def translate_and_query(self, hek_results, limit=None,
full_query=False, use_progress_bar=True):
"""
Translates HEK results, makes a VSO query, then returns the results.
Takes the results from a HEK query, translates them, then makes a VSO
query, returning the results in a list organized by their
corresponding HEK query.
Parameters
----------
hek_results: sunpy.net.hek.hek.Response or list of sunpy.-.-.-.Response
The results from a HEK query in the form of a list.
limit: int
An approximate limit to the desired number of VSO results.
full_query: Boolean
A simple flag that determines if the method is being
called from the full_query() method.
use_progress_bar: Boolean
A flag to turn off the progress bar, defaults to "on"
Examples
--------
>>> from sunpy.net import hek, hek2vso
>>> h = hek.HEKClient()
>>> tstart = '2011/08/09 07:23:56'
>>> t_end = '2011/08/09 12:40:29'
>>> t_event = 'FL'
>>> q = h.query(hek.attrs.Time(tstart, tend), hek.attts.EventType(event_type))
>>> h2v = hek2vso.H2VClient()
>>> res = h2v.translate_and_query(q)
"""
if full_query is False:
self.quick_clean()
self.hek_results = hek_results
vso_query = translate_results_to_query(hek_results)
result_size = len(vso_query)
for query in vso_query:
if use_progress_bar:
pbar = TTYProgressBar('Querying VSO webservice', result_size)
temp = self.vso_client.query(*query)
self.vso_results.append(temp)
self.num_of_records += len(temp)
if limit is not None:
if self.num_of_records >= limit:
break
pbar.poke()
if use_progress_bar:
pbar.finish()
return self.vso_results
def translate_and_query(self, hek_results, limit=None, progress=False):
"""
Translates HEK results, makes a VSO query, then returns the results.
Takes the results from a HEK query, translates them, then makes a VSO
query, returning the results in a list organized by their
corresponding HEK query.
Parameters
----------
hek_results: sunpy.net.hek.hek.Response or list of Responses
The results from a HEK query in the form of a list.
limit: int
An approximate limit to the desired number of VSO results.
progress: Boolean
A flag to turn off the progress bar, defaults to "off"
Examples
--------
>>> from sunpy.net import hek, hek2vso
>>> h = hek.HEKClient()
>>> tstart = '2011/08/09 07:23:56'
>>> tend = '2011/08/09 12:40:29'
>>> event_type = 'FL'
>>> q = h.query(hek.attrs.Time(tstart, tend), hek.attts.EventType(event_type))
>>> h2v = hek2vso.H2VClient()
>>> res = h2v.translate_and_query(q)
"""
vso_query = translate_results_to_query(hek_results)
result_size = len(vso_query)
if progress:
sys.stdout.write('\rQuerying VSO webservice')
sys.stdout.flush()
pbar = TTYProgressBar(result_size)
for query in vso_query:
temp = self.vso_client.query(*query)
self.vso_results.append(temp)
self.num_of_records += len(temp)
if limit is not None:
if self.num_of_records >= limit:
break
if progress:
pbar.poke()
if progress:
pbar.finish()
return self.vso_results
def _gaussian_fits(self, line_guess=None, *extra_lines, **kwargs):
"""
Returns an array of fit objects from which parameters can be extracted
corresponding to the line guesses provided.
Parameters
----------
line_guess and extra_lines: 3-tuples of floats
There must be at least one guess, in the format (intensity,
position, stddev). The closer these guesses are to the true values
the better the fit will be. If left to None, each of the individual
spectra will come up with their own guesses. This only works for
cubes with clean, single-line spectra.
recalc=False: boolean
If True, the gaussian fits will be recalculated, even if there's an
existing fit for the given wavelengths already in the memo. This
keyword should be set to True if changing the amplitude or width of
the fit.
**kwargs: dict
Extra keyword arguments are ultimately passed on to the astropy
fitter.
