def getsize(fig, w, h):
"use inkscape to calculate the width and height of fig"
import tempfile, commands, os, sys
fname = tempfile.mktemp(suffix=".svg")
svg = fig.SVG()
vb = "%s %s %s %s" % (0, 0, w, h)
svgfig.canvas(svg, width=w, height=h, viewBox=vb).save(fname)
#svg.save(fname)
width = float(commands.getoutput("inkscape -W '%s'" % fname))
height = float(commands.getoutput("inkscape -H '%s'" % fname))
os.remove(fname)
return width, height
def getsize(fig, w, h):
"use inkscape to calculate the width and height of fig"
import tempfile, commands, os, sys
fname = tempfile.mktemp(suffix=".svg")
svg = fig.SVG()
vb = "%s %s %s %s" % (0, 0, w, h)
svgfig.canvas(svg, width=w, height=h, viewBox=vb).save(fname)
#svg.save(fname)
width = float(commands.getoutput("inkscape -W '%s'" % fname))
height = float(commands.getoutput("inkscape -H '%s'" % fname))
os.remove(fname)
return width, height
def toSVG(self):
from svgfig import SVG, canvas
w = self.view.width
h = self.view.height
svg = canvas(width='%dpx' % w, height='%dpx' % h, viewBox='0 0 %d %d' % (w, h), enable_background='new 0 0 %d %d' % (w, h), style='stroke-width:0.7pt; stroke-linejoin: round; stroke:#444; fill:#eee;')
g = SVG('g', id="states")
for circle in self.circles:
c = SVG('circle',cx=circle.x, cy=circle.y, r=circle.r)
c['data-key'] = circle.id
c['data-population'] = circle.value
g.append(c)
meta = SVG('metadata')
views = SVG('views')
view = SVG('view', padding="80", w=w, h=h)
proj = self.globe.toXML()
bbox = self.bbox
bbox = SVG('bbox', x=round(bbox.left,2), y=round(bbox.top,2), w=round(bbox.width,2), h=round(bbox.height,2))
views.append(view)
view.append(proj)
view.append(bbox)
meta.append(views)
svg.append(meta)
svg.append(g)
svg.firefox()
def create_svg(bounds, sizes=None, labels=None, scale=120, font_size=50):
"""
Create a SVG figure from the bounds.
"""
import svgfig as S
fig = S.Fig()
colors = ["purple", "blue", "green", "yellow"]
min_x = bounds[:,:,0].min()
min_y = bounds[:,:,1].min()
max_x = bounds[:,:,0].max()
max_y = bounds[:,:,1].max()
for rect, color in zip(bounds, colors):
fig.d.append(
S.SVG(
"rect",
x=scale*rect[0,0], y=scale*rect[0,1], width=scale*(rect[1,0]-rect[0,0]), height=scale*(rect[1,1]-rect[0,1]),
fill=color, fill_opacity=".2",
rx=10, ry=10,
stroke_width=2
)
)
if None != labels:
fig.d.append(S.Text(scale*bounds[0, 0, 0], scale*bounds[0, 0, 1], labels[0], font_size=font_size, text_anchor="start"))
fig.d.append(S.Text(scale*bounds[1, 1, 0], scale*bounds[1, 0, 1], labels[1], font_size=font_size, text_anchor="end"))
fig.d.append(S.Text(scale*bounds[2, 1, 0], scale*bounds[2, 1, 1]+font_size, labels[2], font_size=font_size, text_anchor="end"))
fig.d.append(S.Text(scale*bounds[3, 0, 0], scale*bounds[3, 1, 1]+font_size, labels[3], font_size=font_size, text_anchor="start"))
return S.canvas(
fig.SVG(),
height="800px", width="800px",
viewBox="%d %d %d %d" % (scale*min_x-font_size, scale*min_y-font_size, scale*(max_x-min_x)+2*font_size, scale*(max_y-min_y)+2*font_size))
def toSVG(self):
from svgfig import SVG, canvas
w = self.view.width
h = self.view.height
svg = canvas(width='%dpx' % w, height='%dpx' % h, viewBox='0 0 %d %d' % (w, h), enable_background='new 0 0 %d %d' % (w, h), style='stroke-width:0.7pt; stroke-linejoin: round; stroke:#444; fill:#eee;')
g = SVG('g', id="gemeinden")
for circle in self.circles:
c = SVG('circle',cx=circle.x, cy=circle.y, r=circle.r)
c['data-key'] = circle.id
c['data-population'] = circle.value
g.append(c)
meta = SVG('metadata')
views = SVG('views')
view = SVG('view', padding="80", w=w, h=h)
proj = self.globe.toXML()
bbox = self.bbox
bbox = SVG('bbox', x=round(bbox.left,2), y=round(bbox.top,2), w=round(bbox.width,2), h=round(bbox.height,2))
views.append(view)
view.append(proj)
view.append(bbox)
meta.append(views)
svg.append(meta)
svg.append(g)
svg.save('cartogram.svg')
def show(self, **kwargs):
""" kwargs:
width=400, height=400, viewBox="0 0 2000 2000"
"""
s = svg.Fig(*self.lines).SVG()
c = svg.canvas(s, **kwargs)
c.inkview()
return self
def draw_shapes(self):
# really ugly redraw everything
self.scene.clear()
self.webview = QGraphicsWebView()
self.webview.setZoomFactor(3.0)
self.scene.setBackgroundBrush(Qt.black)
self.scene.addItem(self.webview)
w = self.width()*.5
h = self.height()*.5
width = "%spx" % (w)
height = "%spx" % (h)
dx = (int(self.parent.gl_dx + 1)/2)*2
dy = (int(self.parent.gl_dy + 1)/2)*2
vx = dx
dy = dy
self.dx = dx
self.dy = dy
print dx, dy
# TODO: clever viewbox calculation
viewbox = "%d %d %d %d" % (-self.q*dx/2, -self.q*dy/2, self.q*dx, self.q*dy)
rect = svgfig.Rect(-dx/2,-dy/2,dx/2,dy/2, fill='black', stroke=None).SVG(trans=self.trans)
dot_field = self.draw_dot_field()
#print self.box.contentsRect()
print width, height, viewbox
svg_g = svgfig.SVG("g")
svg_g.append(rect)
for x in dot_field:
svg_g.append(x)
for shape in self.shapes:
self.set_color(shape['type'])
if 'shape' in shape:
dispatch = {
'circle': self.circle,
'disc': self.disc,
'label': self.label,
'line': self.vertex,
'vertex': self.vertex,
'octagon': self.octagon,
'rect': self.rect,
'polygon': self.polygon,
'hole': self.hole,
}
shape_svg = dispatch.get(shape['shape'], self.skip)(shape)
#print shape_svg
for x in shape_svg:
svg_g.append(x)
#print subs
canvas = svgfig.canvas(svg_g, width=width, height=height, viewBox=viewbox)
xml = canvas.standalone_xml()
#print xml
self.webview.setContent(QtCore.QByteArray(xml))
def draw_shapes(self):
# really ugly redraw everything
self.scene.clear()
self.webview = QGraphicsWebView()
self.webview.setZoomFactor(3.0)
self.scene.setBackgroundBrush(Qt.black)
self.scene.addItem(self.webview)
w = self.width()*.5
h = self.height()*.5
width = "%spx" % (w)
height = "%spx" % (h)
dx = (int(self.parent.gl_dx + 1)/2)*2
dy = (int(self.parent.gl_dy + 1)/2)*2
vx = dx
dy = dy
self.dx = dx
self.dy = dy
print dx, dy
# TODO: clever viewbox calculation
viewbox = "%d %d %d %d" % (-self.q*dx/2, -self.q*dy/2, self.q*dx, self.q*dy)
rect = svgfig.Rect(-dx/2,-dy/2,dx/2,dy/2, fill='black', stroke=None).SVG(trans=self.trans)
dot_field = self.draw_dot_field()
print self.box.contentsRect()
print width, height, viewbox
svg_g = svgfig.SVG("g")
svg_g.append(rect)
for x in dot_field:
svg_g.append(x)
for shape in self.shapes:
self.set_color(shape['type'])
if 'shape' in shape:
dispatch = {
'circle': self.circle,
'disc': self.disc,
'label': self.label,
'line': self.vertex,
'vertex': self.vertex,
'octagon': self.octagon,
'rect': self.rect,
'polygon': self.polygon,
'hole': self.hole,
}
shape_svg = dispatch.get(shape['shape'], self.skip)(shape)
print shape_svg
for x in shape_svg:
svg_g.append(x)
#print subs
canvas = svgfig.canvas(svg_g, width=width, height=height, viewBox=viewbox)
xml = canvas.standalone_xml()
print xml
self.webview.setContent(QtCore.QByteArray(xml))
def __init__( self ):
self.canvas = svgfig.canvas( style="stroke:black; fill:none; stroke-width:1px; stroke-linejoin:round; text-anchor:left" )
self.text = svgfig.SVG( "g" )
self.connectors = svgfig.SVG( "g" )
self.boxes = svgfig.SVG( "g" )
svgfig.Text.defaults[ "font-size" ] = "10px"
self.in_pos = {}
self.out_pos = {}
self.widths = {}
self.max_x = 0
self.max_y = 0
self.max_width = 0
self.data = []
def draw_trailer(rr, rt, d1, d2, d3, d4, d5):
layout = svg.canvas()
layout.attr['width'] = '40in'
layout.attr['height'] = '60in'
layout.attr['viewBox'] = '0 0 40 60'
# draw the wheels
rwheel = svg.SVG("circle", cx=0., cy=rr, r=rr)
twheel = svg.SVG("circle", cx=d2+d4, cy=rt, r=rt)
# draw the trailer hitch
hitch1 = svg.SVG('line', x1=0., y1=rr, x2=0., y2=rr-d1)
hitch2 = svg.SVG('line', x1=0., y1=rr-d1, x2=d2, y2=rr-d1)
hitch = svg.SVG('g', hitch1, hitch2)
# draw the trailer
tr = []
tr.append(svg.SVG("line", x1=d2, y1=rr-d1, x2=d2, y2=rr-d1-d3))
tr.append(svg.SVG("line", x1=d2, y1=rr-d1-d3, x2=d2+d4, y2=rr-d1-d3))
tr.append(svg.SVG('line', x1=d2+d4, y1=rr-d1-d3, x2=d2+d4, y2=rt))
trailer = svg.SVG('g', tr[0], tr[1], tr[2])
# add some dots for the joints
j1 = svg.SVG('circle', cx=d2, cy=rr-d1, r=0.2)
j2 = svg.SVG('circle', cx=d2+d4, cy=rt, r=0.2)
j = svg.SVG('g', j1, j2, stroke='blue', fill='blue')
# draw a rectangle for the pot joint
potrev = svg.SVG('rect', x=(d2+d4)/2, y=rr-d1-d3, width="2", height="1",)
# draw some coordinate axes
start = svg.make_marker('start', 'arrow_start')
end = svg.make_marker('end', 'arrow_end')
newtonian = svg.SVG('path',
d='M -10,0 0,0 0,-10',
marker_start='url(#start)',
marker_end='url(#end)')
group = svg.SVG("g", rwheel, twheel, hitch, trailer, j, potrev, newtonian,
start, end, transform="translate(15, 15)")# rotate(180)")
layout.append(group)
layout.save()
layout.inkview()
return layout
def init_svg_canvas(self, view, bbox, globe):
"""
prepare a blank new svg file
"""
from svgfig import canvas, SVG
options = self.options
w = view.width
h = view.height+2
svg = canvas(width='%dpx' % w, height='%dpx' % h, viewBox='0 0 %d %d' % (w, h), enable_background='new 0 0 %d %d' % (w, h), style='stroke-width:0.7pt; stroke-linejoin: round; stroke:#444; fill:white;')
css = 'path { fill-rule: evenodd; }\n#context path { fill: #eee; stroke: #bbb; } '
if options.graticule:
css += '#graticule path { fill: none; stroke-width:0.25pt; } #graticule .equator { stroke-width: 0.5pt } '
svg.append(SVG('defs', SVG('style', css, type='text/css')))
meta = SVG('metadata')
views = SVG('views')
view = SVG('view', padding=str(options.out_padding), w=w, h=h)
proj = globe.toXML()
bbox = SVG('bbox', x=round(bbox.left,2), y=round(bbox.top,2), w=round(bbox.width,2), h=round(bbox.height,2))
ll = options.llbbox
llbbox = SVG('llbbox', lon0=ll[0],lon1=ll[2],lat0=ll[1],lat1=ll[3])
views.append(view)
view.append(proj)
view.append(bbox)
view.append(llbbox)
meta.append(views)
svg.append(meta)
return svg
def init_svg_canvas(self, opts, proj, view, bbox):
"""
prepare a blank new svg file
"""
from svgfig import canvas, SVG
w = view.width
h = view.height + 2
svg = canvas(width='%dpx' % w, height='%dpx' % h, viewBox='0 0 %d %d' % (w, h), enable_background='new 0 0 %d %d' % (w, h), style='stroke-width:0.7pt; stroke-linejoin: round; stroke:#000; fill:#f3f3f0;')
css = 'path { fill-rule: evenodd; }\n#context path { fill: #eee; stroke: #bbb; } '
#if options.graticule:
# css += '#graticule path { fill: none; stroke-width:0.25pt; } #graticule .equator { stroke-width: 0.5pt } '
svg.append(SVG('defs', SVG('style', css, type='text/css')))
meta = SVG('metadata')
views = SVG('views')
view = SVG('view', padding=str(opts['bounds']['padding']), w=w, h=h)
proj_ = proj.toXML()
bbox = SVG('bbox', x=round(bbox.left, 2), y=round(bbox.top, 2), w=round(bbox.width, 2), h=round(bbox.height, 2))
ll = [-180, -90, 180, 90]
if opts['bounds']['mode'] == "bbox":
ll = opts['bounds']['data']
llbbox = SVG('llbbox', lon0=ll[0], lon1=ll[2], lat0=ll[1], lat1=ll[3])
views.append(view)
view.append(proj_)
view.append(bbox)
view.append(llbbox)
meta.append(views)
svg.append(meta)
return svg
def main():
usage = "usage: %prog [options] inputfile outputfile traitfile"
parser = OptionParser(usage=usage)
parser.add_option("-c", "--count", default=config.COUNT, help="Number of SNPs to draw")
parser.add_option("-o", "--offset", default=config.OFFSET, help="Offset of SNPs to skip")
parser.add_option("-v", "--viewport", default=config.CANVAS_VIEWPORT, help="Viewport to draw", metavar="WIDTHxHEIGHT")
parser.add_option("-m", "--multiply", default=1, help="Multiply the viewport sizes", metavar="FACTOR")
parser.add_option("-s", "--stroke", default=config.STROKE, help="Stroke width", metavar="X.Xpt")
(options, args) = parser.parse_args()
if len(args) != 3:
parser.error("incorrect number of arguments")
# options
count = int(options.count)
offset = int(options.offset)
viewport = options.viewport
multiply = int(options.multiply)
stroke = options.stroke
viewport = [int(d)*multiply for d in viewport.split('x')]
input_file = open(args[0], "r")
trait_file = open(args[2], "r")
dna_drawer = dna.DNADrawer(input_file, trait_file, count, offset, viewport[0], viewport[1])
svg_filters = dna_drawer.get_filters()
dnasvg = dna_drawer.get_svg()
input_file.close()
trait_file.close()
canvas_width = "%dpx" % viewport[0]
canvas_height = "%dpx" % viewport[1]
canvas_viewbox = "0 0 %d %d" % (viewport[0], viewport[1])
svgcanvas = svgfig.canvas(svg_filters, dnasvg, width=canvas_width, height=canvas_height, viewBox=canvas_viewbox, style="stroke:white; fill:cornsilk; stroke-width:%s; stroke-linejoin:round; text-anchor:middle" % stroke)
svgcanvas.save(args[1])
def draw(self, filename, graphshape = None, width = 1280, height = 720, show_labels = False):
"""This does the drawing. It starts by getting a function for the bottom
most layer. As descrbed in Byron & Wattenberg this will control the overall
shape of the graph. It then it prints a stacked graph on top of that bottom
line, whatever shape it is.
