def todense(self, out=None, allocator=mem_alloc, stream=None):
if out is None:
out = gpuarray.empty(self.shape, allocator=allocator, dtype=self.dtype, order="C")
if self.nnz == 0: # weird but happens
out.fill(0.0, stream=stream)
return out
# we need to out-of-place transpose if we want rowmajor outputs
# thus we need a temporary to store our results
if out.flags.c_contiguous:
tmp = gpuarray.empty(self.shape, allocator=allocator, dtype=self.dtype, order="C")
else:
tmp = out
if stream is not None:
cusparse.cusparseSetStream(cusparse_handle, stream.handle)
cublas.cublasSetStream(cublas_handle, stream.handle)
cusparse.cusparseScsr2dense(cusparse_handle, self.shape[0],
self.shape[1], self.descr, self.data.gpudata, self.indptr.gpudata,
self.indices.gpudata, tmp.gpudata, tmp.shape[0])
if out.flags.c_contiguous:
cublas.cublasSgeam(cublas_handle, 1, 1, tmp.shape[1], tmp.shape[0],
1.0, tmp.gpudata, tmp.shape[0],
0.0, 0, tmp.shape[0], out.gpudata, out.shape[1])
if stream is not None:
cusparse.cusparseSetStream(cusparse_handle, 0)
cublas.cublasSetStream(cublas_handle, 0)
return out
def test_cublasSgeam(self):
a = np.random.rand(2, 3).astype(np.float32)
b = np.random.rand(2, 3).astype(np.float32)
a_gpu = gpuarray.to_gpu(a.copy())
b_gpu = gpuarray.to_gpu(b.copy())
c_gpu = gpuarray.zeros_like(a_gpu)
alpha = np.float32(np.random.rand())
beta = np.float32(np.random.rand())
cublas.cublasSgeam(self.cublas_handle, 'n', 'n', 2, 3, alpha,
a_gpu.gpudata, 2, beta, b_gpu.gpudata, 2,
c_gpu.gpudata, 2)
assert np.allclose(c_gpu.get(), alpha * a + beta * b)
def todense(self, out=None, allocator=mem_alloc, stream=None):
if out is None:
out = gpuarray.empty(self.shape, allocator=allocator, dtype=self.dtype, order="C")
if self.nnz == 0: # weird but happens
out.fill(0.0, stream=stream)
return out
# we need to out-of-place transpose if we want rowmajor outputs
# thus we need a temporary to store our results
if out.flags.c_contiguous:
tmp = gpuarray.empty(self.shape, allocator=allocator, dtype=self.dtype, order="C")
else:
tmp = out
if stream is not None:
cusparse.cusparseSetStream(cusparse_handle, stream.handle)
cublas.cublasSetStream(cublas_handle, stream.handle)
cusparse.cusparseScsr2dense(
cusparse_handle,
self.shape[0],
self.shape[1],
self.descr,
self.data.gpudata,
self.indptr.gpudata,
self.indices.gpudata,
tmp.gpudata,
tmp.shape[0],
)
if out.flags.c_contiguous:
cublas.cublasSgeam(
cublas_handle,
1,
1,
tmp.shape[1],
tmp.shape[0],
1.0,
tmp.gpudata,
tmp.shape[0],
0.0,
0,
tmp.shape[0],
out.gpudata,
out.shape[1],
)
if stream is not None:
cusparse.cusparseSetStream(cusparse_handle, 0)
cublas.cublasSetStream(cublas_handle, 0)
return out
def test_cublasSgeam(self):
a = np.random.rand(2, 3).astype(np.float32)
b = np.random.rand(2, 3).astype(np.float32)
a_gpu = gpuarray.to_gpu(a.copy())
b_gpu = gpuarray.to_gpu(b.copy())
c_gpu = gpuarray.zeros_like(a_gpu)
alpha = np.float32(np.random.rand())
beta = np.float32(np.random.rand())
cublas.cublasSgeam(self.cublas_handle, 'n', 'n', 2, 3,
alpha, a_gpu.gpudata, 2,
beta, b_gpu.gpudata, 2,
c_gpu.gpudata, 2)
assert np.allclose(c_gpu.get(), alpha*a+beta*b)
def csrmm2(A_gpu, B_gpu, C_gpu, transA=False, transB=False, alpha=1.0, beta=0.0):
''' Calculates C += alpha * A*B + beta*C.
