def test_at_bird(numiter):
params_matrix = get_params_matrix()
try:
output = sip_model.at_bird(
params_matrix.get("ld50")[numiter],
params_matrix.get("aw_bird")[numiter],
params_matrix.get("tw_bird")[numiter],
params_matrix.get("mineau")[numiter],
)
print "Test of function name: %s expected: %i != calculated: %i" % (
"at_bird",
params_matrix.get("at_bird_out")[numiter],
output,
)
assert round(output, 3) == round(params_matrix["at_bird_out"][numiter], 3)
except ZeroDivisionError:
if params_matrix.get("at_bird_out")[numiter] == None:
assert True
else:
traceback.print_exc(file=sys.stdout)
assert False
except ValueError:
if (
params_matrix.get("aw_bird")[numiter] < 0
or params_matrix.get("tw_bird")[numiter] <= 0
or params_matrix.get("ld50")[numiter] < 0
or params_matrix.get("mineau")[numiter] < 0
):
assert True
else:
assert False
except Exception:
if params_matrix.get("at_bird_out")[numiter] == None:
print "Test threw expected Error"
assert True
else:
print "Test threw unexpected Error"
traceback.print_exc(file=sys.stdout)
assert False
def post(self):
form = cgi.FieldStorage()
chemical_name = form.getvalue('chemical_name')
select_receptor = form.getvalue('select_receptor')
bw_bird = form.getvalue('body_weight_of_bird')
bw_mamm = form.getvalue('body_weight_of_mammal')
sol = form.getvalue('solubility')
ld50 = form.getvalue('ld50')
aw_bird = form.getvalue('body_weight_of_the_assessed_bird')
tw_bird = form.getvalue('body_weight_of_the_tested_bird')
aw_mamm = form.getvalue('body_weight_of_the_assessed_mammal')
tw_mamm = form.getvalue('body_weight_of_the_tested_mammal')
mineau = form.getvalue('mineau_scaling_factor')
noaec = form.getvalue('NOAEC')
noael = form.getvalue('NOAEL')
text_file = open('sip/sip_description.txt','r')
x = text_file.read()
templatepath = os.path.dirname(__file__) + '/../templates/'
html = template.render(templatepath + '01uberheader.html', {'title':'Ubertool'})
html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html', {'model':'sip','page':'output'})
html = html + template.render (templatepath + '03ubertext_links_left.html', {})
html = html + template.render(templatepath + '04uberoutput_start.html', {
'model':'sip',
'model_attributes':'SIP Output'})
html = html + """
<table border="1" class="out_1">
<tr>
<th>User Inputs</th>
<th>Values</th>
<th>Units</th>
</tr>
<tr>
<td>Chemical Name</td>
<td>%s</td>
<td></td>
</tr>
<tr>
<td>Receptor Selected</td>
<td>%s</td>
<td></td>
</tr>
<tr>
<td>Body Weight of Bird</td>
<td>%s</td>
<td>kg</td>
</tr>
<tr>
<td>Body Weight of Mammal</td>
<td>%s</td>
<td>kg</td>
</tr>
<tr>
<td>Solubility</td>
<td>%s</td>
<td>mg/L</td>
</tr>
<tr>
<td>LD<sub>50</sub></td>
<td>%s</td>
<td>mg/kg</td>
</tr>
<tr>
<td>Body Weight of Assessed Bird</td>
<td>%s</td>
<td>kg</td>
</tr>
<tr>
<td>Body Weight of Tested Bird</td>
<td>%s</td>
<td>kg</td>
</tr>
<tr>
<td>Body Weight of Assessed Mammal</td>
<td>%s</td>
<td>kg</td>
</tr>
<tr>
<td>Body Weight of Tested Mammal</td>
<td>%s</td>
<td>kg</td>
</tr>
<tr>
<td>Mineau Scaling Factor</td>
<td>%s</td>
<td></td>
</tr>
<tr>
<td>NOAEC</td>
<td>%s</td>
<td>mg/kg</td>
</tr>
<tr>
<td>NOAEL</td>
<td>%s</td>
<td>mg/kg</td>
</tr>
</table>
<br>
""" % (chemical_name, select_receptor, bw_bird, bw_mamm, sol, ld50, aw_bird, tw_bird, aw_mamm, tw_mamm, mineau, noaec, noael)
html = html + """
<table border="1" class="out_2">
<tr>
<th>SIP Outputs</th>
<th>Mammalian Results (%s kg)</th>
<th></th>
</tr>
<tr>
<td>Parameter</td>
<td>Acute</td>
<td>Chronic</td>
</tr>
<tr>
<td>Upper Bound Exposure</td>
<td>%0.2E mg/kg-bw</td>
<td>%0.2E mg/kg-bw</td>
</tr>
<tr>
<td>Adjusted Toxicity Value</td>
<td>%0.2E mg/kg-bw</td>
<td>%0.2E mg/kg-bw</td>
</tr>
<tr>
<td>Ratio of Exposure to Toxicity</td>
<td>%0.2E</td>
<td>%0.2E</td>
</tr>
<tr>
<td>Conclusion</td>
<td><font color="red">%s</font></td>
<td><font color="red">%s</font></td>
</tr>
</table><br>
<table border="1" class="out_3">
<tr>
<th>SIP Outputs</th>
<th>>Avian Results (%s kg)</th>
<th></th>
</tr>
<tr>
<td>Parameter</td>
<td>Acute</td>
<td>Chronic</td>
</tr>
<tr>
<td>Upper Bound Exposure</td>
<td>%0.2E mg/kg-bw</td>
<td>%0.2E mg/kg-bw</td>
</tr>
<tr>
<td>Adjusted Toxicity Value</td>
<td>%0.2E mg/kg-bw</td>
<td>%0.2E mg/kg-bw</td>
</tr>
<tr>
<td>Ratio of Exposure to Toxicity</td>
<td>%0.2E</td>
<td>%0.2E</td>
</tr>
<tr>
<td>Conclusion</td>
<td><font color="red">%s</font></td>
<td><font color="red">%s</font></td>
</tr>
</table>
""" % (aw_mamm,
sip_model.dose_mamm(sip_model.fw_mamm(bw_mamm),sol,bw_mamm),
sip_model.dose_mamm(sip_model.fw_mamm(bw_mamm),sol,bw_mamm),
sip_model.at_mamm(ld50,aw_mamm,tw_mamm),
sip_model.act(noael,tw_mamm,aw_mamm),
sip_model.acute_mamm(sip_model.dose_mamm(sip_model.fw_mamm(bw_mamm),sol,bw_mamm),sip_model.at_mamm(ld50,aw_mamm,tw_mamm)),
sip_model.chron_mamm(sip_model.dose_mamm(sip_model.fw_mamm(bw_mamm),sol,bw_mamm),sip_model.act(noael,tw_mamm,aw_mamm)),
sip_model.acuconm(sip_model.acute_mamm(sip_model.dose_mamm(sip_model.fw_mamm(bw_mamm),sol,bw_mamm),sip_model.at_mamm(ld50,aw_mamm,tw_mamm))),
sip_model.chronconm(sip_model.chron_mamm(sip_model.dose_mamm(sip_model.fw_mamm(bw_mamm),sol,bw_mamm),sip_model.act(noael,tw_mamm,aw_mamm))),
aw_bird,
sip_model.dose_bird(sip_model.fw_bird(bw_bird),sol,bw_bird),
sip_model.dose_bird(sip_model.fw_bird(bw_bird),sol,bw_bird),
sip_model.at_bird(ld50,aw_bird,tw_bird,mineau),
sip_model.det(noaec,sip_model.fi_bird(bw_bird),bw_bird),
sip_model.acute_bird(sip_model.dose_bird(sip_model.fw_bird(bw_bird),sol,bw_bird),sip_model.at_bird(ld50,aw_bird,tw_bird,mineau)),
sip_model.chron_bird(sip_model.dose_bird(sip_model.fw_bird(bw_bird),sol,bw_bird),sip_model.det(noaec,sip_model.fi_bird(bw_bird),bw_bird)),
sip_model.acuconb(sip_model.acute_bird(sip_model.dose_bird(sip_model.fw_bird(bw_bird),sol,bw_bird),sip_model.at_bird(ld50,aw_bird,tw_bird,mineau))),
sip_model.chronconb(sip_model.chron_bird(sip_model.dose_bird(sip_model.fw_bird(bw_bird),sol,bw_bird),sip_model.det(noaec,sip_model.fi_bird(bw_bird),bw_bird))))
html = html + """
#pre-table 1
<table>
<tr><H3>User Inputs: Chemical Identity</H3></tr>
<tr><H4>Application and Chemical Information</H4></tr>
<tr></tr>
</table>
"""
pvuheadings = sip_tables.getheaderpvu()
pvrheadings = sip_tables.getheaderpvr()
djtemplate = sip_tables.getdjtemplate()
tmpl = Template(djtemplate)
#table 1
t1data = sip_tables.gett1data(chemical_name, select_receptor, bw_bird, bw_mamm, sol, ld50, aw_bird, tw_bird, aw_mamm, tw_mamm, mineau, noaec, noael)
t1rows = sip_tables.gethtmlrowsfromcols(t1data,pvuheadings)
html = html + tmpl.render(Context(dict(data=t1rows, headings=pvuheadings)))
html = html + """
#pre-table 2
<table>
<tr><H3>Outputs: Chemical Identity</H3></tr>
<tr><H4>Application and Chemical Information</H4></tr>
<tr></tr>
</table>
"""
#table 2
t2data = sip_tables.gett2data(aw_bird, bw_bird, sol, ld50, tw_bird, mineau, noaec)
t2rows = sip_tables.gethtmlrowsfromcols(t1data,pvuheadings)
html = html + tmpl.render(Context(dict(data=t1rows, headings=pvuheadings)))
html = html + template.render(templatepath + 'export.html', {})
html = html + template.render(templatepath + '04uberoutput_end.html', {})
html = html + template.render(templatepath + '06uberfooter.html', {'links': ''})
self.response.out.write(html)