"""
# Preprocess some stuff
aspect_ratio = float(width) / float(height)
self.canvas_aspect = aspect_ratio
x_offset = int( -((100 * aspect_ratio) - 100) / 2.0 )
# Get a g_0 depending in desired shape
g_0 = self.themeRiver() # Default (fallbacks)
y_offset = 0
if str(graphshape) == "Stacked_Graph" :
g_0 = self.stackedGraph()
y_offset = 0
if str(graphshape) == "Theme_River" :
g_0 = self.themeRiver()
y_offset = -50
if str(graphshape) == "Wiggle" :
g_0 = self.wiggle()
y_offset = -50
if str(graphshape) == "Weighted_Wiggle" :
g_0 = self.weighted_wiggle()
y_offset = -50
# Initilize a streamgraph groups in SVG.
graph = svgfig.SVG("g", id="StreamGraph")
labels = svgfig.SVG("g", id="Labels")
# Initilize a SVG Window object to do the transormations on each object
window = svgfig.window(self.x_min, self.x_max, 0, self.y_max * 1.3, x_offset, y_offset, int(100 * aspect_ratio), 100)
# Loop through each layer
for layer in range(self.n_layers):
points = []
point_range = range(self.n_points)
# Forwards; draw top of the shape
for i in point_range:
x = self.data[layer][i][0]
y = self.data[layer][i][1]
# Start with g_0 and stack
y_stacked = g_0[i] + y
# Stack!
for l in range(layer):
y_stacked += self.data[l][i][1]
# Add the points to the shape
points.append((x, y_stacked))
# Backwards; draw bottom of the shape
point_range.reverse()
for i in point_range:
x = self.data[layer][i][0]
# This time we don't include this layer
y_stacked = g_0[i]
# Stack!
for l in range(layer):
y_stacked += self.data[l][i][1]
points.append((x,y_stacked))
# Shapes
poly = svgfig.Poly(points, "smooth", stroke="#eeeeee", fill=self.rgb2hex(self.colors[layer]), stroke_width="0.05")
graph.append(poly.SVG(window))
if show_labels:
#label = self.placeLabel(points, layer)
#label = self.test_placeLabel(points, layer)
#label = self.test2_placeLabel(points, layer, window)
label = self.placeLabel2(points, layer)
#for l in label:
# labels.append(l)
labels.append(label.SVG(window))
# End Loop
# Add objects to the canvas and save it
w = str(int(width)) + "px"
h = str(int(height)) + "px"
canv = svgfig.canvas(graph, labels, width=w, height=h)
canv.save(filename)
def main(opts, args):
s = svg.SVG('g', id='viewport')
# display legend
for i, b in enumerate(bases):
bt = svg.SVG("tspan", b, style="font-family:Verdana;font-size:20%")
s.append(
svg.SVG("text",
bt,
x=12 + (i * 10),
y=3,
stroke="none",
fill="black"))
s.append(
svg.SVG("rect",
x=14 + (i * 10),
y=0,
width=4,
height=3,
stroke="none",
fill=colors[b],
fill_opacity=0.5))
reader = open(opts.input_file, 'U')
samples = []
for i in range(int(len(args) / 3)):
index = i * 3
samples.append(
dict(name=args[index],
a_col=args[index + 1],
totals_col=args[index + 2]))
if opts.zoom == 'interactive':
y = 35
else:
y = 25
for i, sample in enumerate(samples):
x = 23 + (i * (WIDTH + GAP))
t = svg.SVG("text",
svg.SVG("tspan",
sample['name'],
style="font-family:Verdana;font-size:25%"),
x=x,
y=y,
transform="rotate(-90 %i,%i)" % (x, y),
stroke="none",
fill="black")
s.append(t)
count = 1
for line in reader:
row = line.split('\t')
highlighted_position = False
show_pos = True
position = row[int(opts.position_col) - 1]
ref = row[int(opts.ref_col) - 1].strip().upper()
# validate
if ref not in bases:
stop_error(
"The reference column (col%s) contains invalid character '%s' at row %i of the dataset."
% (opts.ref_col, ref, count))
# display positions
if opts.zoom == 'interactive':
textx = 0
else:
textx = 7
bt = svg.SVG("tspan",
str(position),
style="font-family:Verdana;font-size:25%")
s.append(
svg.SVG("text",
bt,
x=textx,
y=34 + (count * (HEIGHT + GAP)),
stroke="none",
fill="black"))
s.append(
svg.SVG("rect",
x=0,
y=30 + (count * (HEIGHT + GAP)),
width=14,
height=HEIGHT,
stroke='none',
fill=colors[ref.upper()],
fill_opacity=0.2))
for sample_index, sample in enumerate(samples):
n_a = int(row[int(sample['a_col']) - 1])
n_c = int(row[int(sample['a_col']) + 1 - 1])
n_g = int(row[int(sample['a_col']) + 2 - 1])
n_t = int(row[int(sample['a_col']) + 3 - 1])
total = int(row[int(sample['totals_col']) - 1])
# validate
base_error = validate_bases(n_a, n_c, n_g, n_t, total)
if base_error:
stop_error(
"For sample %i (%s), the number of base %s reads is more than the coverage on row %i."
