class ModeView(qt.QWidget):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.hist = Plot1D(self)
self.stack = StackView(self)
self.stack.setColormap({'name': 'viridis', 'autoscale': True})
self.setLayout(qt.QHBoxLayout())
splitter = qt.QSplitter()
splitter.addWidget(self.hist)
splitter.addWidget(self.stack)
self.layout().addWidget(splitter)
def set_data(self, probes, psize):
ampl, nplist = ortho(probes)
edges = list(range(len(ampl)))
self.hist.addHistogram(ampl,
edges,
legend='data',
fill=True,
color='b')
self.hist.setGraphXLabel('Mode #')
self.hist.setGraphYLabel('Relative power $\\beta$')
self.stack.setStack(np.abs(np.array(nplist))**2)
zeta = leastsq(func=residuals, x0=.5, args=(ampl, ))[0][0]
self.hist.addCurve(edges, model(zeta, ampl), color='r', linewidth=2)
self.hist.setGraphYLimits(0, 1)
self.hist.setGraphTitle('$\\zeta$=%.2f (fit)' % zeta)
def setUp(self):
super(TestProfile3DToolBar, self).setUp()
self.plot = StackView()
self.plot.show()
self.qWaitForWindowExposed(self.plot)
self.plot.setStack(
numpy.array([[[0, 1, 2], [3, 4, 5]], [[6, 7, 8], [9, 10, 11]],
[[12, 13, 14], [15, 16, 17]]]))
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.hist = Plot1D(self)
self.stack = StackView(self)
self.stack.setColormap({'name': 'viridis', 'autoscale': True})
self.setLayout(qt.QHBoxLayout())
splitter = qt.QSplitter()
splitter.addWidget(self.hist)
splitter.addWidget(self.stack)
self.layout().addWidget(splitter)
def setUp(self):
super(TestProfile3DToolBar, self).setUp()
self.plot = StackView()
self.plot.show()
self.qWaitForWindowExposed(self.plot)
self.plot.setStack(numpy.array([
[[0, 1, 2], [3, 4, 5]],
[[6, 7, 8], [9, 10, 11]],
[[12, 13, 14], [15, 16, 17]]
]))
def testProfile2D(self):
"""Test that the profile plot associated to a stack view is either a
Plot1D or a plot 2D instance."""
self.plot = StackView()
self.plot.show()
self.qWaitForWindowExposed(self.plot)
self.plot.setStack(numpy.array([[[0, 1], [2, 3]], [[4, 5], [6, 7]]]))
toolBar = self.plot.getProfileToolbar()
manager = toolBar.getProfileManager()
roiManager = manager.getRoiManager()
roi = rois.ProfileImageStackHorizontalLineROI()
roi.setPosition(0.5)
roi.setProfileType("2D")
roiManager.addRoi(roi)
roiManager.setCurrentRoi(roi)
for _ in range(20):
self.qWait(200)
if not manager.hasPendingOperations():
break
profileWindow = roi.getProfileWindow()
self.assertIsInstance(roi.getProfileWindow(), qt.QMainWindow)
self.assertIsInstance(profileWindow.getCurrentPlotWidget(), Plot2D)
roi.setProfileType("1D")
for _ in range(20):
self.qWait(200)
if not manager.hasPendingOperations():
break
profileWindow = roi.getProfileWindow()
self.assertIsInstance(roi.getProfileWindow(), qt.QMainWindow)
self.assertIsInstance(profileWindow.getCurrentPlotWidget(), Plot1D)
def testProfile2D(self):
"""Test that the profile plot associated to a stack view is either a
Plot1D or a plot 2D instance."""
plot = StackView()
plot.show()
self.qWaitForWindowExposed(plot)
plot.setStack(numpy.array([[[0, 1], [2, 3]],
[[4, 5], [6, 7]]]))
self.assertIsInstance(plot.getProfileToolbar().getProfileMainWindow(),
qt.QMainWindow)
self.assertIsInstance(plot.getProfileToolbar().getProfilePlot(),
Plot2D)
plot.getProfileToolbar().profile3dAction.computeProfileIn1D()
self.assertIsInstance(plot.getProfileToolbar().getProfilePlot(),
Plot1D)
plot.setAttribute(qt.Qt.WA_DeleteOnClose)
plot.close()
del plot
class TestProfile3DToolBar(TestCaseQt):
"""Tests for Profile3DToolBar widget.
