def test_fi_bird(numiter): params_matrix = get_params_matrix() try: output = sip_model.fi_bird(params_matrix.get("bw_bird")[numiter]) print "Test of function name: %s expected: %i != calculated: %i" % ( "fi_bird", params_matrix.get("fi_bird_out")[numiter], output, ) assert round(output, 3) == round(params_matrix["fi_bird_out"][numiter], 3) except ZeroDivisionError: if params_matrix.get("fi_bird_out")[numiter] == None: assert True else: assert False except ValueError: if params_matrix.get("bw_bird")[numiter] < 0: assert True else: assert False except Exception: if params_matrix.get("fi_bird_out")[numiter] == None: print "Test threw expected Error" assert True else: print "Test threw unexpected Error" traceback.print_exc(file=sys.stdout) assert False
def post(self): form = cgi.FieldStorage() chemical_name = form.getvalue('chemical_name') select_receptor = form.getvalue('select_receptor') bw_bird = form.getvalue('body_weight_of_bird') bw_mamm = form.getvalue('body_weight_of_mammal') sol = form.getvalue('solubility') ld50 = form.getvalue('ld50') aw_bird = form.getvalue('body_weight_of_the_assessed_bird') tw_bird = form.getvalue('body_weight_of_the_tested_bird') aw_mamm = form.getvalue('body_weight_of_the_assessed_mammal') tw_mamm = form.getvalue('body_weight_of_the_tested_mammal') mineau = form.getvalue('mineau_scaling_factor') noaec = form.getvalue('NOAEC') noael = form.getvalue('NOAEL') text_file = open('sip/sip_description.txt','r') x = text_file.read() templatepath = os.path.dirname(__file__) + '/../templates/' html = template.render(templatepath + '01uberheader.html', {'title':'Ubertool'}) html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html', {'model':'sip','page':'output'}) html = html + template.render (templatepath + '03ubertext_links_left.html', {}) html = html + template.render(templatepath + '04uberoutput_start.html', { 'model':'sip', 'model_attributes':'SIP Output'}) html = html + """ <table border="1" class="out_1"> <tr> <th>User Inputs</th> <th>Values</th> <th>Units</th> </tr> <tr> <td>Chemical Name</td> <td>%s</td> <td></td> </tr> <tr> <td>Receptor Selected</td> <td>%s</td> <td></td> </tr> <tr> <td>Body Weight of Bird</td> <td>%s</td> <td>kg</td> </tr> <tr> <td>Body Weight of Mammal</td> <td>%s</td> <td>kg</td> </tr> <tr> <td>Solubility</td> <td>%s</td> <td>mg/L</td> </tr> <tr> <td>LD<sub>50</sub></td> <td>%s</td> <td>mg/kg</td> </tr> <tr> <td>Body Weight of Assessed Bird</td> <td>%s</td> <td>kg</td> </tr> <tr> <td>Body Weight of Tested Bird</td> <td>%s</td> <td>kg</td> </tr> <tr> <td>Body Weight of Assessed Mammal</td> <td>%s</td> <td>kg</td> </tr> <tr> <td>Body Weight of Tested Mammal</td> <td>%s</td> <td>kg</td> </tr> <tr> <td>Mineau Scaling Factor</td> <td>%s</td> <td></td> </tr> <tr> <td>NOAEC</td> <td>%s</td> <td>mg/kg</td> </tr> <tr> <td>NOAEL</td> <td>%s</td> <td>mg/kg</td> </tr> </table> <br> """ % (chemical_name, select_receptor, bw_bird, bw_mamm, sol, ld50, aw_bird, tw_bird, aw_mamm, tw_mamm, mineau, noaec, noael) html = html + """ <table border="1" class="out_2"> <tr> <th>SIP Outputs</th> <th>Mammalian Results (%s kg)</th> <th></th> </tr> <tr> <td>Parameter</td> <td>Acute</td> <td>Chronic</td> </tr> <tr> <td>Upper Bound Exposure</td> <td>%0.2E mg/kg-bw</td> <td>%0.2E mg/kg-bw</td> </tr> <tr> <td>Adjusted Toxicity Value</td> <td>%0.2E mg/kg-bw</td> <td>%0.2E mg/kg-bw</td> </tr> <tr> <td>Ratio of Exposure to Toxicity</td> <td>%0.2E</td> <td>%0.2E</td> </tr> <tr> <td>Conclusion</td> <td><font