% (sample_index + 1, sample['name'], base_error, count))
if total:
x = 16 + (sample_index * (WIDTH + GAP))
y = 30 + (count * (HEIGHT + GAP))
width = WIDTH
height = HEIGHT
if count % 2:
s.append(
svg.SVG("rect",
x=x,
y=y,
width=width,
height=height,
stroke='none',
fill='grey',
fill_opacity=0.25))
else:
s.append(
svg.SVG("rect",
x=x,
y=y,
width=width,
height=height,
stroke='none',
fill='grey',
fill_opacity=0.25))
for base, value in enumerate([n_a, n_c, n_g, n_t]):
width = int(math.ceil(value / total * WIDTH))
s.append(
svg.SVG("rect",
x=x,
y=y,
width=width,
height=BAR_WIDTH,
stroke='none',
fill=colors[bases[base]],
fill_opacity=0.6))
y = y + BAR_WIDTH
count = count + 1
if opts.zoom == 'interactive':
canv = svg.canvas(s)
canv.save(opts.output_file)
import fileinput
flag = False
for line in fileinput.input(opts.output_file, inplace=1):
if line.startswith('<svg'):
print '<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1">'
flag = True
continue
else:
if flag:
print '<script type="text/javascript">%s</script>' % SVGPan
flag = False
print line,
else:
zoom = int(opts.zoom)
w = "%ipx" % (x * (10 + zoom))
h = "%ipx" % (y * (2 + zoom))
canv = svg.canvas(s,
width=w,
height=h,
viewBox="0 0 %i %i" % (x + 100, y + 100))
canv.save(opts.output_file)
points.append((x, y))
if len(points) > 3:
poly = Polygon.Polygon(points)
#poly = poly & cropRect
if poly.overlaps(cropRect):
polys.append(poly)
#polys.append(cropRect)
print "exporting SVG"
#Polygon.IO.writeSVG('cropped.svg', polys)
import svgfig
h = str((y1 - y2) * scale * -1)
svg = svgfig.canvas(width='2000px',
height=h + 'px',
viewBox='0 0 2000 ' + h,
style='stroke-width:0.5pt,fill:#fbf5ed')
svg.append(
SVG('rect', width='2000px', height=h + 'px', fill='#006179',
stroke='none'))
def view(x, y):
x = (x - x1) * scale
y = (y - y2) * scale * -1
return (x, y)
# equator
def main(opts, args):
s = svg.SVG('g', id='viewport')
# display legend
for i, b in enumerate( bases ):
bt = svg.SVG("tspan", b, style="font-family:Verdana;font-size:20%")
s.append(svg.SVG("text", bt, x=12+(i*10), y=3, stroke="none", fill="black"))
s.append(svg.SVG("rect", x=14+(i*10), y=0, width=4, height=3,
stroke="none", fill=colors[b], fill_opacity=0.5))
reader = open(opts.input_file, 'U')
samples = []
for i in range(int(len(args)/3)):
index = i*3
samples.append(dict(name=args[index],
a_col=args[index+1],
totals_col=args[index+2]))
if opts.zoom == 'interactive':
y = 35
else:
y = 25
for i, sample in enumerate(samples):
x = 23+(i*(WIDTH+GAP))
t = svg.SVG("text", svg.SVG("tspan", sample['name'], style="font-family:Verdana;font-size:25%"),
x=x, y=y, transform="rotate(-90 %i,%i)" % (x, y), stroke="none", fill="black")
s.append(t)
count=1
for line in reader:
row = line.split('\t')
highlighted_position = False
show_pos = True
position = row[int(opts.position_col)-1]
ref = row[int(opts.ref_col)-1].strip().upper()
# validate
if ref not in bases:
stop_error( "The reference column (col%s) contains invalid character '%s' at row %i of the dataset." % ( opts.ref_col, ref, count ) )
# display positions
if opts.zoom == 'interactive':
textx = 0
else:
textx = 7
bt = svg.SVG("tspan", str(position), style="font-family:Verdana;font-size:25%")
s.append(svg.SVG("text", bt, x=textx, y=34+(count*(HEIGHT+GAP)), stroke="none", fill="black"))
s.append(svg.SVG("rect", x=0, y=30+(count*(HEIGHT+GAP)), width=14, height=HEIGHT,
stroke='none', fill=colors[ref.upper()], fill_opacity=0.2))
for sample_index, sample in enumerate(samples):
n_a = int(row[int(sample['a_col'])-1])
n_c = int(row[int(sample['a_col'])+1-1])
n_g = int(row[int(sample['a_col'])+2-1])
n_t = int(row[int(sample['a_col'])+3-1])
total = int(row[int(sample['totals_col'])-1])
# validate
base_error = validate_bases(n_a, n_c, n_g, n_t, total)
if base_error:
stop_error("For sample %i (%s), the number of base %s reads is more than the coverage on row %i." % (sample_index+1,
sample['name'],
base_error,
count))
if total:
x = 16+(sample_index*(WIDTH+GAP))
y = 30+(count*(HEIGHT+GAP))
width = WIDTH
height = HEIGHT
if count%2:
s.append(svg.SVG("rect", x=x, y=y, width=width, height=height,
stroke='none', fill='grey', fill_opacity=0.25))
else:
s.append(svg.SVG("rect", x=x, y=y, width=width, height=height,
stroke='none', fill='grey', fill_opacity=0.25))
for base, value in enumerate([n_a, n_c, n_g, n_t]):
width = int(math.ceil(value / total * WIDTH))
s.append(svg.SVG("rect", x=x, y=y, width=width, height=BAR_WIDTH,
stroke='none', fill=colors[bases[base]], fill_opacity=0.6))
y = y + BAR_WIDTH
count=count+1
if opts.zoom == 'interactive':
canv = svg.canvas(s)
canv.save(opts.output_file)
import fileinput
flag = False
for line in fileinput.input(opts.output_file, inplace=1):
if line.startswith('<svg'):
print '<svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" version="1.1">'
flag = True
continue
else:
if flag:
print '<script type="text/javascript">%s</script>' % SVGPan
flag = False
print line,
else:
zoom = int(opts.zoom)
w = "%ipx" % (x*(10+zoom))
h = "%ipx" % (y*(2+zoom))
canv = svg.canvas(s, width=w, height=h, viewBox="0 0 %i %i" %(x+100, y+100))
canv.save(opts.output_file)
def generate_workflow_image( self, trans, repository_metadata_id, workflow_name, webapp='community' ):
repository_metadata = get_repository_metadata_by_id( trans, repository_metadata_id )
repository_id = trans.security.encode_id( repository_metadata.repository_id )
changeset_revision = repository_metadata.changeset_revision
metadata = repository_metadata.metadata
workflow_name = decode( workflow_name )
# metadata[ 'workflows' ] is a list of tuples where each contained tuple is
# [ <relative path to the .ga file in the repository>, <exported workflow dict> ]
for workflow_tup in metadata[ 'workflows' ]:
workflow_dict = workflow_tup[1]
if workflow_dict[ 'name' ] == workflow_name:
break
if 'tools' in metadata:
tools_metadata = metadata[ 'tools' ]
else:
tools_metadata = []
workflow, missing_tool_tups = self.__workflow_from_dict( trans, workflow_dict, tools_metadata, repository_id, changeset_revision )
data = []
canvas = svgfig.canvas( style="stroke:black; fill:none; stroke-width:1px; stroke-linejoin:round; text-anchor:left" )
text = svgfig.SVG( "g" )
connectors = svgfig.SVG( "g" )
boxes = svgfig.SVG( "g" )
svgfig.Text.defaults[ "font-size" ] = "10px"