"""
recalc = kwargs.pop('recalc', False)
if line_guess is None:
key = 'auto'
else:
key = tuple([guess[1] for guess in (line_guess, ) + extra_lines])
if recalc or key not in self._memo:
gaussian_array = np.empty(self.spectra.shape, dtype=object)
bar = PB(self.spectra.shape[0] * self.spectra.shape[1])
drawbar = kwargs.pop('progress_bar', False)
for i in range(self.spectra.shape[0]):
for j in range(self.spectra.shape[1]):
fit = self.spectra[i,
j].gaussian_fit(line_guess,
*extra_lines, **kwargs)
gaussian_array[i, j] = fit
if drawbar:
bar.poke()
self._memo[key] = gaussian_array
bar.finish()
return gaussian_array
else:
return self._memo[key]
def _gaussian_fits(self, line_guess=None, *extra_lines, **kwargs):
"""
Returns an array of fit objects from which parameters can be extracted
corresponding to the line guesses provided.
Parameters
----------
line_guess and extra_lines: 3-tuples of floats
There must be at least one guess, in the format (intensity,
position, stddev). The closer these guesses are to the true values
the better the fit will be. If left to None, each of the individual
spectra will come up with their own guesses. This only works for
cubes with clean, single-line spectra.
recalc=False: boolean
If True, the gaussian fits will be recalculated, even if there's an
existing fit for the given wavelengths already in the memo. This
keyword should be set to True if changing the amplitude or width of
the fit.
**kwargs: dict
Extra keyword arguments are ultimately passed on to the astropy
fitter.
"""
recalc = kwargs.pop('recalc', False)
if line_guess is None:
key = 'auto'
else:
key = tuple([guess[1] for guess in (line_guess,) + extra_lines])
if recalc or key not in self._memo:
gaussian_array = np.empty(self.spectra.shape, dtype=object)
bar = PB(self.spectra.shape[0] * self.spectra.shape[1])
drawbar = kwargs.pop('progress_bar', False)
for i in range(self.spectra.shape[0]):
for j in range(self.spectra.shape[1]):
fit = self.spectra[i, j].gaussian_fit(line_guess,
*extra_lines,
**kwargs)
gaussian_array[i, j] = fit
if drawbar:
bar.poke()
self._memo[key] = gaussian_array
bar.finish()
return gaussian_array
else:
return self._memo[key]
def wait(self, timeout=100, progress=False):
""" Wait for result to be complete and return it. """
# Giving wait a timeout somehow circumvents a CPython bug that the
# call gets ininterruptible.
if progress:
with self.lock:
self.progress = ProgressBar(self.total, self.total - self.n)
self.progress.start()
self.progress.draw()
while not self.evt.wait(timeout):
pass
if progress:
self.progress.finish()
return self.map_
def wait(self, timeout=100, progress=False):
""" Wait for result to be complete and return it. """
# Giving wait a timeout somehow circumvents a CPython bug that the
# call gets ininterruptible.
if progress:
with self.lock:
self.progress = ProgressBar(self.total, self.total - self.n)
self.progress.start()
self.progress.draw()
while not self.evt.wait(timeout):
pass
if progress:
self.progress.finish()
return self.map_
def translate_and_query(self, hek_results, limit=None, progress=False):
"""
Translates HEK results, makes a VSO query, then returns the results.
Takes the results from a HEK query, translates them, then makes a VSO
query, returning the results in a list organized by their
corresponding HEK query.
Parameters
----------
hek_results : `sunpy.net.hek.hek.HEKRow` or `sunpy.net.hek.hek.HEKTable`
The results from a HEK query in the form of a list.
limit : int
An approximate limit to the desired number of VSO results.
