def test__identify_sample_groups_not_strict(self):
# Defines the know values
known_pairs = {
1: [
np.array(['PP'], dtype=object),
np.array(['CD', 'NR'], dtype=object)
],
0: [
np.array(['MM', 'WM'], dtype=object),
np.array(['MH'], dtype=object)
],
2:
[np.array(['GW'], dtype=object),
np.array(['CB'], dtype=object)]
}
known_index = np.array([0, 1, 2])
test_pairs, test_index = _identify_sample_groups(self.meta,
'INT', ['SEX', 'ABX'],
order=['N', 'Y'],
strict_match=False)
self.assertEqual(known_pairs.keys(), test_pairs.keys())
for k in known_pairs:
for i in range(2):
npt.assert_array_equal(known_pairs[k][i], test_pairs[k][i])
npt.assert_array_equal(known_index, test_index)
def test__identify_sample_groups_not_strict(self):
# Defines the know values
known_pairs = {0: [['PP'], ['CD', 'NR']],
1: [['MM', 'WM'], ['MH']],
2: [['GW'], ['CB']]}
known_index = np.array([0, 1, 2])
test_pairs, test_index = _identify_sample_groups(self.meta,
'INT',
['SEX', 'ABX'],
order=['N', 'Y'],
strict_match=False)
self.assertEqual(known_pairs.keys(), test_pairs.keys())
self.assertEqual(sorted(known_pairs.values()),
sorted(test_pairs.values()))
npt.assert_array_equal(known_index, test_index)
def test__identify_sample_groups(self):
# Defines the know values
known_pairs = {0: [['MM'], ['CD']],
1: [['SR'], ['LF']],
2: [['TS'], ['PC']],
3: [['GW'], ['CB']],
4: [['PP'], ['MH']],
5: [['WM'], ['NR']]}
known_index = np.array([0, 1, 2, 3, 4, 5])
test_pairs, test_index = _identify_sample_groups(self.meta,
'INT',
['SEX', 'AGE'],
order=['N', 'Y'],
strict_match=True)
self.assertEqual(known_pairs.keys(), test_pairs.keys())
self.assertEqual(sorted(known_pairs.values()),
sorted(test_pairs.values()))
npt.assert_array_equal(known_index, test_index)
def test__identify_sample_groups_not_strict(self):
# Defines the know values
known_pairs = {1: [np.array(['PP'], dtype=object),
np.array(['CD', 'NR'], dtype=object)],
0: [np.array(['MM', 'WM'], dtype=object),
np.array(['MH'], dtype=object)],
2: [np.array(['GW'], dtype=object),
np.array(['CB'], dtype=object)]}
known_index = np.array([0, 1, 2])
test_pairs, test_index = _identify_sample_groups(self.meta,
'INT',
['SEX', 'ABX'],
order=['N', 'Y'],
strict_match=False)
self.assertEqual(known_pairs.keys(), test_pairs.keys())
for k in known_pairs:
for i in range(2):
npt.assert_array_equal(known_pairs[k][i], test_pairs[k][i])
npt.assert_array_equal(known_index, test_index)