"""
def setUp(self):
super(TestProfile3DToolBar, self).setUp()
self.plot = StackView()
self.plot.show()
self.qWaitForWindowExposed(self.plot)
self.plot.setStack(numpy.array([
[[0, 1, 2], [3, 4, 5]],
[[6, 7, 8], [9, 10, 11]],
[[12, 13, 14], [15, 16, 17]]
]))
def tearDown(self):
self.plot.setAttribute(qt.Qt.WA_DeleteOnClose)
self.plot.close()
self.plot = None
super(TestProfile3DToolBar, self).tearDown()
def testMethodProfile1DAnd2D(self):
"""Test that the profile can have a different method if we want to
compute then in 1D or in 2D"""
_3DProfileToolbar = self.plot.getProfileToolbar()
_2DProfilePlot = _3DProfileToolbar.getProfilePlot()
self.plot.getProfileToolbar().setProfileMethod('mean')
self.plot.getProfileToolbar().lineWidthSpinBox.setValue(3)
self.assertTrue(_3DProfileToolbar.getProfileMethod() == 'mean')
# check 2D 'mean' profile
_3DProfileToolbar.profile3dAction.computeProfileIn2D()
toolButton = getQToolButtonFromAction(_3DProfileToolbar.vLineAction)
self.assertIsNot(toolButton, None)
self.mouseMove(toolButton)
self.mouseClick(toolButton, qt.Qt.LeftButton)
plot2D = self.plot.getPlot().getWidgetHandle()
pos1 = plot2D.width() * 0.5, plot2D.height() * 0.5
self.mouseClick(plot2D, qt.Qt.LeftButton, pos=pos1)
self.assertTrue(numpy.array_equal(
_2DProfilePlot.getActiveImage().getData(),
numpy.array([[1, 4], [7, 10], [13, 16]])
))
# check 1D 'sum' profile
_2DProfileToolbar = _2DProfilePlot.getProfileToolbar()
_2DProfileToolbar.setProfileMethod('sum')
self.assertTrue(_2DProfileToolbar.getProfileMethod() == 'sum')
_1DProfilePlot = _2DProfileToolbar.getProfilePlot()
_2DProfileToolbar.lineWidthSpinBox.setValue(3)
toolButton = getQToolButtonFromAction(_2DProfileToolbar.vLineAction)
self.assertIsNot(toolButton, None)
self.mouseMove(toolButton)
self.mouseClick(toolButton, qt.Qt.LeftButton)
plot1D = _2DProfilePlot.getWidgetHandle()
pos1 = plot1D.width() * 0.5, plot1D.height() * 0.5
self.mouseClick(plot1D, qt.Qt.LeftButton, pos=pos1)
self.assertTrue(numpy.array_equal(
_1DProfilePlot.getAllCurves()[0].getData()[1],
numpy.array([5, 17, 29])
))
def testMethodSumLine(self):
"""Simple interaction test to make sure the sum is correctly computed
"""
_3DProfileToolbar = self.plot.getProfileToolbar()
_2DProfilePlot = _3DProfileToolbar.getProfilePlot()
self.plot.getProfileToolbar().setProfileMethod('sum')
self.plot.getProfileToolbar().lineWidthSpinBox.setValue(3)
self.assertTrue(_3DProfileToolbar.getProfileMethod() == 'sum')
# check 2D 'mean' profile
_3DProfileToolbar.profile3dAction.computeProfileIn2D()
toolButton = getQToolButtonFromAction(_3DProfileToolbar.lineAction)
self.assertIsNot(toolButton, None)
self.mouseMove(toolButton)
self.mouseClick(toolButton, qt.Qt.LeftButton)
plot2D = self.plot.getPlot().getWidgetHandle()
pos1 = plot2D.width() * 0.5, plot2D.height() * 0.2
pos2 = plot2D.width() * 0.5, plot2D.height() * 0.8
self.mouseMove(plot2D, pos=pos1)
self.mousePress(plot2D, qt.Qt.LeftButton, pos=pos1)
self.mouseMove(plot2D, pos=pos2)
self.mouseRelease(plot2D, qt.Qt.LeftButton, pos=pos2)
self.assertTrue(numpy.array_equal(
_2DProfilePlot.getActiveImage().getData(),
numpy.array([[3, 12], [21, 30], [39, 48]])
))
def testProfile2D(self):
"""Test that the profile plot associated to a stack view is either a
Plot1D or a plot 2D instance."""
