def test_deduplication_works():
# toy sample (the last two samples are outliers)
X = [[-2, -1], [-1, -1], [-1, -2], [1, 1], [1, 2], [2, 1], [6, 3], [4, -7]]
y = [0] * 6 + [1] * 2
X_test = [[-2, -1], [-1, -1], [-1, -2], [1, 1], [1, 2], [2, 1], [10, 5],
[5, -7]]
# Test LOF
clf = SkopeRules(random_state=rng, max_samples=1., max_depth_duplication=3)
clf.fit(X, y)
decision_func = clf.decision_function(X_test)
rules_vote = clf.rules_vote(X_test)
score_top_rules = clf.score_top_rules(X_test)
pred = clf.predict(X_test)
pred_score_top_rules = clf.predict_top_rules(X_test, 1)
def test_skope_rules_works():
# toy sample (the last two samples are outliers)
X = [[-2, -1], [-1, -1], [-1, -2], [1, 1], [1, 2], [2, 1], [6, 3], [4, -7]]
y = [0] * 6 + [1] * 2
X_test = [[-2, -1], [-1, -1], [-1, -2], [1, 1], [1, 2], [2, 1], [10, 5],
[5, -7]]
# Test LOF
clf = SkopeRules(random_state=rng, max_samples=1.)
clf.fit(X, y)
decision_func = clf.decision_function(X_test)
rules_vote = clf.rules_vote(X_test)
separate_rules_score = clf.separate_rules_score(X_test)
pred = clf.predict(X_test)
# assert detect outliers:
assert_greater(np.min(decision_func[-2:]), np.max(decision_func[:-2]))
assert_greater(np.min(rules_vote[-2:]), np.max(rules_vote[:-2]))
assert_greater(np.min(separate_rules_score[-2:]),
np.max(separate_rules_score[:-2]))
assert_array_equal(pred, 6 * [0] + 2 * [1])
def OverSampleKfold(data, k=10):
data_np = data.to_numpy()
X = data_np[:, 0:18]
y = data_np[:, 18]
sm = SMOTE()
kf = KFold(n_splits=k, shuffle=True)
accuracy = {'neigh': [], 'tree': [], 'naive': [], 'rule': []}
recall = {'neigh': [], 'tree': [], 'naive': [], 'rule': []}
auc = {'neigh': [], 'tree': [], 'naive': [], 'rule': []}
for train_index, test_index in kf.split(X):
X_train, X_test = X[train_index], X[test_index]
y_train, y_test = y[train_index], y[test_index] #test set
print('num of pos:', np.sum(y_train), ', num of neg:',
y_train.size - np.sum(y_train))
X_over, y_over = sm.fit_resample(X_train,
y_train) #oversampled train set
print('oversample:', X_over.shape, y_over.shape)
print('---------------------------------------')
neigh = KNeighborsClassifier()
neigh.fit(X_over, y_over)
neigh_y_pred = neigh.predict(X_test)
neigh_y_score = neigh.predict_proba(X_test)[:, 1]
#nei scorer
recall['neigh'].append(
recall_score(y_test, neigh_y_pred, labels=None, pos_label=1))
accuracy['neigh'].append(
accuracy_score(y_test,
neigh_y_pred,
normalize=True,
sample_weight=None))
auc['neigh'].append(roc_auc_score(y_test, neigh_y_score))
print('---------')
tree = DecisionTreeClassifier()
tree.fit(X_over, y_over)
tree_y_pred = tree.predict(X_test)
tree_y_score = tree.predict_proba(X_test)[:, 1]
#nei scorer
recall['tree'].append(
recall_score(y_test, tree_y_pred, labels=None, pos_label=1))
accuracy['tree'].append(
accuracy_score(y_test,
tree_y_pred,
normalize=True,
sample_weight=None))
auc['tree'].append(roc_auc_score(y_test, tree_y_score))
print('---------')
naive = GaussianNB()
naive.fit(X_over, y_over)
naive_y_pred = naive.predict(X_test)
naive_y_score = naive.predict_proba(X_test)[:, 1]
#nei scorer
recall['naive'].append(
recall_score(y_test, naive_y_pred, labels=None, pos_label=1))
accuracy['naive'].append(
accuracy_score(y_test,
naive_y_pred,
normalize=True,