progress : Boolean
A flag to turn off the progress bar, defaults to "off"
Examples
--------
>>> from sunpy.net import hek, hek2vso
>>> h = hek.HEKClient() # doctest: +REMOTE_DATA
>>> tstart = '2011/08/09 07:23:56'
>>> tend = '2011/08/09 12:40:29'
>>> event_type = 'FL'
>>> q = h.search(hek.attrs.Time(tstart, tend), hek.attrs.EventType(event_type)) # doctest: +REMOTE_DATA
>>> h2v = hek2vso.H2VClient() # doctest: +REMOTE_DATA
>>> res = h2v.translate_and_query(q) # doctest: +REMOTE_DATA
"""
vso_query = translate_results_to_query(hek_results)
result_size = len(vso_query)
if progress:
sys.stdout.write('\rQuerying VSO webservice')
sys.stdout.flush()
pbar = TTYProgressBar(result_size)
for query in vso_query:
temp = self.vso_client.search(*query)
self.vso_results.append(temp)
self.num_of_records += len(temp)
if limit is not None:
if self.num_of_records >= limit:
break
if progress:
pbar.poke()
if progress:
pbar.finish()
return self.vso_results
class Results(object):
""" Returned by VSOClient.get. Use .wait to wait
for completion of download.
"""
def __init__(self, callback, n=0, done=None):
self.callback = callback
self.n = self.total = n
self.map_ = {}
self.done = done
self.evt = threading.Event()
self.errors = []
self.lock = threading.RLock()
self.progress = None
def submit(self, keys, value):
"""
Submit
Parameters
----------
keys : list
names under which to save the value
value : object
value to save
"""
for key in keys:
self.map_[key] = value
self.poke()
def poke(self):
""" Signal completion of one item that was waited for. This can be
because it was submitted, because it lead to an error or for any
other reason. """
with self.lock:
self.n -= 1
if self.progress is not None:
self.progress.poke()
if not self.n:
if self.done is not None:
self.map_ = self.done(self.map_)
self.callback(self.map_)
self.evt.set()
def require(self, keys):
""" Require that keys be submitted before the Results object is
finished (i.e., wait returns). Returns a callback method that can
be used to submit the result by simply calling it with the result.
keys : list
name of keys under which to save the result
"""
with self.lock:
self.n += 1
self.total += 1
return partial(self.submit, keys)
def wait(self, timeout=100, progress=False):
""" Wait for result to be complete and return it. """
# Giving wait a timeout somehow circumvents a CPython bug that the
# call gets ininterruptible.
if progress:
with self.lock:
self.progress = ProgressBar(self.total, self.total - self.n)
self.progress.start()
self.progress.draw()
while not self.evt.wait(timeout):
pass
if progress:
self.progress.finish()
return self.map_
def add_error(self, exception):
""" Signal a required result cannot be submitted because of an
error. """
self.errors.append(exception)
self.poke()
class Results(object):
""" Returned by VSOClient.get. Use .wait to wait
for completion of download.
"""
def __init__(self, callback, n=0, done=None):
self.callback = callback
self.n = self.total = n
self.map_ = {}
self.done = done
self.evt = threading.Event()
self.errors = []
self.lock = threading.RLock()
self.progress = None
def submit(self, keys, value):
"""
Submit
Parameters
----------
keys : list
names under which to save the value
value : object
value to save
"""
for key in keys:
self.map_[key] = value
self.poke()
def poke(self):
""" Signal completion of one item that was waited for. This can be
because it was submitted, because it lead to an error or for any
other reason. """
with self.lock:
self.n -= 1
if self.progress is not None:
self.progress.poke()
if not self.n:
if self.done is not None:
self.map_ = self.done(self.map_)
self.callback(self.map_)
self.evt.set()
def require(self, keys):
""" Require that keys be submitted before the Results object is
finished (i.e., wait returns). Returns a callback method that can
be used to submit the result by simply calling it with the result.
keys : list
name of keys under which to save the result
"""
with self.lock:
self.n += 1
self.total += 1
return partial(self.submit, keys)
def wait(self, timeout=100, progress=False):
""" Wait for result to be complete and return it. """
# Giving wait a timeout somehow circumvents a CPython bug that the
# call gets ininterruptible.
if progress:
with self.lock:
self.progress = ProgressBar(self.total, self.total - self.n)
self.progress.start()
self.progress.draw()
while not self.evt.wait(timeout):
pass
if progress:
self.progress.finish()
return self.map_
def add_error(self, exception):
""" Signal a required result cannot be submitted because of an
error. """
self.errors.append(exception)
self.poke()