def test_result(self):
workflow = WorkflowTest.wf_examples.special_command()
self.wf_id = WorkflowTest.wf_ctrl.submit_workflow(workflow=workflow,
name="unit test command check")
if self.path_management == WorkflowTest.FILE_TRANSFER:
Helper.transfer_input_files(self.wf_id, WorkflowTest.wf_ctrl)
Helper.wait_workflow(self.wf_id, WorkflowTest.wf_ctrl)
status = self.wf_ctrl.workflow_status(self.wf_id)
self.assert_(status == constants.WORKFLOW_DONE)
self.assert_(len(Helper.list_failed_jobs(self.wf_id,
WorkflowTest.wf_ctrl)) == 0)
self.assert_(len(Helper.list_failed_jobs(self.wf_id,
WorkflowTest.wf_ctrl,
include_aborted_jobs=True)) == 0)
def test_result(self):
workflow = WorkflowTest.wf_examples.multiple_simple_example()
self.wf_id = WorkflowTest.wf_ctrl.submit_workflow(workflow=workflow,
name="unit test multiple")
if self.path_management == WorkflowTest.FILE_TRANSFER:
Helper.transfer_input_files(self.wf_id, WorkflowTest.wf_ctrl)
Helper.wait_workflow(self.wf_id, WorkflowTest.wf_ctrl)
if self.path_management == WorkflowTest.FILE_TRANSFER:
Helper.transfer_output_files(self.wf_id, WorkflowTest.wf_ctrl)
status = self.wf_ctrl.workflow_status(self.wf_id)
fail_jobs=Helper.list_failed_jobs(self.wf_id, WorkflowTest.wf_ctrl)
# num_list_fail_jobs=len(fail_jobs)
# print "num_list_fail_jobs=" + repr(num_list_fail_jobs)
# for fail_job_id in fail_jobs:
# print "fail job id :" +repr(fail_job_id)+"\n"
(jobs_info,
transfers_info,
workflow_status,
workflow_queue) = WorkflowTest.wf_ctrl.workflow_elements_status(self.wf_id)
# print "len(jobs_info)=" + repr(len(jobs_info)) + "\n"
# TODO: check the stdout and stderrr
for (job_id, tmp_status, queue, exit_info, dates) in jobs_info:
# print "job_id=" +repr(job_id)+"\n"
job_list=self.wf_ctrl.jobs([job_id])
#print 'len(job_list)='+repr(len(job_list))+"\n"
job_name, job_command, job_submission_date=job_list[job_id]
# print "name=" +repr(job_name)+"\n"
# print "command=" +repr(job_command)+"\n"
# print "submission=" +repr(job_submission_date)+"\n"
# print "tmp_status=" +repr(tmp_status)+"\n"
# print "exit_info=" +repr(exit_info)+"\n"
# print "dates=" +repr(dates)+"\n"
##To check job standard out
if repr(job_name)=="'job1'" and exit_info[0]==constants.FINISHED_REGULARLY:
#print "Verify "+repr(job_name)+" \n"
job_stdout_file="/tmp/job_soma_out_log_"+repr(job_id)
job_stderr_file="/tmp/job_soma_outerr_log_"+repr(job_id)
self.wf_ctrl.retrieve_job_stdouterr(job_id,job_stdout_file,job_stderr_file)
isSame, msg = identicalFiles(job_stdout_file,WorkflowTest.wf_examples.lo_stdout1)
self.failUnless(isSame == True)
if self.path_management==WorkflowTest.LOCAL_PATH:
isSame, msg = identicalFiles(WorkflowTest.wf_examples.lo_out_model_file11, WorkflowTest.wf_examples.lo_file11)
self.failUnless(isSame == True)
isSame, msg = identicalFiles(WorkflowTest.wf_examples.lo_out_model_file12, WorkflowTest.wf_examples.lo_file12)
self.failUnless(isSame == True)
isSame, msg = identicalFiles(job_stderr_file,WorkflowTest.wf_examples.lo_stderr1)
self.failUnless(isSame == True)
if self.path_management==WorkflowTest.FILE_TRANSFER:
isSame, msg = identicalFiles(WorkflowTest.wf_examples.lo_out_model_file11, WorkflowTest.wf_examples.tr_file11.client_path)
self.failUnless(isSame == True)
isSame, msg = identicalFiles(WorkflowTest.wf_examples.lo_out_model_file12, WorkflowTest.wf_examples.tr_file12.client_path)
self.failUnless(isSame == True)
#For unknown reason, it raise some errors
#http://stackoverflow.com/questions/10496758/unexpected-end-of-file-and-error-importing-function-definition-error-running
#isSame, msg = identicalFiles(job_stderr_file,WorkflowTest.wf_examples.lo_stderr1)
#self.failUnless(isSame == True)
if repr(job_name)=="'job1 with exception'" and exit_info[0]==constants.FINISHED_REGULARLY:
#print "Verify "+repr(job_name)+" \n"