in_pos = {}
out_pos = {}
margin = 5
# Spacing between input/outputs.
line_px = 16
# Store px width for boxes of each step.
widths = {}
max_width, max_x, max_y = 0, 0, 0
for step in workflow.steps:
step.upgrade_messages = {}
module = module_factory.from_workflow_step( trans, repository_id, changeset_revision, tools_metadata, step )
tool_errors = module.type == 'tool' and not module.tool
module_data_inputs = self.__get_data_inputs( step, module )
module_data_outputs = self.__get_data_outputs( step, module, workflow.steps )
step_dict = {
'id' : step.order_index,
'data_inputs' : module_data_inputs,
'data_outputs' : module_data_outputs,
'position' : step.position,
'tool_errors' : tool_errors
}
input_conn_dict = {}
for conn in step.input_connections:
input_conn_dict[ conn.input_name ] = dict( id=conn.output_step.order_index, output_name=conn.output_name )
step_dict[ 'input_connections' ] = input_conn_dict
data.append( step_dict )
x, y = step.position[ 'left' ], step.position[ 'top' ]
count = 0
module_name = self.__get_name( module, missing_tool_tups )
max_len = len( module_name ) * 1.5
text.append( svgfig.Text( x, y + 20, module_name, **{ "font-size": "14px" } ).SVG() )
y += 45
for di in module_data_inputs:
cur_y = y + count * line_px
if step.order_index not in in_pos:
in_pos[ step.order_index ] = {}
in_pos[ step.order_index ][ di[ 'name' ] ] = ( x, cur_y )
text.append( svgfig.Text( x, cur_y, di[ 'label' ] ).SVG() )
count += 1
max_len = max( max_len, len( di[ 'label' ] ) )
if len( module.get_data_inputs() ) > 0:
y += 15
for do in module_data_outputs:
cur_y = y + count * line_px
if step.order_index not in out_pos:
out_pos[ step.order_index ] = {}
out_pos[ step.order_index ][ do[ 'name' ] ] = ( x, cur_y )
text.append( svgfig.Text( x, cur_y, do[ 'name' ] ).SVG() )
count += 1
max_len = max( max_len, len( do['name' ] ) )
widths[ step.order_index ] = max_len * 5.5
max_x = max( max_x, step.position[ 'left' ] )
max_y = max( max_y, step.position[ 'top' ] )
max_width = max( max_width, widths[ step.order_index ] )
for step_dict in data:
tool_unavailable = step_dict[ 'tool_errors' ]
width = widths[ step_dict[ 'id' ] ]
x, y = step_dict[ 'position' ][ 'left' ], step_dict[ 'position' ][ 'top' ]
if tool_unavailable:
fill = "#EBBCB2"
else:
fill = "#EBD9B2"
boxes.append( svgfig.Rect( x - margin, y, x + width - margin, y + 30, fill=fill ).SVG() )
box_height = ( len( step_dict[ 'data_inputs' ] ) + len( step_dict[ 'data_outputs' ] ) ) * line_px + margin
# Draw separator line.
if len( step_dict[ 'data_inputs' ] ) > 0:
box_height += 15
sep_y = y + len( step_dict[ 'data_inputs' ] ) * line_px + 40
text.append( svgfig.Line( x - margin, sep_y, x + width - margin, sep_y ).SVG() )
# Define an input/output box.
boxes.append( svgfig.Rect( x - margin, y + 30, x + width - margin, y + 30 + box_height, fill="#ffffff" ).SVG() )
for conn, output_dict in step_dict[ 'input_connections' ].iteritems():
in_coords = in_pos[ step_dict[ 'id' ] ][ conn ]
# out_pos_index will be a step number like 1, 2, 3...
out_pos_index = output_dict[ 'id' ]
# out_pos_name will be a string like 'o', 'o2', etc.
out_pos_name = output_dict[ 'output_name' ]
if out_pos_index in out_pos:
# out_conn_index_dict will be something like:
# 7: {'o': (824.5, 618)}
out_conn_index_dict = out_pos[ out_pos_index ]
if out_pos_name in out_conn_index_dict:
out_conn_pos = out_pos[ out_pos_index ][ out_pos_name ]
else:
# Take any key / value pair available in out_conn_index_dict.
# A problem will result if the dictionary is empty.
if out_conn_index_dict.keys():
key = out_conn_index_dict.keys()[0]
out_conn_pos = out_pos[ out_pos_index ][ key ]
adjusted = ( out_conn_pos[ 0 ] + widths[ output_dict[ 'id' ] ], out_conn_pos[ 1 ] )
text.append( svgfig.SVG( "circle",
cx=out_conn_pos[ 0 ] + widths[ output_dict[ 'id' ] ] - margin,
cy=out_conn_pos[ 1 ] - margin,
r = 5,
fill="#ffffff" ) )
connectors.append( svgfig.Line( adjusted[ 0 ],
adjusted[ 1 ] - margin,
in_coords[ 0 ] - 10,
in_coords[ 1 ],
arrow_end = "true" ).SVG() )
canvas.append( connectors )
canvas.append( boxes )
canvas.append( text )
width, height = ( max_x + max_width + 50 ), max_y + 300
canvas[ 'width' ] = "%s px" % width
canvas[ 'height' ] = "%s px" % height
canvas[ 'viewBox' ] = "0 0 %s %s" % ( width, height )
trans.response.set_content_type( "image/svg+xml" )
return canvas.standalone_xml()
def generate_workflow_image( trans, workflow_name, repository_metadata_id=None, repository_id=None ):
"""
Return an svg image representation of a workflow dictionary created when the workflow was exported. This method is called
from both Galaxy and the tool shed. When called from the tool shed, repository_metadata_id will have a value and repository_id
will be None. When called from Galaxy, repository_metadata_id will be None and repository_id will have a value.
"""
workflow_name = encoding_util.tool_shed_decode( workflow_name )
if trans.webapp.name == 'community':
# We're in the tool shed.
repository_metadata = suc.get_repository_metadata_by_id( trans, repository_metadata_id )
repository_id = trans.security.encode_id( repository_metadata.repository_id )
changeset_revision = repository_metadata.changeset_revision
metadata = repository_metadata.metadata
else:
# We're in Galaxy.
repository = suc.get_tool_shed_repository_by_id( trans, repository_id )
changeset_revision = repository.changeset_revision
metadata = repository.metadata
# metadata[ 'workflows' ] is a list of tuples where each contained tuple is
# [ <relative path to the .ga file in the repository>, <exported workflow dict> ]
for workflow_tup in metadata[ 'workflows' ]:
workflow_dict = workflow_tup[1]
if workflow_dict[ 'name' ] == workflow_name:
break
if 'tools' in metadata:
tools_metadata = metadata[ 'tools' ]
else:
tools_metadata = []
workflow, missing_tool_tups = get_workflow_from_dict( trans=trans,
workflow_dict=workflow_dict,
tools_metadata=tools_metadata,
repository_id=repository_id,
changeset_revision=changeset_revision )
data = []
canvas = svgfig.canvas( style="stroke:black; fill:none; stroke-width:1px; stroke-linejoin:round; text-anchor:left" )
text = svgfig.SVG( "g" )
connectors = svgfig.SVG( "g" )
boxes = svgfig.SVG( "g" )
svgfig.Text.defaults[ "font-size" ] = "10px"