plot = StackView()
plot.show()
self.qWaitForWindowExposed(plot)
plot.setStack(numpy.array([[[0, 1], [2, 3]],
[[4, 5], [6, 7]]]))
self.assertIsInstance(plot.getProfileToolbar().getProfileMainWindow(),
qt.QMainWindow)
self.assertIsInstance(plot.getProfileToolbar().getProfilePlot(),
Plot2D)
plot.getProfileToolbar().profile3dAction.computeProfileIn1D()
self.assertIsInstance(plot.getProfileToolbar().getProfilePlot(),
Plot1D)
plot.setAttribute(qt.Qt.WA_DeleteOnClose)
plot.close()
del plot
class TestProfile3DToolBar(TestCaseQt):
"""Tests for Profile3DToolBar widget.
"""
def setUp(self):
super(TestProfile3DToolBar, self).setUp()
self.plot = StackView()
self.plot.show()
self.qWaitForWindowExposed(self.plot)
self.plot.setStack(numpy.array([
[[0, 1, 2], [3, 4, 5]],
[[6, 7, 8], [9, 10, 11]],
[[12, 13, 14], [15, 16, 17]]
]))
def tearDown(self):
self.plot.setAttribute(qt.Qt.WA_DeleteOnClose)
self.plot.close()
self.plot = None
super(TestProfile3DToolBar, self).tearDown()
def testMethodProfile1DAnd2D(self):
"""Test that the profile can have a different method if we want to
compute then in 1D or in 2D"""
_3DProfileToolbar = self.plot.getProfileToolbar()
_2DProfilePlot = _3DProfileToolbar.getProfilePlot()
self.plot.getProfileToolbar().setProfileMethod('mean')
self.plot.getProfileToolbar().lineWidthSpinBox.setValue(3)
self.assertTrue(_3DProfileToolbar.getProfileMethod() == 'mean')
# check 2D 'mean' profile
_3DProfileToolbar.profile3dAction.computeProfileIn2D()
toolButton = getQToolButtonFromAction(_3DProfileToolbar.vLineAction)
self.assertIsNot(toolButton, None)
self.mouseMove(toolButton)
self.mouseClick(toolButton, qt.Qt.LeftButton)
plot2D = self.plot.getPlot().getWidgetHandle()
pos1 = plot2D.width() * 0.5, plot2D.height() * 0.5
self.mouseClick(plot2D, qt.Qt.LeftButton, pos=pos1)
self.assertTrue(numpy.array_equal(
_2DProfilePlot.getActiveImage().getData(),
numpy.array([[1, 4], [7, 10], [13, 16]])
))
# check 1D 'sum' profile
_2DProfileToolbar = _2DProfilePlot.getProfileToolbar()
_2DProfileToolbar.setProfileMethod('sum')
self.assertTrue(_2DProfileToolbar.getProfileMethod() == 'sum')
_1DProfilePlot = _2DProfileToolbar.getProfilePlot()
_2DProfileToolbar.lineWidthSpinBox.setValue(3)
toolButton = getQToolButtonFromAction(_2DProfileToolbar.vLineAction)
self.assertIsNot(toolButton, None)
self.mouseMove(toolButton)
self.mouseClick(toolButton, qt.Qt.LeftButton)
plot1D = _2DProfilePlot.getWidgetHandle()