Where A is sparse and both A and B can be transposed.
'''
if transA:
ta = cusparse.CUSPARSE_OPERATION_TRANSPOSE
n, l = A_gpu.shape[1], A_gpu.shape[0]
else:
ta = cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
n, l = A_gpu.shape
if (B_gpu.flags.c_contiguous and transB) or (B_gpu.flags.f_contiguous and not transB):
tb = cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
else:
tb = cusparse.CUSPARSE_OPERATION_TRANSPOSE
k, m = (B_gpu.shape[1], B_gpu.shape[0]) if transB else B_gpu.shape
assert (l == k) and (n, m) == C_gpu.shape
ldb = B_gpu.shape[1] if B_gpu.flags.c_contiguous else B_gpu.shape[0]
ldc = C_gpu.shape[0]
# if C-major, save result into a temp array and transpose afterwards
if C_gpu.flags.c_contiguous:
out = __cuda_get_temp_matrix(C_gpu.shape, C_gpu.dtype)
if beta != 0.0:
memcpy_dtod(out.gpudata, C_gpu.gpudata, C_gpu.nbytes)
else:
out = C_gpu
cusparse.cusparseScsrmm2(cusparse_handle, ta, tb,
n, m, k, A_gpu.nnz, alpha,
A_gpu.descr, A_gpu.data.gpudata, A_gpu.indptr.gpudata, A_gpu.indices.gpudata,
B_gpu.gpudata, ldb, beta, out.gpudata, ldc)
if C_gpu.flags.c_contiguous:
cublas.cublasSgeam(cublas_handle, 1, 1, m, n,
1.0, out.gpudata, C_gpu.shape[0],
0.0, 0, C_gpu.shape[0], C_gpu.gpudata, C_gpu.shape[1])
return C_gpu
def csrmmB(A_gpu, B_gpu, C_gpu, transA=False, transB=False, alpha=1.0, beta=0.0):
''' Calculates C += alpha * A*B + beta*C.
Where B is sparse and both A and B can be transposed.
Note: cuSPARSE only allows for sparse A, so we need some tricks:
Essentially, we will compute C^T = B^T * A^T
By enforcing C to be row-major, can drop its transpose
since cuSPARSE assumes column-major. Thus, we only need to
compute
C = op(B)^T * op(A)^T
'''
assert C_gpu.flags.c_contiguous
m, k = B_gpu.shape
ta = cusparse.CUSPARSE_OPERATION_TRANSPOSE if not transB else cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
if transA:
if ta: # we can't have ta and tb true at the same time according to cuSPARSE docs
out = __cuda_get_temp_matrix(A_gpu.shape, A_gpu.dtype)
cublas.cublasSgeam(cublas_handle, 1, 1, A_gpu.shape[0], A_gpu.shape[1], 1.0, A_gpu.gpudata, A_gpu.shape[1],
0.0, A_gpu.gpudata, A_gpu.shape[1], out.gpudata, A_gpu.shape[0])
out.shape = A_gpu.shape[1], A_gpu.shape[0]
out.strides = gpuarray._c_contiguous_strides(out.dtype.itemsize, out.shape)
A_gpu = out
tb = cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
n = A_gpu.shape[0]
else:
tb = cusparse.CUSPARSE_OPERATION_TRANSPOSE
n = A_gpu.shape[1]
else:
tb = cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
n = A_gpu.shape[0]
ldb = A_gpu.shape[1]
ldc = C_gpu.shape[1]
cusparse.cusparseScsrmm2(cusparse_handle, ta, tb,
m, n, k, B_gpu.nnz, alpha,
B_gpu.descr, B_gpu.data.gpudata, B_gpu.indptr.gpudata, B_gpu.indices.gpudata,
A_gpu.gpudata, ldb, beta, C_gpu.gpudata, ldc)
return C_gpu
def csrmmB(A_gpu, B_gpu, C_gpu, transA=False, transB=False, alpha=1.0, beta=0.0):
""" Calculates C += alpha * A*B + beta*C.