in_pos = {}
out_pos = {}
margin = 5
# Spacing between input/outputs.
line_px = 16
# Store px width for boxes of each step.
widths = {}
max_width, max_x, max_y = 0, 0, 0
for step in workflow.steps:
step.upgrade_messages = {}
module = module_factory.from_workflow_step( trans, repository_id, changeset_revision, tools_metadata, step )
tool_errors = module.type == 'tool' and not module.tool
module_data_inputs = get_workflow_data_inputs( step, module )
module_data_outputs = get_workflow_data_outputs( step, module, workflow.steps )
step_dict = {
'id' : step.order_index,
'data_inputs' : module_data_inputs,
'data_outputs' : module_data_outputs,
'position' : step.position,
'tool_errors' : tool_errors
}
input_conn_dict = {}
for conn in step.input_connections:
input_conn_dict[ conn.input_name ] = dict( id=conn.output_step.order_index, output_name=conn.output_name )
step_dict[ 'input_connections' ] = input_conn_dict
data.append( step_dict )
x, y = step.position[ 'left' ], step.position[ 'top' ]
count = 0
module_name = get_workflow_module_name( module, missing_tool_tups )
max_len = len( module_name ) * 1.5
text.append( svgfig.Text( x, y + 20, module_name, **{ "font-size": "14px" } ).SVG() )
y += 45
for di in module_data_inputs:
cur_y = y + count * line_px
if step.order_index not in in_pos:
in_pos[ step.order_index ] = {}
in_pos[ step.order_index ][ di[ 'name' ] ] = ( x, cur_y )
text.append( svgfig.Text( x, cur_y, di[ 'label' ] ).SVG() )
count += 1
max_len = max( max_len, len( di[ 'label' ] ) )
if len( module.get_data_inputs() ) > 0:
y += 15
for do in module_data_outputs:
cur_y = y + count * line_px
if step.order_index not in out_pos:
out_pos[ step.order_index ] = {}
out_pos[ step.order_index ][ do[ 'name' ] ] = ( x, cur_y )
text.append( svgfig.Text( x, cur_y, do[ 'name' ] ).SVG() )
count += 1
max_len = max( max_len, len( do['name' ] ) )
widths[ step.order_index ] = max_len * 5.5
max_x = max( max_x, step.position[ 'left' ] )
max_y = max( max_y, step.position[ 'top' ] )
max_width = max( max_width, widths[ step.order_index ] )
for step_dict in data:
tool_unavailable = step_dict[ 'tool_errors' ]
width = widths[ step_dict[ 'id' ] ]
x, y = step_dict[ 'position' ][ 'left' ], step_dict[ 'position' ][ 'top' ]
# Only highlight missing tools if displaying in the tool shed.
if trans.webapp.name == 'community' and tool_unavailable:
fill = "#EBBCB2"
else:
fill = "#EBD9B2"
boxes.append( svgfig.Rect( x - margin, y, x + width - margin, y + 30, fill=fill ).SVG() )
box_height = ( len( step_dict[ 'data_inputs' ] ) + len( step_dict[ 'data_outputs' ] ) ) * line_px + margin
# Draw separator line.
if len( step_dict[ 'data_inputs' ] ) > 0:
box_height += 15
sep_y = y + len( step_dict[ 'data_inputs' ] ) * line_px + 40
text.append( svgfig.Line( x - margin, sep_y, x + width - margin, sep_y ).SVG() )
# Define an input/output box.
boxes.append( svgfig.Rect( x - margin, y + 30, x + width - margin, y + 30 + box_height, fill="#ffffff" ).SVG() )
for conn, output_dict in step_dict[ 'input_connections' ].iteritems():
in_coords = in_pos[ step_dict[ 'id' ] ][ conn ]
# out_pos_index will be a step number like 1, 2, 3...
out_pos_index = output_dict[ 'id' ]
# out_pos_name will be a string like 'o', 'o2', etc.
out_pos_name = output_dict[ 'output_name' ]
if out_pos_index in out_pos:
# out_conn_index_dict will be something like:
# 7: {'o': (824.5, 618)}
out_conn_index_dict = out_pos[ out_pos_index ]
if out_pos_name in out_conn_index_dict:
out_conn_pos = out_pos[ out_pos_index ][ out_pos_name ]
else:
# Take any key / value pair available in out_conn_index_dict.
# A problem will result if the dictionary is empty.
if out_conn_index_dict.keys():
key = out_conn_index_dict.keys()[0]
out_conn_pos = out_pos[ out_pos_index ][ key ]
adjusted = ( out_conn_pos[ 0 ] + widths[ output_dict[ 'id' ] ], out_conn_pos[ 1 ] )
text.append( svgfig.SVG( "circle",
cx=out_conn_pos[ 0 ] + widths[ output_dict[ 'id' ] ] - margin,
cy=out_conn_pos[ 1 ] - margin,
r = 5,
fill="#ffffff" ) )
connectors.append( svgfig.Line( adjusted[ 0 ],
adjusted[ 1 ] - margin,
in_coords[ 0 ] - 10,
in_coords[ 1 ],
arrow_end = "true" ).SVG() )
canvas.append( connectors )
canvas.append( boxes )
canvas.append( text )
width, height = ( max_x + max_width + 50 ), max_y + 300
canvas[ 'width' ] = "%s px" % width
canvas[ 'height' ] = "%s px" % height
canvas[ 'viewBox' ] = "0 0 %s %s" % ( width, height )
trans.response.set_content_type( "image/svg+xml" )
return canvas.standalone_xml()
style += "font-weight:bold;"
else:
style += "font-weight:normal;"
if italic:
style += "font-style:italic;"
else:
style += "font-style:normal;"
style += "font-family:%s" % name
#t1 = SVG("text", content, x=0, y=line_height, style=style)
t1 = SVG("text", content, x=-128, y=300, style=style)
counter += 1
g.append(t1)
svg = canvas()
width = 90
svg.attr['viewBox'] = "0 0 %s %s" % (width, line_height*counter)
svg.attr['width'] = width
svg.attr['height'] = line_height
svg.sub.append(g)
svg.save("%s.svg" % content)
#this works:
#g = SVG("g", *collection, fill_opacity="50%")
#g.save("tmp.svg")
#main.save("tmp.svg")
from grapefruit import Color
from svgfig import SVG,canvas,Text
w = 522
h = 800
svg = canvas(width='%dpx' % w, height='%dpx' % h, viewBox='0 0 %d %d' % (w, h), enable_background='new 0 0 %d %d' % (w, h), style='stroke:none;')
yo = 10
for k in Color.NAMED_COLOR:
c = Color.NewFromHtml(Color.NAMED_COLOR[k], wref=Color.WHITE_REFERENCE['std_D50'])
out = [k]
out.append(c.html)
r,g,b = c.rgb
out.append([int(r*255),int(g*255),int(b*255)])
out.append(list(c.hsv))
out.append(list(c.hsl))
l,a,b = c.lab
out.append([l/100.0,a,b])
#print 'colors.push( ' + str(out) +' );'
print 'colors.'+k+' = "'+c.html+'"'
svg.append(Text(23,yo+15,k,style='font-size:12px').SVG())
svg.append(SVG('rect',10,y=yo,width=20,height=20,fill=c.html))
yo += 24
svg.firefox()
if groups[groupID]["timeEnd"] < link["time"]:
groups[groupID]["timeEnd"] = link["time"]
if groups[groupID]["nodeStart"] > min(link["from"], link["to"]):
groups[groupID]["nodeStart"] = min(link["from"], link["to"])
if groups[groupID]["nodeEnd"] < max(link["from"], link["to"]):
groups[groupID]["nodeEnd"] = max(link["from"], link["to"])
# Draw groups
# for group in groups:
# print "Time start : " + str(groups[group]["timeStart"]*hoffset)
# print "Time end : " + str(groups[group]["timeEnd"]*hoffset)
# print "Node start : " + str(groups[group]["nodeStart"])
# print "Node end : " + str(groups[group]["nodeEnd"])
# g.append(svgfig.SVG("rect", x=str(groups[group]["timeStart"]*hoffset), y=str(groups[group]["nodeStart"]*voffset), width=str(groups[group]["timeEnd"]*hoffset - groups[group]["timeStart"]*hoffset - 21), height=str(groups[group]["nodeEnd"]*voffset - groups[group]["nodeStart"]*voffset), style="fill:blue;stroke:blue;stroke-width:1;fill-opacity:0;stroke-opacity:0.9"))
# Save to svg file
if argv.get("output") is not None:
svgfig.canvas(g, viewBox="0 0 " + str(width) + " " + str(height)).save(
argv["output"])
if not argv["silent"]:
sys.stderr.write("Output generated to " + str(argv["output"]) + ".\n")
else:
svgfig.canvas(g, viewBox="0 0 " + str(width) + " " +
str(height)).save("out.svg")
if not argv["silent"]:
sys.stderr.write(" Output generated to out.svg.\n")
## bbox = svgfig.Rect(1,1,w-1,h-1)
branches = []
labels = []
for n, c in n2c.items():
if n.parent:
pc = n2c[n.parent]
d = ((c.x, c.y), (pc.x, c.y), (pc.x, pc.y))
line = svgfig.Poly(d)
branches.append(line)
if n.label:
label = svgfig.Text(c.x, c.y, n.label, font_size=fontsize)
label.attr["text-anchor"] = "start"
# this should vertically align the point to the middle of the
# text, but doesn't:
# label.attr["alignment-baseline"] ="middle"
# so shift y down
label.y += fontsize / 3
labels.append(label)
fig = svgfig.Fig(svgfig.Fig(*branches), svgfig.Fig(*labels))
w = getwidth(fig, w, h)
svg = fig.SVG()
vb = "%s %s %s %s" % (-10, -10, w + 10, h + 10)
## print svgfig.canvas(svg, width=w, height=h, viewBox=vb).xml()
## svgfig.canvas(svg, width=w, height=h, viewBox=vb).save()
svgfig.canvas(svg, width=w, height=h, viewBox=vb).inkscape()
## svgfig.canvas(svg, width=w, height=h, viewBox=vb).firefox()
def generate_workflow_image(trans, workflow_name, repository_metadata_id=None, repository_id=None):
"""
Return an svg image representation of a workflow dictionary created when the workflow was exported. This method is called
from both Galaxy and the tool shed. When called from the tool shed, repository_metadata_id will have a value and repository_id
will be None. When called from Galaxy, repository_metadata_id will be None and repository_id will have a value.
