def test_create_tiffs(self): seq = sima.Sequence.create( 'TIFFs', [[example_tiffs(), example_tiffs()], [example_tiffs(), example_tiffs()], [example_tiffs(), example_tiffs()], [example_tiffs(), example_tiffs()]]) assert_equal(seq.shape, (3, 4, 173, 173, 2))
def setup(self): global tmp_dir path = example_hdf5() seq = Sequence.create('HDF5', path, 'yxt') self.filepath = os.path.join(tmp_dir, "test_imaging_dataset.sima") self.ds = ImagingDataset([seq, seq], self.filepath) self.filepath_tiffs = os.path.join(tmp_dir, "test_dataset_tiffs.sima") seq = Sequence.create( 'TIFFs', [[example_tiffs(), example_tiffs()], [example_tiffs(), example_tiffs()], [example_tiffs(), example_tiffs()], [example_tiffs(), example_tiffs()]]) self.ds_tiffs = ImagingDataset([seq, seq], self.filepath_tiffs)