def main(argv):
d2l = getlims()
d2t = gettargets()
excerpt = '/Users/berriz/Work/scratch/excerpt.tsv'
header, rows = rt.readtable(excerpt, headerrow=0)
sigclass = co.namedtuple('sigclass', header[1:], rename=True)
flds = set(si.SignatureData._fields)
t2s = dict()
rn.seed(0)
for row in sorted(rows):
drug, vv = row[0], row[1:]
if drug not in d2t:
continue
rangetested = d2l[drug]
signature = tuple(convert_conc_row(vv))
isclinical = rn.random() < ISCLINICAL_CUTOFF
isselective = rn.random() < ISSELECTIVE_CUTOFF
isprimary = rn.random() < ISPRIMARY_CUTOFF
data = si.SignatureData(**(sd.superdict(locals()).subdict(flds)))
for t in d2t[drug]:
t2s.setdefault(t, []).append(data)
for vv in t2s.values():
drugs = set(v.drug for v in vv)
assert len(drugs) == len(vv)
print ' LATEST =',
pp.pprint(t2s)
def main(argv):
d2l = getlims()
d2t = gettargets()
excerpt = '/Users/berriz/Work/scratch/excerpt.tsv'
header, rows = rt.readtable(excerpt, headerrow=0)
sigclass = co.namedtuple('sigclass', header[1:], rename=True)
flds = set(si.SignatureData._fields)
t2s = dict()
rn.seed(0)
for row in sorted(rows):
drug, vv = row[0], row[1:]
if drug not in d2t:
continue
rangetested = d2l[drug]
signature = tuple(convert_conc_row(vv))
isclinical = rn.random() < ISCLINICAL_CUTOFF
isselective = rn.random() < ISSELECTIVE_CUTOFF
isprimary = rn.random() < ISPRIMARY_CUTOFF
data = si.SignatureData(**(sd.superdict(locals()).subdict(flds)))
for t in d2t[drug]:
t2s.setdefault(t, []).append(data)
for vv in t2s.values():
drugs = set(v.drug for v in vv)
assert len(drugs) == len(vv)
print ' LATEST =',
pp.pprint(t2s)
def parseEvent(self, isctx=False):
ev = superdict()
self.io.reset()
for line in self.io:
if line == '\n': break
self.processLine(ev, line)
if not isctx:
rawlength = ev.get('Content_Length')
if rawlength: ev.rawresponse = self.io.read(int(rawlength))
self.io.reset()
self.io.truncate()
return ev
def dispatchEvent(self, ctx, event): ctx.data = superdict(event.copy()) reactor.callLater(0, self.eventHandler, superdict(ctx.copy())) self.ctx = self.rawlen = None
def readRawResponse(self): self.io.reset() chunk = self.io.read(int(self.ctx.Content_Length)) self.io.reset() self.io.truncate() return superdict(rawresponse=chunk)