pos1 = plot1D.width() * 0.5, plot1D.height() * 0.5
self.mouseClick(plot1D, qt.Qt.LeftButton, pos=pos1)
self.assertTrue(numpy.array_equal(
_1DProfilePlot.getAllCurves()[0].getData()[1],
numpy.array([5, 17, 29])
))
def testMethodSumLine(self):
"""Simple interaction test to make sure the sum is correctly computed
"""
_3DProfileToolbar = self.plot.getProfileToolbar()
_2DProfilePlot = _3DProfileToolbar.getProfilePlot()
self.plot.getProfileToolbar().setProfileMethod('sum')
self.plot.getProfileToolbar().lineWidthSpinBox.setValue(3)
self.assertTrue(_3DProfileToolbar.getProfileMethod() == 'sum')
# check 2D 'mean' profile
_3DProfileToolbar.profile3dAction.computeProfileIn2D()
toolButton = getQToolButtonFromAction(_3DProfileToolbar.lineAction)
self.assertIsNot(toolButton, None)
self.mouseMove(toolButton)
self.mouseClick(toolButton, qt.Qt.LeftButton)
plot2D = self.plot.getPlot().getWidgetHandle()
pos1 = plot2D.width() * 0.5, plot2D.height() * 0.2
pos2 = plot2D.width() * 0.5, plot2D.height() * 0.8
self.mouseMove(plot2D, pos=pos1)
self.mousePress(plot2D, qt.Qt.LeftButton, pos=pos1)
self.mouseMove(plot2D, pos=pos2)
self.mouseRelease(plot2D, qt.Qt.LeftButton, pos=pos2)
self.assertTrue(numpy.array_equal(
_2DProfilePlot.getActiveImage().getData(),
numpy.array([[3, 12], [21, 30], [39, 48]])
))
class TestGetProfilePlot(TestCaseQt):
def setUp(self):
self.plot = None
super(TestGetProfilePlot, self).setUp()
def tearDown(self):
if self.plot is not None:
manager = self.plot.getProfileToolbar().getProfileManager()
manager.clearProfile()
manager = None
self.plot.setAttribute(qt.Qt.WA_DeleteOnClose)
self.plot.close()
self.plot = None
super(TestGetProfilePlot, self).tearDown()
def testProfile1D(self):
self.plot = Plot2D()
self.plot.show()
self.qWaitForWindowExposed(self.plot)
self.plot.addImage([[0, 1], [2, 3]])
toolBar = self.plot.getProfileToolbar()
manager = toolBar.getProfileManager()
roiManager = manager.getRoiManager()
roi = rois.ProfileImageHorizontalLineROI()
roi.setPosition(0.5)
roiManager.addRoi(roi)
roiManager.setCurrentRoi(roi)
for _ in range(20):
self.qWait(200)
if not manager.hasPendingOperations():
break
profileWindow = roi.getProfileWindow()
self.assertIsInstance(roi.getProfileWindow(), qt.QMainWindow)
self.assertIsInstance(profileWindow.getCurrentPlotWidget(), Plot1D)
def testProfile2D(self):
"""Test that the profile plot associated to a stack view is either a
Plot1D or a plot 2D instance."""