"""
workflow_name = encoding_util.tool_shed_decode(workflow_name)
if trans.webapp.name == "tool_shed":
# We're in the tool shed.
repository_metadata = metadata_util.get_repository_metadata_by_id(trans, repository_metadata_id)
repository_id = trans.security.encode_id(repository_metadata.repository_id)
changeset_revision = repository_metadata.changeset_revision
metadata = repository_metadata.metadata
else:
# We're in Galaxy.
repository = suc.get_tool_shed_repository_by_id(trans, repository_id)
changeset_revision = repository.changeset_revision
metadata = repository.metadata
# metadata[ 'workflows' ] is a list of tuples where each contained tuple is
# [ <relative path to the .ga file in the repository>, <exported workflow dict> ]
for workflow_tup in metadata["workflows"]:
workflow_dict = workflow_tup[1]
if workflow_dict["name"] == workflow_name:
break
if "tools" in metadata:
tools_metadata = metadata["tools"]
else:
tools_metadata = []
workflow, missing_tool_tups = get_workflow_from_dict(
trans=trans,
workflow_dict=workflow_dict,
tools_metadata=tools_metadata,
repository_id=repository_id,
changeset_revision=changeset_revision,
)
data = []
canvas = svgfig.canvas(style="stroke:black; fill:none; stroke-width:1px; stroke-linejoin:round; text-anchor:left")
text = svgfig.SVG("g")
connectors = svgfig.SVG("g")
boxes = svgfig.SVG("g")
svgfig.Text.defaults["font-size"] = "10px"
in_pos = {}
out_pos = {}
margin = 5
# Spacing between input/outputs.
line_px = 16
# Store px width for boxes of each step.
widths = {}
max_width, max_x, max_y = 0, 0, 0
for step in workflow.steps:
step.upgrade_messages = {}
module = module_factory.from_workflow_step(trans, repository_id, changeset_revision, tools_metadata, step)
tool_errors = module.type == "tool" and not module.tool
module_data_inputs = get_workflow_data_inputs(step, module)
module_data_outputs = get_workflow_data_outputs(step, module, workflow.steps)
step_dict = {
"id": step.order_index,
"data_inputs": module_data_inputs,
"data_outputs": module_data_outputs,
"position": step.position,
"tool_errors": tool_errors,
}
input_conn_dict = {}
for conn in step.input_connections:
input_conn_dict[conn.input_name] = dict(id=conn.output_step.order_index, output_name=conn.output_name)
step_dict["input_connections"] = input_conn_dict
data.append(step_dict)
x, y = step.position["left"], step.position["top"]
count = 0
module_name = get_workflow_module_name(module, missing_tool_tups)
max_len = len(module_name) * 1.5
text.append(svgfig.Text(x, y + 20, module_name, **{"font-size": "14px"}).SVG())
y += 45
for di in module_data_inputs:
cur_y = y + count * line_px
if step.order_index not in in_pos:
in_pos[step.order_index] = {}
in_pos[step.order_index][di["name"]] = (x, cur_y)
text.append(svgfig.Text(x, cur_y, di["label"]).SVG())
count += 1
max_len = max(max_len, len(di["label"]))
if len(module.get_data_inputs()) > 0:
y += 15
for do in module_data_outputs:
cur_y = y + count * line_px
if step.order_index not in out_pos:
out_pos[step.order_index] = {}
out_pos[step.order_index][do["name"]] = (x, cur_y)
text.append(svgfig.Text(x, cur_y, do["name"]).SVG())
count += 1
max_len = max(max_len, len(do["name"]))
widths[step.order_index] = max_len * 5.5
max_x = max(max_x, step.position["left"])
max_y = max(max_y, step.position["top"])
max_width = max(max_width, widths[step.order_index])
for step_dict in data:
tool_unavailable = step_dict["tool_errors"]
width = widths[step_dict["id"]]
x, y = step_dict["position"]["left"], step_dict["position"]["top"]
# Only highlight missing tools if displaying in the tool shed.
if trans.webapp.name == "tool_shed" and tool_unavailable:
fill = "#EBBCB2"
else:
fill = "#EBD9B2"
boxes.append(svgfig.Rect(x - margin, y, x + width - margin, y + 30, fill=fill).SVG())
box_height = (len(step_dict["data_inputs"]) + len(step_dict["data_outputs"])) * line_px + margin
# Draw separator line.
if len(step_dict["data_inputs"]) > 0:
box_height += 15
sep_y = y + len(step_dict["data_inputs"]) * line_px + 40
text.append(svgfig.Line(x - margin, sep_y, x + width - margin, sep_y).SVG())
# Define an input/output box.
boxes.append(svgfig.Rect(x - margin, y + 30, x + width - margin, y + 30 + box_height, fill="#ffffff").SVG())
for conn, output_dict in step_dict["input_connections"].iteritems():
in_coords = in_pos[step_dict["id"]][conn]
# out_pos_index will be a step number like 1, 2, 3...
out_pos_index = output_dict["id"]
# out_pos_name will be a string like 'o', 'o2', etc.
out_pos_name = output_dict["output_name"]
if out_pos_index in out_pos:
# out_conn_index_dict will be something like:
# 7: {'o': (824.5, 618)}
out_conn_index_dict = out_pos[out_pos_index]
if out_pos_name in out_conn_index_dict:
out_conn_pos = out_pos[out_pos_index][out_pos_name]
else:
