img_src = r"D:\work\ms.monina\wp5\kalmthoutse_heide\2007-07-02_ahs\mos\2007-07-02_ahs_kalmthoutse_heide_mosaic.img"
loc_src = r"D:\work\ms.monina\wp5\kalmthoutse_heide\field\kalmthoutse_heide_releve_plots.shp"
img_bad_src = r"D:\work\ms.monina\wp5\kalmthoutse_heide\2007-07-02_ahs\_info\2007-07-02_ahs_bad_bands.txt"
cov_src = r"D:\work\ms.monina\wp5\kalmthoutse_heide\2007-07-02_ahs\_info\2007-07-02_ahs_mosaic_plot_coverage.txt"
#factor = 1 / 10000.
neighborhood = 6
#neighborhood_type = 'circle'
if not 'loc_id_field' in locals():
loc_id_field = 'plot_id'
if not 'img_bad_src' in locals():
img_bad_src = ''
if not 'cov_src' in locals():
cov_src = ''
if not 'factor' in locals():
factor = 1
if not 'neighborhood' in locals():
neighborhood = 1
if not 'neighborhood_type' in locals():
neighborhood_type = 'square'
if not 'additional_attributes' in locals():
additional_attributes = list()
se = SpectraExtractor(img_src, loc_src, tgt_dir)
se.extract(loc_id_field, img_bad_src, cov_src, neighborhood, factor,
additional_attributes, neighborhood_type)
se.dump_spectra(include_bad_bands=False)
#se.export_spectra()
loc_src = r"z:\fabi\wh_sample_pts.shp"
#loc_src = r"D:\work\ms.monina\wp5\wahner_heide\field\shp\wh_195plots_doku_2009.shp"
loc_id_field = 'id'
additional_attributes = ['type']
#img_bad_src = r"D:\work\ms.monina\wp5\wahner_heide\2009-08-06_hymap\_info\2009-08-06_hymap_bad_bands.txt"
#img_bad_src = r"D:\work\ms.monina\wp5\wahner_heide\2011-09-14_apex\_info\2011-09-14_apex_bad_bands.txt"
#cov_src = r"D:\work\ms.monina\wp5\wahner_heide\2009-08-06_hymap\_info\2009-08-06_hymap_plot_coverage.txt"
#factor = 1 / 10000.
#neighborhood = 2
if not 'loc_id_field' in locals():
loc_id_field = 'plot_id'
if not 'img_bad_src' in locals():
img_bad_src = ''
if not 'cov_src' in locals():
cov_src = ''
if not 'factor' in locals():
factor = 1
if not 'neighborhood' in locals():
neighborhood = 1
if not 'additional_attributes' in locals():
additional_attributes = list()
se = SpectraExtractor(img_src, loc_src, tgt_dir)
se.extract(loc_id_field, img_bad_src, cov_src, neighborhood, factor, additional_attributes)
se.dump_spectra(include_bad_bands = True)
se.export_spectra()
loc_src = r"Z:/fabi/wh_sample_pts.shp"
#loc_src = r"D:\work\ms.monina\wp5\wahner_heide\field\shp\wh_195plots_doku_2009.shp"
loc_id_field = 'id'
additional_attributes = ['type']
img_bad_src = r"D:\work\ms.monina\wp5\wahner_heide\2009-08-06_hymap\_info\2009-08-06_hymap_bad_bands.txt"
#cov_src = r"D:\work\ms.monina\wp5\wahner_heide\2009-08-06_hymap\_info\2009-08-06_hymap_plot_coverage.txt"
factor = 1 / 10000.
#neighborhood = 2
if not 'loc_id_field' in locals():
loc_id_field = 'plot_id'
if not 'img_bad_src' in locals():
img_bad_src = ''
if not 'cov_src' in locals():
cov_src = ''
if not 'factor' in locals():
factor = 1
if not 'neighborhood' in locals():
neighborhood = 1
if not 'additional_attributes' in locals():
additional_attributes = list()
se = SpectraExtractor(img_src, loc_src, tgt_dir)
se.extract(loc_id_field, img_bad_src, cov_src, neighborhood, factor,
additional_attributes)
se.dump_spectra(include_bad_bands=True)
se.export_spectra()
img_src = r"D:\work\ms.monina\wp5\doeberitzer_heide\2008-08-07_hymap\mos\2008-08-07_hymap_doeberitzer_heide_mosaic_good_bands_only.img"
loc_src = r"D:\work\ms.monina\wp5\doeberitzer_heide\field\doeberitzer_heide_releve_plots.shp"
# img_bad_src = r"D:\work\ms.monina\wp5\doeberitzer_heide\2008-08-07_hymap\_info\2008-08-07_hymap_bad_bands.txt"
cov_src = r"D:\work\ms.monina\wp5\doeberitzer_heide\2008-08-07_hymap\_info\2008-08-07_hymap_strip_plot_id_linkage_duplicates_.txt"
# factor = 1 / 10000.
neighborhood = 2
# neighborhood_type = 'circle'
if not "loc_id_field" in locals():
loc_id_field = "plot_id"
if not "img_bad_src" in locals():
img_bad_src = ""
if not "cov_src" in locals():
cov_src = ""
if not "factor" in locals():
factor = 1
if not "neighborhood" in locals():
neighborhood = 1
if not "neighborhood_type" in locals():
neighborhood_type = "square"
if not "additional_attributes" in locals():
additional_attributes = list()
se = SpectraExtractor(img_src, loc_src, tgt_dir)
se.extract(loc_id_field, img_bad_src, cov_src, neighborhood, factor, additional_attributes, neighborhood_type)
se.dump_spectra(include_bad_bands=False)
# se.export_spectra()