Where B is sparse and both A and B can be transposed.
Note: cuSPARSE only allows for sparse A, so we need some tricks:
Essentially, we will compute C^T = B^T * A^T
By enforcing C to be row-major, can drop its transpose
since cuSPARSE assumes column-major. Thus, we only need to
compute
C = op(B)^T * op(A)^T
"""
assert C_gpu.flags.c_contiguous
m, k = B_gpu.shape
ta = cusparse.CUSPARSE_OPERATION_TRANSPOSE if not transB else cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
if transA:
if ta: # we can't have ta and tb true at the same time according to cuSPARSE docs
out = __cuda_get_temp_matrix(A_gpu.shape, A_gpu.dtype)
cublas.cublasSgeam(
cublas_handle,
1,
1,
A_gpu.shape[0],
A_gpu.shape[1],
1.0,
A_gpu.gpudata,
A_gpu.shape[1],
0.0,
A_gpu.gpudata,
A_gpu.shape[1],
out.gpudata,
A_gpu.shape[0],
)
out.shape = A_gpu.shape[1], A_gpu.shape[0]
out.strides = gpuarray._c_contiguous_strides(out.dtype.itemsize, out.shape)
A_gpu = out
tb = cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
n = A_gpu.shape[0]
else:
tb = cusparse.CUSPARSE_OPERATION_TRANSPOSE
n = A_gpu.shape[1]
else:
tb = cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
n = A_gpu.shape[0]
ldb = A_gpu.shape[1]
ldc = C_gpu.shape[1]
cusparse.cusparseScsrmm2(
cusparse_handle,
ta,
tb,
m,
n,
k,
B_gpu.nnz,
alpha,
B_gpu.descr,
B_gpu.data.gpudata,
B_gpu.indptr.gpudata,
B_gpu.indices.gpudata,
A_gpu.gpudata,
ldb,
beta,
C_gpu.gpudata,
ldc,
)
return C_gpu
def csrmm2(A_gpu, B_gpu, C_gpu, transA=False, transB=False, alpha=1.0, beta=0.0):
""" Calculates C += alpha * A*B + beta*C.
Where A is sparse and both A and B can be transposed.
"""
if transA:
ta = cusparse.CUSPARSE_OPERATION_TRANSPOSE
n, l = A_gpu.shape[1], A_gpu.shape[0]
else:
ta = cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
n, l = A_gpu.shape
if (B_gpu.flags.c_contiguous and transB) or (B_gpu.flags.f_contiguous and not transB):
tb = cusparse.CUSPARSE_OPERATION_NON_TRANSPOSE
else:
tb = cusparse.CUSPARSE_OPERATION_TRANSPOSE
k, m = (B_gpu.shape[1], B_gpu.shape[0]) if transB else B_gpu.shape
assert (l == k) and (n, m) == C_gpu.shape
ldb = B_gpu.shape[1] if B_gpu.flags.c_contiguous else B_gpu.shape[0]
ldc = C_gpu.shape[0]
# if C-major, save result into a temp array and transpose afterwards
if C_gpu.flags.c_contiguous:
out = __cuda_get_temp_matrix(C_gpu.shape, C_gpu.dtype)
if beta != 0.0:
memcpy_dtod(out.gpudata, C_gpu.gpudata, C_gpu.nbytes)
else:
out = C_gpu
cusparse.cusparseScsrmm2(
cusparse_handle,
ta,
tb,
n,
m,
k,
A_gpu.nnz,
alpha,
A_gpu.descr,
A_gpu.data.gpudata,
A_gpu.indptr.gpudata,
A_gpu.indices.gpudata,
B_gpu.gpudata,
ldb,
beta,
out.gpudata,
ldc,
)
if C_gpu.flags.c_contiguous:
cublas.cublasSgeam(
cublas_handle,
1,
1,
m,
n,
1.0,
out.gpudata,
C_gpu.shape[0],
0.0,
0,
C_gpu.shape[0],
C_gpu.gpudata,
C_gpu.shape[1],
)
return C_gpu