def testOddsRatio(self): """Verify computation of Odds ratio effect size filter""" from stamp.plugins.samples.effectSizeFilters.OddsRatio import OddsRatio oddsRatio = OddsRatio(preferences) # Ground truth calculated by hand value = oddsRatio.run(table1[0], table1[1], table1[2], table1[3]) self.assertAlmostEqual(value, 2.0) value = oddsRatio.run(table2[0], table2[1], table2[2], table2[3]) self.assertAlmostEqual(value, 1.60483870968)
def testOddsRatio(self): """Verify computation of Odds ratio CI method""" from stamp.plugins.samples.confidenceIntervalMethods.OddsRatio import OddsRatio oddsRatio = OddsRatio(preferences) # Ground truth calculated by hand lowerCI, upperCI, effectSize, _ = oddsRatio.run(table1[0], table1[1], table1[2], table1[3], 0.95) self.assertAlmostEqual(lowerCI, 0.676046021596) self.assertAlmostEqual(upperCI, 5.91675695474) self.assertAlmostEqual(effectSize, 2.0) lowerCI, upperCI, effectSize, _ = oddsRatio.run(table2[0], table2[1], table2[2], table2[3], 0.95) self.assertAlmostEqual(lowerCI, 1.53926774059) self.assertAlmostEqual(upperCI, 1.6732029238) self.assertAlmostEqual(effectSize, 1.60483870968)