color="red">%s</font></td> <td><font color="red">%s</font></td> </tr> </table><br> <table border="1" class="out_3"> <tr> <th>SIP Outputs</th> <th>>Avian Results (%s kg)</th> <th></th> </tr> <tr> <td>Parameter</td> <td>Acute</td> <td>Chronic</td> </tr> <tr> <td>Upper Bound Exposure</td> <td>%0.2E mg/kg-bw</td> <td>%0.2E mg/kg-bw</td> </tr> <tr> <td>Adjusted Toxicity Value</td> <td>%0.2E mg/kg-bw</td> <td>%0.2E mg/kg-bw</td> </tr> <tr> <td>Ratio of Exposure to Toxicity</td> <td>%0.2E</td> <td>%0.2E</td> </tr> <tr> <td>Conclusion</td> <td><font color="red">%s</font></td> <td><font color="red">%s</font></td> </tr> </table> """ % (aw_mamm, sip_model.dose_mamm(sip_model.fw_mamm(bw_mamm),sol,bw_mamm), sip_model.dose_mamm(sip_model.fw_mamm(bw_mamm),sol,bw_mamm), sip_model.at_mamm(ld50,aw_mamm,tw_mamm), sip_model.act(noael,tw_mamm,aw_mamm), sip_model.acute_mamm(sip_model.dose_mamm(sip_model.fw_mamm(bw_mamm),sol,bw_mamm),sip_model.at_mamm(ld50,aw_mamm,tw_mamm)), sip_model.chron_mamm(sip_model.dose_mamm(sip_model.fw_mamm(bw_mamm),sol,bw_mamm),sip_model.act(noael,tw_mamm,aw_mamm)), sip_model.acuconm(sip_model.acute_mamm(sip_model.dose_mamm(sip_model.fw_mamm(bw_mamm),sol,bw_mamm),sip_model.at_mamm(ld50,aw_mamm,tw_mamm))), sip_model.chronconm(sip_model.chron_mamm(sip_model.dose_mamm(sip_model.fw_mamm(bw_mamm),sol,bw_mamm),sip_model.act(noael,tw_mamm,aw_mamm))), aw_bird, sip_model.dose_bird(sip_model.fw_bird(bw_bird),sol,bw_bird), sip_model.dose_bird(sip_model.fw_bird(bw_bird),sol,bw_bird), sip_model.at_bird(ld50,aw_bird,tw_bird,mineau), sip_model.det(noaec,sip_model.fi_bird(bw_bird),bw_bird), sip_model.acute_bird(sip_model.dose_bird(sip_model.fw_bird(bw_bird),sol,bw_bird),sip_model.at_bird(ld50,aw_bird,tw_bird,mineau)), sip_model.chron_bird(sip_model.dose_bird(sip_model.fw_bird(bw_bird),sol,bw_bird),sip_model.det(noaec,sip_model.fi_bird(bw_bird),bw_bird)), sip_model.acuconb(sip_model.acute_bird(sip_model.dose_bird(sip_model.fw_bird(bw_bird),sol,bw_bird),sip_model.at_bird(ld50,aw_bird,tw_bird,mineau))), sip_model.chronconb(sip_model.chron_bird(sip_model.dose_bird(sip_model.fw_bird(bw_bird),sol,bw_bird),sip_model.det(noaec,sip_model.fi_bird(bw_bird),bw_bird)))) html = html + """ #pre-table 1 <table> <tr><H3>User Inputs: Chemical Identity</H3></tr> <tr><H4>Application and Chemical Information</H4></tr> <tr></tr> </table> """ pvuheadings = sip_tables.getheaderpvu() pvrheadings = sip_tables.getheaderpvr() djtemplate = sip_tables.getdjtemplate() tmpl = Template(djtemplate) #table 1 t1data = sip_tables.gett1data(chemical_name, select_receptor, bw_bird, bw_mamm, sol, ld50, aw_bird, tw_bird, aw_mamm, tw_mamm, mineau, noaec, noael) t1rows = sip_tables.gethtmlrowsfromcols(t1data,pvuheadings) html = html + tmpl.render(Context(dict(data=t1rows, headings=pvuheadings))) html = html + """ #pre-table 2 <table> <tr><H3>Outputs: Chemical Identity</H3></tr> <tr><H4>Application and Chemical Information</H4></tr> <tr></tr> </table> """ #table 2 t2data = sip_tables.gett2data(aw_bird, bw_bird, sol, ld50, tw_bird, mineau, noaec) t2rows = sip_tables.gethtmlrowsfromcols(t1data,pvuheadings) html = html + tmpl.render(Context(dict(data=t1rows, headings=pvuheadings))) html = html + template.render(templatepath + 'export.html', {}) html = html + template.render(templatepath + '04uberoutput_end.html', {}) html = html + template.render(templatepath + '06uberfooter.html', {'links': ''}) self.response.out.write(html)