self.plot = StackView()
self.plot.show()
self.qWaitForWindowExposed(self.plot)
self.plot.setStack(numpy.array([[[0, 1], [2, 3]], [[4, 5], [6, 7]]]))
toolBar = self.plot.getProfileToolbar()
manager = toolBar.getProfileManager()
roiManager = manager.getRoiManager()
roi = rois.ProfileImageStackHorizontalLineROI()
roi.setPosition(0.5)
roi.setProfileType("2D")
roiManager.addRoi(roi)
roiManager.setCurrentRoi(roi)
for _ in range(20):
self.qWait(200)
if not manager.hasPendingOperations():
break
profileWindow = roi.getProfileWindow()
self.assertIsInstance(roi.getProfileWindow(), qt.QMainWindow)
self.assertIsInstance(profileWindow.getCurrentPlotWidget(), Plot2D)
roi.setProfileType("1D")
for _ in range(20):
self.qWait(200)
if not manager.hasPendingOperations():
break
profileWindow = roi.getProfileWindow()
self.assertIsInstance(roi.getProfileWindow(), qt.QMainWindow)
self.assertIsInstance(profileWindow.getCurrentPlotWidget(), Plot1D)
class TestProfile3DToolBar(TestCaseQt):
"""Tests for Profile3DToolBar widget.
"""
def setUp(self):
super(TestProfile3DToolBar, self).setUp()
self.plot = StackView()
self.plot.show()
self.qWaitForWindowExposed(self.plot)
self.plot.setStack(
numpy.array([[[0, 1, 2], [3, 4, 5]], [[6, 7, 8], [9, 10, 11]],
[[12, 13, 14], [15, 16, 17]]]))
deprecation.FORCE = True
def tearDown(self):
deprecation.FORCE = False
profileManager = self.plot.getProfileToolbar().getProfileManager()
profileManager.clearProfile()
profileManager = None
self.plot.setAttribute(qt.Qt.WA_DeleteOnClose)
self.plot.close()
self.plot = None
super(TestProfile3DToolBar, self).tearDown()
@testutils.test_logging(deprecation.depreclog.name, warning=2)
def testMethodProfile2D(self):
"""Test that the profile can have a different method if we want to
compute then in 1D or in 2D"""
toolBar = self.plot.getProfileToolbar()
toolBar.vLineAction.trigger()
plot2D = self.plot.getPlotWidget().getWidgetHandle()
pos1 = plot2D.width() * 0.5, plot2D.height() * 0.5
self.mouseClick(plot2D, qt.Qt.LeftButton, pos=pos1)
manager = toolBar.getProfileManager()
roi = manager.getCurrentRoi()
roi.setProfileMethod("mean")
roi.setProfileType("2D")
roi.setProfileLineWidth(3)
for _ in range(20):
self.qWait(200)
if not manager.hasPendingOperations():
break
# check 2D 'mean' profile
profilePlot = toolBar.getProfilePlot()
data = profilePlot.getAllImages()[0].getData()
expected = numpy.array([[1, 4], [7, 10], [13, 16]])
numpy.testing.assert_almost_equal(data, expected)
@testutils.test_logging(deprecation.depreclog.name, warning=2)
def testMethodSumLine(self):
"""Simple interaction test to make sure the sum is correctly computed
"""
toolBar = self.plot.getProfileToolbar()
toolBar.lineAction.trigger()
plot2D = self.plot.getPlotWidget().getWidgetHandle()
pos1 = plot2D.width() * 0.5, plot2D.height() * 0.2
pos2 = plot2D.width() * 0.5, plot2D.height() * 0.8
self.mouseMove(plot2D, pos=pos1)
self.mousePress(plot2D, qt.Qt.LeftButton, pos=pos1)
self.mouseMove(plot2D, pos=pos2)
self.mouseRelease(plot2D, qt.Qt.LeftButton, pos=pos2)
manager = toolBar.getProfileManager()
roi = manager.getCurrentRoi()
roi.setProfileMethod("sum")
roi.setProfileType("2D")
roi.setProfileLineWidth(3)
for _ in range(20):
self.qWait(200)
if not manager.hasPendingOperations():
break
# check 2D 'sum' profile
profilePlot = toolBar.getProfilePlot()
data = profilePlot.getAllImages()[0].getData()
expected = numpy.array([[3, 12], [21, 30], [39, 48]])
numpy.testing.assert_almost_equal(data, expected)