def try_read(lcw, _save=True):
"""
try read from bridge, if key not there, save default value
:param lcw: string, local codeword
:param _save: boolean, if not in bridge then save
:return: various
"""
global bridge_client, cw
temp_cw, default = get_cw_default(lcw)
tmp_str = bridge_client.get(temp_cw)
if support.is_empty(tmp_str):
tmp = default
if _save:
bridge_client.put(temp_cw, str(tmp))
else:
if type(default) is int:
try:
tmp = int(tmp_str)
except ValueError:
tmp = default
else:
tmp = tmp_str
return tmp
def try_read(lcw, _save=True):
"""
try read from bridge, if key not there, save default value
:param lcw: string, local codeword
:param _save: boolean, if not in bridge then save
:return: various
"""
global bridge_client, cw
temp_cw, default = get_cw_default(lcw)
tmp_str = bridge_client.get(temp_cw)
if support.is_empty(tmp_str):
tmp = default
if _save:
bridge_client.put(temp_cw, str(tmp))
else:
if type(default) is int:
try:
tmp = int(tmp_str)
except ValueError:
tmp = default
else:
tmp = tmp_str
return tmp
def do_import(self):
section_name = 'discus'
line = 'continue'
if is_empty(self.lst_external.curselection()):
i = 0
else:
if self.filename.get() != 'Filename undefined':
if int(self.lst_external.curselection()[0]) == 0:
line = 'import cif, ' + str(self.filename.get())
suite.execute_command(section_name, line)
def discus_help(self, user):
# Remember old states
fourmenu_state = self.b_fourmenu.state()
# Temporarily turn off
turn_off(self.b_strumenu, self.b_fourmenu, self.b_cmd, self.b_macro)
control_label(self, 'help', 'discus', 2)
# Activate for current user type
if user.get() == 0:
turn_on(self.b_strumenu, self.b_macro)
else:
turn_on(self.b_strumenu, self.b_cmd, self.b_macro)
# For all users return menus to previous state if active
if is_empty(fourmenu_state):
turn_on(self.b_fourmenu)
def convert_external(self, eff=None, event=0):
if is_empty(self.lst_external.curselection()):
self.typestring = 'CIF files'
self.typeext = '*.cif *.CIF'
else:
if int(self.lst_external.curselection()[0]) == 0:
self.typestring = 'CIF files'
self.typeext = '*.cif *.CIF'
elif int(self.lst_external.curselection()[0]) == 1:
self.typestring = 'SHELX files'
self.typeext = '*.ins *.res *.INS *.RES'
elif int(self.lst_external.curselection()[0]) == 2:
self.typestring = 'RMCprofile files'
self.typeext = '*.cssr *.CSSR'
elif int(self.lst_external.curselection()[0]) == 3:
self.typestring = 'CMAKER files'
self.typeext = '*.txt *.TXT'
def process_msg(self):
"""
Process message queue
:return: nothing
"""
while len(self.var.msgQ) > 0:
logmsg.update("Message queue: " + str(self.var.msgQ), 'D')
wait_cycle = False
if support.is_yun():
# this is waiting routine to ensure that msg queue is processed by 32u4 part
tmp_br = bridge.get("msg")
if not support.is_empty(tmp_br):
time.sleep(self.setup.timeout)
wait_cycle = True
if not wait_cycle:
to_send = self.var.msgQ.pop()
logmsg.update("Sending message [" + str(to_send) + "]", 'D')
# if we are going to reset, save bridge file
if to_send == "R":
bridge.save(self.setup.bridge_file)
if support.is_yun():
# signal to 32u4 that we have something to process
bridge.put("msg", to_send)
elif support.is_rpi():
if to_send == "H":
# TBI RPI
# uncomment line below for RPi
# action.do(True)
pass
elif to_send == "S":
# TBI RPI
# uncomment line below for RPi
# action.do(False)
pass
elif support.is_win():
# insert windows code here
# print "nt"
logmsg.update("Processing message on Windows: " +
str(to_send))
def process_msg(self):
"""
Process message queue
:return: nothing
"""
while len(self.var.msgQ) > 0:
logmsg.update("Message queue: " + str(self.var.msgQ), 'D')
wait_cycle = False
if support.is_yun():
# this is waiting routine to ensure that msg queue is processed by 32u4 part
tmp_br = bridge.get("msg")
if not support.is_empty(tmp_br):
time.sleep(self.setup.timeout)
wait_cycle = True
if not wait_cycle:
to_send = self.var.msgQ.pop()
logmsg.update("Sending message [" + str(to_send) + "]", 'D')
# if we are going to reset, save bridge file
if to_send == "R":
bridge.save(self.setup.bridge_file)
if support.is_yun():
# signal to 32u4 that we have something to process
bridge.put("msg", to_send)
elif support.is_rpi():
if to_send == "H":
# TBI RPI
# uncomment line below for RPi
# action.do(True)
pass
elif to_send == "S":
# TBI RPI
# uncomment line below for RPi
# action.do(False)
pass
elif support.is_win():
# insert windows code here
# print "nt"
logmsg.update("Processing message on Windows: " + str(to_send))
label = ''
for m in matches:
label += f'{m} + '
label = label[:-3]
plt.annotate(label, (x,y), fontsize=8)
# plt.xlabel('Value')
scrub_col = col.replace('/', '-') # replace slashes with dashes to protect filepath
fig_name = os.path.join(mono_folder, f'{scrub_col}.png')
plt.savefig(fig_name)
plt.close()
print('Evaluating completeness')
for i, row in df.iterrows():
# explicit comparisons of bools needed because we are exploiting the ability to mix key datatypes
if not is_empty(row[col]):
has_data = True
# print('Is not empty')
elif single_cols[col] is False:
has_data = True
# print('Does not need data')
elif single_cols[col] is True: # if data is required
has_data = False
# print('Does not have data and deffo needs it')
else: # if we get here, need to see if the companion columns are filled
# if all companion columns are filled, then data is required
companions = [row[c] for c in single_cols[col]]
has_required_companions = all([not is_empty(row[c]) for c in single_cols[col]])
has_data = not has_required_companions
if not has_data: