def test_scores(self):
""" Test the scores function. """
obio = OboIO()
terms = obio.get_graph(GOFILE)
gdc = GoDistanceCounter(terms)
self.assertEqual((5, 5), gdc.scores('11', '0'))
self.assertEqual((4, 4), gdc.scores('11', '1'))
self.assertEqual((6, 0), gdc.scores('9', '5'))
self.assertEqual((5, 1), gdc.scores('7', '5'))
self.assertEqual((6, 0), gdc.scores('8', '5'))
def test_scores(self):
""" Test the scores function. """
obio = OboIO()
terms = obio.get_graph(GOFILE)
gdc = GoDistanceCounter(terms)
self.assertEqual((5, 5), gdc.scores('11', '0'))
self.assertEqual((4, 4), gdc.scores('11', '1'))
self.assertEqual((6, 0), gdc.scores('9', '5'))
self.assertEqual((5, 1), gdc.scores('7', '5'))
self.assertEqual((6, 0), gdc.scores('8', '5'))
def test_alt_id(self):
""" Test that a GO term with an alt_id is added to the list. """
obio = OboIO()
terms = obio.get_graph(GOFILE)
gdc = GoDistanceCounter(terms)
term = terms['12']
self.assertEqual('7', term['id'])
term = terms['13']
self.assertEqual('8', term['id'])
gdc = GoDistanceCounter(terms)
self.assertEqual((5, 1), gdc.scores('12', '5'))
self.assertEqual((6, 0), gdc.scores('13', '5'))
def test_alt_id(self):
""" Test that a GO term with an alt_id is added to the list. """
obio = OboIO()
terms = obio.get_graph(GOFILE)
gdc = GoDistanceCounter(terms)
term = terms['12']
self.assertEqual('7', term['id'])
term = terms['13']
self.assertEqual('8', term['id'])
gdc = GoDistanceCounter(terms)
self.assertEqual((5, 1), gdc.scores('12', '5'))
self.assertEqual((6, 0), gdc.scores('13', '5'))