sample_weight=None))
auc['naive'].append(roc_auc_score(y_test, naive_y_score))
print('---------')
rule = SkopeRules(feature_names=data.columns.to_list()[0:18])
rule.fit(X_over, y_over)
rules_y_pred = rule.predict(X_test)
rule_y_score = rule.rules_vote(X_test)
recall['rule'].append(
recall_score(y_test, rules_y_pred, labels=None, pos_label=1))
accuracy['rule'].append(
accuracy_score(y_test,
rules_y_pred,
normalize=True,
sample_weight=None))
auc['rule'].append(roc_auc_score(y_test, rule_y_score))
return accuracy, recall, auc
def BalanceSampleKfold(data, k=10):
data_np = data.to_numpy()
X = data_np[:, 0:18]
y = data_np[:, 18]
rus_balance = RandomUnderSampler(
sampling_strategy=0.20) #truncate neg to 5*#pos
sm_balance = SMOTE() #then oversample pos
kf = KFold(n_splits=10, shuffle=True)
accuracy = {'neigh': [], 'tree': [], 'naive': [], 'rule': []}
recall = {'neigh': [], 'tree': [], 'naive': [], 'rule': []}
auc = {'neigh': [], 'tree': [], 'naive': [], 'rule': []}
for train_index, test_index in kf.split(X):
X_train, X_test = X[train_index], X[test_index]
y_train, y_test = y[train_index], y[test_index] #test set
print('num of pos:', np.sum(y_train), ', num of neg:',
y_train.size - np.sum(y_train))
X_bal, y_bal = rus_balance.fit_resample(X_train,
y_train) #BALANCED SAMPLE
print('1.under:')
print('num of pos:', np.sum(y_bal), ', num of neg:',
y_bal.size - np.sum(y_bal))
X_bal, y_bal = sm_balance.fit_resample(X_bal, y_bal)
print('2.over:')
print('num of pos:', np.sum(y_bal), ', num of neg:',
y_bal.size - np.sum(y_bal))
print('---------------------------------------')
neigh = KNeighborsClassifier()
neigh.fit(X_bal, y_bal)
neigh_y_pred = neigh.predict(X_test)
neigh_y_score = neigh.predict_proba(X_test)[:, 1]
#nei scorer
recall['neigh'].append(
recall_score(y_test, neigh_y_pred, labels=None, pos_label=1))
accuracy['neigh'].append(
accuracy_score(y_test,
neigh_y_pred,
normalize=True,
sample_weight=None))
auc['neigh'].append(roc_auc_score(y_test, neigh_y_score))
print('---------')
tree = DecisionTreeClassifier()
tree.fit(X_bal, y_bal)
tree_y_pred = tree.predict(X_test)
tree_y_score = tree.predict_proba(X_test)[:, 1]
#nei scorer
recall['tree'].append(
recall_score(y_test, tree_y_pred, labels=None, pos_label=1))
accuracy['tree'].append(
accuracy_score(y_test,
tree_y_pred,
normalize=True,
sample_weight=None))
auc['tree'].append(roc_auc_score(y_test, tree_y_score))
print('---------')
naive = GaussianNB()
naive.fit(X_bal, y_bal)
naive_y_pred = naive.predict(X_test)
naive_y_score = naive.predict_proba(X_test)[:, 1]
#nei scorer
recall['naive'].append(
recall_score(y_test, naive_y_pred, labels=None, pos_label=1))
accuracy['naive'].append(
accuracy_score(y_test,
naive_y_pred,
normalize=True,
sample_weight=None))
auc['naive'].append(roc_auc_score(y_test, naive_y_score))
print('---------')
rule = SkopeRules(feature_names=data.columns.to_list()[0:18])
rule.fit(X_bal, y_bal)
rules_y_pred = rule.predict(X_test)
rule_y_score = rule.rules_vote(X_test)
recall['rule'].append(
recall_score(y_test, rules_y_pred, labels=None, pos_label=1))
accuracy['rule'].append(
accuracy_score(y_test,
rules_y_pred,
normalize=True,
sample_weight=None))
auc['rule'].append(roc_auc_score(y_test, rule_y_score))
return accuracy, recall, auc