def preprocessor_laplacianeigenmaps_modular(data,k): from shogun.Features import RealFeatures from shogun.Preprocessor import LaplacianEigenmaps features = RealFeatures(data) preprocessor = LaplacianEigenmaps() preprocessor.set_target_dim(1) preprocessor.set_k(k) preprocessor.set_tau(2.0) preprocessor.apply_to_feature_matrix(features) return features
preprocs.append((lisomap,"K-LIsomap with k=%d, %d landmarks" % (lisomap.get_k(),lisomap.get_landmark_number())))
from shogun.Preprocessor import HessianLocallyLinearEmbedding
hlle = HessianLocallyLinearEmbedding()
hlle.set_k(6)
preprocs.append((hlle,"Hessian LLE with k=%d" % (hlle.get_k())))
from shogun.Preprocessor import LocalTangentSpaceAlignment
ltsa = LocalTangentSpaceAlignment()
ltsa.set_k(6)
preprocs.append((ltsa,"LTSA with k=%d" % (ltsa.get_k())))
from shogun.Preprocessor import LaplacianEigenmaps
le = LaplacianEigenmaps()
le.set_k(15)
le.set_tau(25.0)
preprocs.append((le,"Laplacian Eigenmaps with k=%d, tau=%d" % (le.get_k(),le.get_tau())))
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
fig = plt.figure()
swiss_roll_fig = fig.add_subplot(3,3,1,projection='3d')
swiss_roll_fig.scatter(X[0], X[1], X[2], s=10, c=tt, cmap=plt.cm.Spectral)
plt.subplots_adjust(hspace=0.4)
from shogun.Features import RealFeatures
for (i, (preproc, label)) in enumerate(preprocs):
X = numpy.genfromtxt('../../../../../data/toy/swissroll.dat',unpack=True).T
features = RealFeatures(X)
(lisomap.get_k(), lisomap.get_landmark_number())))
from shogun.Preprocessor import HessianLocallyLinearEmbedding
hlle = HessianLocallyLinearEmbedding()
hlle.set_k(6)
preprocs.append((hlle, "Hessian LLE with k=%d" % (hlle.get_k())))
from shogun.Preprocessor import LocalTangentSpaceAlignment
ltsa = LocalTangentSpaceAlignment()
ltsa.set_k(6)
preprocs.append((ltsa, "LTSA with k=%d" % (ltsa.get_k())))
from shogun.Preprocessor import LaplacianEigenmaps
le = LaplacianEigenmaps()
le.set_k(15)
le.set_tau(25.0)
preprocs.append(
(le, "Laplacian Eigenmaps with k=%d, tau=%d" % (le.get_k(), le.get_tau())))
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
fig = plt.figure()
swiss_roll_fig = fig.add_subplot(3, 3, 1, projection='3d')
swiss_roll_fig.scatter(X[0], X[1], X[2], s=10, c=tt, cmap=plt.cm.Spectral)
plt.subplots_adjust(hspace=0.4)
from shogun.Features import RealFeatures
for (i, (preproc, label)) in enumerate(preprocs):
X = numpy.genfromtxt('../../../../../data/toy/swissroll.dat',