def test_animate(tmpdir):
"""Test animation."""
_set_backend('auto')
brain = Brain(*std_args, size=100)
brain.add_morphometry('curv')
tmp_name = str(tmpdir.join('test.avi'))
brain.animate(["m"] * 3, n_steps=2)
brain.animate(['l', 'l'], n_steps=2, fname=tmp_name)
# can't rotate in axial plane
pytest.raises(ValueError, brain.animate, ['l', 'd'])
brain.close()
def test_animate():
"""Test animation."""
_set_backend('auto')
brain = Brain(*std_args, size=100)
brain.add_morphometry('curv')
tmp_name = mktemp() + '.avi'
brain.animate(["m"] * 3, n_steps=2)
brain.animate(['l', 'l'], n_steps=2, fname=tmp_name)
# can't rotate in axial plane
assert_raises(ValueError, brain.animate, ['l', 'd'])
brain.close()
def test_animate():
"""Test animation."""
_set_backend('auto')
brain = Brain(*std_args, size=100)
brain.add_morphometry('curv')
tmp_name = mktemp() + '.avi'
brain.animate(["m"] * 3, n_steps=2)
brain.animate(['l', 'l'], n_steps=2, fname=tmp_name)
# can't rotate in axial plane
assert_raises(ValueError, brain.animate, ['l', 'd'])
brain.close()
def test_animate(tmpdir):
"""Test animation."""
_set_backend('auto')
brain = Brain(*std_args, size=100)
brain.add_morphometry('curv')
tmp_name = str(tmpdir.join('test.avi'))
brain.animate(["m"] * 3, n_steps=2)
brain.animate(['l', 'l'], n_steps=2, fname=tmp_name)
# can't rotate in axial plane
pytest.raises(ValueError, brain.animate, ['l', 'd'])
brain.close()
def test_animate():
"""Test animation
"""
mlab.options.backend = 'auto'
brain = Brain(*std_args, config_opts=small_brain)
brain.add_morphometry('curv')
tmp_name = mktemp() + '.avi'
brain.animate(["m"] * 3, n_steps=2)
brain.animate(['l', 'l'], n_steps=2, fname=tmp_name)
# can't rotate in axial plane
assert_raises(ValueError, brain.animate, ['l', 'd'])
brain.close()
def test_animate():
"""Test animation
"""
mlab.options.backend = 'auto'
brain = Brain(*std_args, config_opts=small_brain)
brain.add_morphometry('curv')
tmp_name = mktemp() + '.avi'
brain.animate(["m"] * 3, n_steps=2)
brain.animate(['l', 'l'], n_steps=2, fname=tmp_name)
# can't rotate in axial plane
assert_raises(ValueError, brain.animate, ['l', 'd'])
brain.close()
============================ Animate brain and save movie ============================ """ print __doc__ from surfer import Brain sub = 'fsaverage' hemi = 'lh' surf = 'inflated' brain = Brain(sub, hemi, surf) brain.animate(['l', 'c']) # control number of steps brain.animate(['l', 'm'], n_steps=30) # any path you can think of brain.animate(['l', 'c', 'm', 'r', 'c', 'r', 'l'], n_steps=45) # full turns brain.animate(["m"] * 3) # movies brain.animate(['l', 'l'], n_steps=10, fname='simple_animation.avi') # however, rotating out of the axial plane is not allowed try:
color = '#4D4D4D' #gray
subject_id = "fsaverage"
hemi = 'lh'
surf = 'inflated'
color = '#FF007F'
alpha=0.75
# whole brain
brain = Brain(subject_id, "both", 'inflated', cortex=("gray", -2, 7, True), background='black', alpha=0.6)
for roi_name, seed_coord in zip(roi_names, seed_coords):
print(roi_name)
print(seed_coord)
x = seed_coord[0]
if x > 0 or np.abs(x) < 6:
#brain.add_foci(seed_coord, map_surface="white", color=color,
# scale_factor=1.6, hemi='rh', alpha=alpha)
brain.add_foci(network1_L, map_surface="white", hemi='lh', color="#F5D300", scale_factor=1.6) # Visual/Sensory
brain.add_foci(network2_L, map_surface="white", hemi='lh', color="#09FBD3", scale_factor=1.6) # Limbic
brain.add_foci(network3_L, map_surface="white", hemi='lh', color="#FE53BB", scale_factor=1.6) # Intermediate
brain.add_foci(network4_L, map_surface="white", hemi='lh', color="#A117F2", scale_factor=1.6) # Higher Associative
if x < 0 or np.abs(x) < 6:
#brain.add_foci(seed_coord, map_surface="white", color=color,
# scale_factor=1.6, hemi='lh', alpha=alpha)
brain.add_foci(network1_R, map_surface="white", hemi='rh', color="#F5D300", scale_factor=1.6) # Visual/Sensory
brain.add_foci(network2_R, map_surface="white", hemi='rh', color="#09FBD3", scale_factor=1.6) # Limbic
brain.add_foci(network3_R, map_surface="white", hemi='rh', color="#FE53BB", scale_factor=1.6) # Intermediate
brain.add_foci(network4_R, map_surface="white", hemi='rh', color="#A117F2", scale_factor=1.6) # Higher Associative
# the actual animation:
brain.animate(["m"] * 3, n_steps=100)
============================ Animate brain and save movie ============================ """ print(__doc__) from surfer import Brain sub = 'fsaverage' hemi = 'lh' surf = 'inflated' brain = Brain(sub, hemi, surf) brain.animate(['l', 'c']) # control number of steps brain.animate(['l', 'm'], n_steps=30) # any path you can think of brain.animate(['l', 'c', 'm', 'r', 'c', 'r', 'l'], n_steps=45) # full turns brain.animate(["m"] * 3) # movies brain.animate(['l', 'l'], n_steps=10, fname='simple_animation.avi') # however, rotating out of the axial plane is not allowed try:
