def test_basic_resource_from_dict(self):
"""Test basic to dict deserialization method
Returns:
None
"""
setup_data = get_image_dict()
resource1 = BossResourceBasic(setup_data)
resource2 = BossResourceBasic()
resource2.from_dict(resource1.to_dict())
# Check Collection
col = resource2.get_collection()
assert col.name == setup_data['collection']['name']
assert col.description == setup_data['collection']['description']
# Check coord frame
coord = resource2.get_coord_frame()
assert coord.name == setup_data['coord_frame']['name']
assert coord.description == setup_data['coord_frame']['description']
assert coord.x_start == setup_data['coord_frame']['x_start']
assert coord.x_stop == setup_data['coord_frame']['x_stop']
assert coord.y_start == setup_data['coord_frame']['y_start']
assert coord.y_stop == setup_data['coord_frame']['y_stop']
assert coord.z_start == setup_data['coord_frame']['z_start']
assert coord.z_stop == setup_data['coord_frame']['z_stop']
assert coord.x_voxel_size == setup_data['coord_frame']['x_voxel_size']
assert coord.y_voxel_size == setup_data['coord_frame']['y_voxel_size']
assert coord.z_voxel_size == setup_data['coord_frame']['z_voxel_size']
assert coord.voxel_unit == setup_data['coord_frame']['voxel_unit']
# Check exp
exp = resource2.get_experiment()
assert exp.name == setup_data['experiment']['name']
assert exp.description == setup_data['experiment']['description']
assert exp.num_hierarchy_levels == setup_data['experiment']['num_hierarchy_levels']
assert exp.hierarchy_method == setup_data['experiment']['hierarchy_method']
assert exp.num_time_samples == setup_data['experiment']['num_time_samples']
assert exp.time_step == setup_data['experiment']['time_step']
assert exp.time_step_unit == setup_data['experiment']['time_step_unit']
# Check channel
channel = resource2.get_channel()
assert channel.is_image() is True
assert channel.name == setup_data['channel']['name']
assert channel.description == setup_data['channel']['description']
assert channel.datatype == setup_data['channel']['datatype']
assert channel.base_resolution == setup_data['channel']['base_resolution']
assert channel.sources == setup_data['channel']['sources']
assert channel.related == setup_data['channel']['related']
assert channel.default_time_sample == setup_data['channel']['default_time_sample']
# check keys
assert resource2.get_lookup_key() == setup_data['lookup_key']
assert resource2.get_boss_key() == setup_data['boss_key']
def test_basic_resource_from_dict(self):
"""Test basic to dict deserialization method
Returns:
None
"""
setup_data = get_image_dict()
resource1 = BossResourceBasic(setup_data)
resource2 = BossResourceBasic()
resource2.from_dict(resource1.to_dict())
# Check Collection
col = resource2.get_collection()
assert col.name == setup_data['collection']['name']
assert col.description == setup_data['collection']['description']
# Check coord frame
coord = resource2.get_coord_frame()
assert coord.name == setup_data['coord_frame']['name']
assert coord.description == setup_data['coord_frame']['description']
assert coord.x_start == setup_data['coord_frame']['x_start']
assert coord.x_stop == setup_data['coord_frame']['x_stop']
assert coord.y_start == setup_data['coord_frame']['y_start']
assert coord.y_stop == setup_data['coord_frame']['y_stop']
assert coord.z_start == setup_data['coord_frame']['z_start']
assert coord.z_stop == setup_data['coord_frame']['z_stop']
assert coord.x_voxel_size == setup_data['coord_frame']['x_voxel_size']
assert coord.y_voxel_size == setup_data['coord_frame']['y_voxel_size']
assert coord.z_voxel_size == setup_data['coord_frame']['z_voxel_size']
assert coord.voxel_unit == setup_data['coord_frame']['voxel_unit']
# Check exp
exp = resource2.get_experiment()
assert exp.name == setup_data['experiment']['name']
assert exp.description == setup_data['experiment']['description']
assert exp.num_hierarchy_levels == setup_data['experiment']['num_hierarchy_levels']
assert exp.hierarchy_method == setup_data['experiment']['hierarchy_method']
assert exp.num_time_samples == setup_data['experiment']['num_time_samples']
assert exp.time_step == setup_data['experiment']['time_step']
assert exp.time_step_unit == setup_data['experiment']['time_step_unit']
# Check channel
channel = resource2.get_channel()
assert channel.is_image() is True
assert channel.name == setup_data['channel']['name']
assert channel.description == setup_data['channel']['description']
assert channel.datatype == setup_data['channel']['datatype']
assert channel.base_resolution == setup_data['channel']['base_resolution']
assert channel.sources == setup_data['channel']['sources']
assert channel.related == setup_data['channel']['related']
assert channel.default_time_sample == setup_data['channel']['default_time_sample']
# check keys
assert resource2.get_lookup_key() == setup_data['lookup_key']
assert resource2.get_boss_key() == setup_data['boss_key']
def test_basic_resource_annotation_no_time(self):
"""Test basic get layer interface
Returns:
None
"""
setup_data = get_anno_dict()
resource = BossResourceBasic(setup_data)
channel = resource.get_channel()
assert channel.is_image() is False
assert channel.name == setup_data['channel']['name']
assert channel.description == setup_data['channel']['description']
assert channel.datatype == setup_data['channel']['datatype']
assert channel.base_resolution == setup_data['channel']['base_resolution']
assert channel.sources == setup_data['channel']['sources']
assert channel.related == setup_data['channel']['related']
assert channel.default_time_sample == setup_data['channel']['default_time_sample']
def test_basic_resource_annotation_no_time(self):
"""Test basic get layer interface
Returns:
None
"""
setup_data = get_anno_dict()
resource = BossResourceBasic(setup_data)
channel = resource.get_channel()
assert channel.is_image() is False
assert channel.name == setup_data['channel']['name']
assert channel.description == setup_data['channel']['description']
assert channel.datatype == setup_data['channel']['datatype']
assert channel.base_resolution == setup_data['channel']['base_resolution']
assert channel.sources == setup_data['channel']['sources']
assert channel.related == setup_data['channel']['related']
assert channel.default_time_sample == setup_data['channel']['default_time_sample']
def test_basic_resource_channel_with_related(self):
"""Test basic get channel interface
Returns:
None
"""
setup_data = get_image_dict()
setup_data['channel']['related'] = ["ch_2", "ch_3"]
resource = BossResourceBasic(setup_data)
channel = resource.get_channel()
assert channel.is_image() is True
assert channel.name == setup_data['channel']['name']
assert channel.description == setup_data['channel']['description']
assert channel.datatype == setup_data['channel']['datatype']
assert channel.base_resolution == setup_data['channel']['base_resolution']
assert channel.sources == setup_data['channel']['sources']
assert channel.related == setup_data['channel']['related']
assert channel.default_time_sample == setup_data['channel']['default_time_sample']
def test_basic_resource_channel_with_related(self):
"""Test basic get channel interface
Returns:
None
"""
setup_data = get_image_dict()
setup_data['channel']['related'] = ["ch_2", "ch_3"]
resource = BossResourceBasic(setup_data)
channel = resource.get_channel()
assert channel.is_image() is True
assert channel.name == setup_data['channel']['name']
assert channel.description == setup_data['channel']['description']
assert channel.datatype == setup_data['channel']['datatype']
assert channel.base_resolution == setup_data['channel']['base_resolution']
assert channel.sources == setup_data['channel']['sources']
assert channel.related == setup_data['channel']['related']
assert channel.default_time_sample == setup_data['channel']['default_time_sample']
def test_basic_resource_channel_cloudvolume_uint16(self):
"""Test basic get channel interface
Returns:
None
"""
setup_data = get_image_dict(datatype="uint16", storage_type='cloudvol')
resource = BossResourceBasic(setup_data)
channel = resource.get_channel()
assert channel.is_image() is True
assert channel.is_cloudvolume() is True
assert channel.name == setup_data['channel']['name']
assert channel.description == setup_data['channel']['description']
assert channel.datatype == setup_data['channel']['datatype']
assert channel.base_resolution == setup_data['channel']['base_resolution']
assert channel.sources == setup_data['channel']['sources']
assert channel.related == setup_data['channel']['related']
assert channel.default_time_sample == setup_data['channel']['default_time_sample']
assert channel.downsample_status == setup_data['channel']['downsample_status']
assert channel.storage_type == setup_data['channel']['storage_type']
assert channel.bucket == setup_data['channel']['bucket']
assert channel.cv_path == setup_data['channel']['cv_path']