job_stdout_file="/tmp/job_soma_out_log_"+repr(job_id)
job_stderr_file="/tmp/job_soma_outerr_log_"+repr(job_id)
self.wf_ctrl.retrieve_job_stdouterr(job_id,job_stdout_file,job_stderr_file)
isSame, msg = identicalFiles(job_stdout_file,WorkflowTest.wf_examples.lo_stdout1_exception_model)
self.failUnless(isSame == True)
if repr(job_name)=="'job2'" and exit_info[0]==constants.FINISHED_REGULARLY:
#print "Verify "+repr(job_name)+" \n"
job_stdout_file="/tmp/job_soma_out_log_"+repr(job_id)
job_stderr_file="/tmp/job_soma_outerr_log_"+repr(job_id)
self.wf_ctrl.retrieve_job_stdouterr(job_id,job_stdout_file,job_stderr_file)
if self.path_management==WorkflowTest.FILE_TRANSFER:
isSame, msg = identicalFiles(WorkflowTest.wf_examples.tr_file2.client_path, WorkflowTest.wf_examples.lo_out_model_file2)
if self.path_management==WorkflowTest.LOCAL_PATH:
isSame, msg = identicalFiles(WorkflowTest.wf_examples.lo_file2, WorkflowTest.wf_examples.lo_out_model_file2)
self.failUnless(isSame == True)
isSame, msg = identicalFiles(job_stderr_file,WorkflowTest.wf_examples.lo_stderr2)
self.failUnless(isSame == True)
isSame, msg = identicalFiles(job_stdout_file,WorkflowTest.wf_examples.lo_stdout2)
self.failUnless(isSame == True)
if repr(job_name)=="'job3'" and exit_info[0]==constants.FINISHED_REGULARLY:
#print "Verify "+repr(job_name)+" \n"
job_stdout_file="/tmp/job_soma_out_log_"+repr(job_id)
job_stderr_file="/tmp/job_soma_outerr_log_"+repr(job_id)
self.wf_ctrl.retrieve_job_stdouterr(job_id,job_stdout_file,job_stderr_file)
isSame, msg = identicalFiles(job_stdout_file,WorkflowTest.wf_examples.lo_stdout3)
self.failUnless(isSame == True)
if self.path_management==WorkflowTest.LOCAL_PATH:
isSame, msg = identicalFiles(job_stderr_file,WorkflowTest.wf_examples.lo_stderr3)
self.failUnless(isSame == True)
isSame, msg = identicalFiles(WorkflowTest.wf_examples.lo_file3, WorkflowTest.wf_examples.lo_out_model_file3)
self.failUnless(isSame == True)
if self.path_management==WorkflowTest.FILE_TRANSFER:
isSame, msg = identicalFiles(WorkflowTest.wf_examples.tr_file3.client_path, WorkflowTest.wf_examples.lo_out_model_file3)
self.failUnless(isSame == True)
if repr(job_name)=="'job4'" and exit_info[0]==constants.FINISHED_REGULARLY:
#print "Verify "+repr(job_name)+" \n"
job_stdout_file="/tmp/job_soma_out_log_"+repr(job_id)
job_stderr_file="/tmp/job_soma_outerr_log_"+repr(job_id)
self.wf_ctrl.retrieve_job_stdouterr(job_id,job_stdout_file,job_stderr_file)
isSame, msg = identicalFiles(job_stdout_file,WorkflowTest.wf_examples.lo_stdout4)
self.failUnless(isSame == True)
if self.path_management==WorkflowTest.LOCAL_PATH:
isSame, msg = identicalFiles(WorkflowTest.wf_examples.lo_file4, WorkflowTest.wf_examples.lo_out_model_file4)
self.failUnless(isSame == True)
isSame, msg = identicalFiles(job_stderr_file,WorkflowTest.wf_examples.lo_stderr4)
self.failUnless(isSame == True)
if self.path_management==WorkflowTest.FILE_TRANSFER:
isSame, msg = identicalFiles(WorkflowTest.wf_examples.tr_file4.client_path, WorkflowTest.wf_examples.lo_out_model_file4)
self.failUnless(isSame == True)
if repr(job_name)=="'job3 with exception'" and exit_info[0]==constants.FINISHED_REGULARLY:
#print "Verify "+repr(job_name)+" \n"
job_stdout_file="/tmp/job_soma_out_log_"+repr(job_id)
job_stderr_file="/tmp/job_soma_outerr_log_"+repr(job_id)
self.wf_ctrl.retrieve_job_stdouterr(job_id,job_stdout_file,job_stderr_file)
isSame, msg = identicalFiles(job_stdout_file,WorkflowTest.wf_examples.lo_stdout1_exception_model)
self.failUnless(isSame == True)
self.assert_(status == constants.WORKFLOW_DONE)
self.assert_(len(Helper.list_failed_jobs(self.wf_id,
WorkflowTest.wf_ctrl)) == 2)
self.assert_(len(Helper.list_failed_jobs(self.wf_id,
WorkflowTest.wf_ctrl,
include_aborted_jobs=True)) == 6)
