now on, used for odd derivatives
Kx = T.local_wavenumbers(scaled=True, eliminate_highest_freq=True)
for i in range(dim):
Kx[i] = Kx[i].astype(float)
K_over_K2 = np.zeros(VT.shape(True), dtype=float)
for i in range(dim):
K_over_K2[i] = K[i] / np.where(K2 == 0, 1, K2)
# Velocity and pressure. Use ndarray view for efficiency
U = Array(VT)
U_hat = Function(VT)
P = Array(T)
P_hat = Function(T)
u_dealias = Array(VTp)
# Primary variable
u = U_hat
# RHS array
dU = Function(VT)
curl = Array(VT)
Source = Function(VT) # Possible source term initialized to zero
work = work_arrays()
hdf5file = NSFile(config.params.solver,
checkpoint={'space': VT,
'data': {'0': {'U': [U_hat]}}},
results={'space': VT,
'data': {'U': [U], 'P': [P]}})
return config.AttributeDict(locals())
def get_context():
"""Set up context for classical (NS) solver"""
float, complex, mpitype = datatypes(params.precision)
collapse_fourier = False if params.dealias == '3/2-rule' else True
dim = len(params.N)
dtype = lambda d: float if d == dim - 1 else complex
V = [
Basis(params.N[i], 'F', domain=(0, params.L[i]), dtype=dtype(i))
for i in range(dim)
]
kw0 = {
'threads': params.threads,
'planner_effort': params.planner_effort['fft']
}
T = TensorProductSpace(comm,
V,
dtype=float,
slab=(params.decomposition == 'slab'),
collapse_fourier=collapse_fourier,
**kw0)
VT = VectorTensorProductSpace(T)
# Different bases for nonlinear term, either 2/3-rule or 3/2-rule
kw = {
'padding_factor': 1.5 if params.dealias == '3/2-rule' else 1,
'dealias_direct': params.dealias == '2/3-rule'
}
Vp = [
Basis(params.N[i], 'F', domain=(0, params.L[i]), dtype=dtype(i), **kw)
for i in range(dim)
]
Tp = TensorProductSpace(comm,
Vp,
dtype=float,
slab=(params.decomposition == 'slab'),
collapse_fourier=collapse_fourier,
**kw0)
VTp = VectorTensorProductSpace(Tp)
# Mesh variables
X = T.local_mesh(True)
K = T.local_wavenumbers(scaled=True)
for i in range(dim):
X[i] = X[i].astype(float)
K[i] = K[i].astype(float)
K2 = np.zeros(T.shape(True), dtype=float)
for i in range(dim):
K2 += K[i] * K[i]
# Set Nyquist frequency to zero on K that is, from now on, used for odd derivatives
Kx = T.local_wavenumbers(scaled=True, eliminate_highest_freq=True)
for i in range(dim):
Kx[i] = Kx[i].astype(float)
K_over_K2 = np.zeros(VT.shape(True), dtype=float)
for i in range(dim):
K_over_K2[i] = K[i] / np.where(K2 == 0, 1, K2)
# Velocity and pressure. Use ndarray view for efficiency
U = Array(VT)
U_hat = Function(VT)
P = Array(T)
P_hat = Function(T)
u_dealias = Array(VTp)
# Primary variable
u = U_hat
# RHS array
dU = Function(VT)
curl = Array(VT)
Source = Function(VT) # Possible source term initialized to zero
work = work_arrays()
hdf5file = NSFile(config.params.solver,
checkpoint={
'space': VT,
'data': {
'0': {
'U': [U_hat]
}
}
},
results={
'space': VT,
'data': {
'U': [U],
'P': [P]
}
})
return config.AttributeDict(locals())
def get_context():
float, complex, mpitype = datatypes(params.precision)
collapse_fourier = False if params.dealias == '3/2-rule' else True
dim = len(params.N)
dtype = lambda d: float if d == dim-1 else complex
V = [Basis(params.N[i], 'F', domain=(0, params.L[i]),
dtype=dtype(i)) for i in range(dim)]
kw0 = {'threads': params.threads,
'planner_effort': params.planner_effort['fft']}
T = TensorProductSpace(comm, V, dtype=float,
slab=(params.decomposition == 'slab'),
collapse_fourier=collapse_fourier, **kw0)
VT = VectorTensorProductSpace(T)
VM = MixedTensorProductSpace([T]*2*dim)
kw = {'padding_factor': 1.5 if params.dealias == '3/2-rule' else 1,
'dealias_direct': params.dealias == '2/3-rule'}
Vp = [Basis(params.N[i], 'F', domain=(0, params.L[i]),
dtype=dtype(i), **kw) for i in range(dim)]
Tp = TensorProductSpace(comm, Vp, dtype=float,
slab=(params.decomposition == 'slab'),
collapse_fourier=collapse_fourier, **kw0)
VTp = VectorTensorProductSpace(Tp)
VMp = MixedTensorProductSpace([Tp]*2*dim)
# Mesh variables
X = T.local_mesh(True)
K = T.local_wavenumbers(scaled=True)
for i in range(dim):
X[i] = X[i].astype(float)
K[i] = K[i].astype(float)
K2 = np.zeros(T.shape(True), dtype=float)
for i in range(dim):
K2 += K[i]*K[i]
# Set Nyquist frequency to zero on K that is, from now on, used for odd derivatives
Kx = T.local_wavenumbers(scaled=True, eliminate_highest_freq=True)
for i in range(dim):
Kx[i] = Kx[i].astype(float)
K_over_K2 = np.zeros(VT.shape(True), dtype=float)
for i in range(dim):
K_over_K2[i] = K[i] / np.where(K2 == 0, 1, K2)
UB = Array(VM)
P = Array(T)
curl = Array(VT)
UB_hat = Function(VM)
P_hat = Function(T)
dU = Function(VM)
Source = Array(VM)
ub_dealias = Array(VMp)
ZZ_hat = np.zeros((3, 3) + Tp.shape(True), dtype=complex) # Work array
# Create views into large data structures
U = UB[:3]
U_hat = UB_hat[:3]
B = UB[3:]
B_hat = UB_hat[3:]
# Primary variable
u = UB_hat
hdf5file = MHDFile(config.params.solver,
checkpoint={'space': VM,
'data': {'0': {'UB': [UB_hat]}}},
results={'space': VM,
'data': {'UB': [UB]}})
return config.AttributeDict(locals())