# Take any key / value pair available in out_conn_index_dict.
# A problem will result if the dictionary is empty.
if out_conn_index_dict.keys():
key = out_conn_index_dict.keys()[0]
out_conn_pos = out_pos[out_pos_index][key]
adjusted = (out_conn_pos[0] + widths[output_dict["id"]], out_conn_pos[1])
text.append(
svgfig.SVG(
"circle",
cx=out_conn_pos[0] + widths[output_dict["id"]] - margin,
cy=out_conn_pos[1] - margin,
r=5,
fill="#ffffff",
)
)
connectors.append(
svgfig.Line(adjusted[0], adjusted[1] - margin, in_coords[0] - 10, in_coords[1], arrow_end="true").SVG()
)
canvas.append(connectors)
canvas.append(boxes)
canvas.append(text)
width, height = (max_x + max_width + 50), max_y + 300
canvas["width"] = "%s px" % width
canvas["height"] = "%s px" % height
canvas["viewBox"] = "0 0 %s %s" % (width, height)
trans.response.set_content_type("image/svg+xml")
return canvas.standalone_xml()
if groups[groupID]["timeStart"] > link["time"]:
groups[groupID]["timeStart"] = link["time"]
if groups[groupID]["timeEnd"] < link["time"]:
groups[groupID]["timeEnd"] = link["time"]
if groups[groupID]["nodeStart"] > min(link["from"], link["to"]):
groups[groupID]["nodeStart"] = min(link["from"], link["to"])
if groups[groupID]["nodeEnd"] < max(link["from"], link["to"]):
groups[groupID]["nodeEnd"] = max(link["from"], link["to"])
# Draw groups
# for group in groups:
# print "Time start : " + str(groups[group]["timeStart"]*hoffset)
# print "Time end : " + str(groups[group]["timeEnd"]*hoffset)
# print "Node start : " + str(groups[group]["nodeStart"])
# print "Node end : " + str(groups[group]["nodeEnd"])
# g.append(svgfig.SVG("rect", x=str(groups[group]["timeStart"]*hoffset), y=str(groups[group]["nodeStart"]*voffset), width=str(groups[group]["timeEnd"]*hoffset - groups[group]["timeStart"]*hoffset - 21), height=str(groups[group]["nodeEnd"]*voffset - groups[group]["nodeStart"]*voffset), style="fill:blue;stroke:blue;stroke-width:1;fill-opacity:0;stroke-opacity:0.9"))
# Save to svg file
if argv.get("output") is not None:
svgfig.canvas(g, viewBox="0 0 " + str(width) + " " + str(height)).save(argv["output"])
if not argv["silent"]:
sys.stderr.write("Output generated to "+ str(argv["output"]) + ".\n")
else:
svgfig.canvas(g, viewBox="0 0 " + str(width) + " " + str(height)).save("out.svg")
if not argv["silent"]:
sys.stderr.write(" Output generated to out.svg.\n")
## bbox = svgfig.Rect(1,1,w-1,h-1)
branches = []
labels = []
for n, c in n2c.items():
if n.parent:
pc = n2c[n.parent]
d = ((c.x, c.y), (pc.x, c.y), (pc.x, pc.y))
line = svgfig.Poly(d)
branches.append(line)
if n.label:
label = svgfig.Text(c.x, c.y, n.label, font_size=fontsize)
label.attr["text-anchor"] = "start"
# this should vertically align the point to the middle of the
# text, but doesn't:
# label.attr["alignment-baseline"] ="middle"
# so shift y down
label.y += fontsize/3
labels.append(label)
fig = svgfig.Fig(svgfig.Fig(*branches),svgfig.Fig(*labels))
w = getwidth(fig, w, h)
svg = fig.SVG()
vb = "%s %s %s %s" % (-10, -10, w+10,h+10)
## print svgfig.canvas(svg, width=w, height=h, viewBox=vb).xml()
## svgfig.canvas(svg, width=w, height=h, viewBox=vb).save()
svgfig.canvas(svg, width=w, height=h, viewBox=vb).inkscape()
## svgfig.canvas(svg, width=w, height=h, viewBox=vb).firefox()
from grapefruit import Color
from svgfig import SVG, canvas, Text
w = 522
h = 800
svg = canvas(width='%dpx' % w,
height='%dpx' % h,
viewBox='0 0 %d %d' % (w, h),
enable_background='new 0 0 %d %d' % (w, h),
style='stroke:none;')
yo = 10
for k in Color.NAMED_COLOR:
c = Color.NewFromHtml(Color.NAMED_COLOR[k],
wref=Color.WHITE_REFERENCE['std_D50'])
out = [k]
out.append(c.html)
r, g, b = c.rgb
out.append([int(r * 255), int(g * 255), int(b * 255)])
out.append(list(c.hsv))
out.append(list(c.hsl))
l, a, b = c.lab
out.append([l / 100.0, a, b])
#print 'colors.push( ' + str(out) +' );'
print 'colors.' + k + ' = "' + c.html + '"'
svg.append(Text(23, yo + 15, k, style='font-size:12px').SVG())
svg.append(SVG('rect', 10, y=yo, width=20, height=20, fill=c.html))
yo += 24
def save(self, name, **kwargs):
s = svg.Fig(*self.lines).SVG()
c = svg.canvas(s, **kwargs)
c.save(name)
return self
def draw(self, outputFile):
self.findOrder()
offset = 1.5 * self.ppux
# Define dimensions
label_margin = 5 * self.max_label_len
origleft = label_margin + 1 * self.ppux
right_margin = self.ppux
width = origleft + self.ppux * math.ceil(self.max_time) + right_margin
svgfig._canvas_defaults["width"] = str(width) + 'px'
arrow_of_time_height = 5
height = 5 + 10 * int(self.nodeID.size() + 1) + arrow_of_time_height
svgfig._canvas_defaults["height"] = str(height) + 'px'
origtop = 10
################
# Draw background lines
for node in self.nodeID.lookUp:
horizonta_axe = self.ppux * self.nodeID.get(node) + origtop
self.g.append(
svgfig.SVG("text",
str(node),
x=str(label_margin),
y=horizonta_axe + 2,
fill="black",
stroke_width=0,
text_anchor="end",
font_size="6"))
self.g.append(
svgfig.SVG("line",
stroke_dasharray="2,2",
stroke_width=0.5,
x1=str(origleft - 5),
y1=horizonta_axe,
x2=width - right_margin,
y2=horizonta_axe))
# Add timearrow
self.g.append(
svgfig.SVG("line",
stroke_width=0.5,
x1=self.ppux,
y1=10 * (self.nodeID.size() + 1),
x2=width - 5,
y2=10 * (self.nodeID.size() + 1)))
self.g.append(
svgfig.SVG("line",
stroke_width=0.5,
x1=width - 8,
y1=10 * (self.nodeID.size() + 1) - 3,
x2=width - 5,
y2=10 * (self.nodeID.size() + 1)))
self.g.append(
svgfig.SVG("line",
stroke_width=0.5,
x1=width - 8,
y1=10 * (self.nodeID.size() + 1) + 3,
x2=width - 5,
y2=10 * (self.nodeID.size() + 1)))
self.g.append(
svgfig.SVG("text",
str("Time"),
x=width - 19,
y=10 * (self.nodeID.size() + 1) - 3,
fill="black",
stroke_width=0,
font_size="6"))
#
# Add time ticks
for i in range(0, int(math.ceil(self.max_time) + 1), 5):
x_tick = i * self.ppux + origleft
self.g.append(
svgfig.SVG("line",
stroke_width=0.5,
x1=str(x_tick),
y1=10 * (self.nodeID.size() + 1) - 3,
x2=str(x_tick),
y2=10 * (self.nodeID.size() + 1) + 3))
self.g.append(
svgfig.SVG("text",
str(i),
x=str(x_tick),
y=10 * (self.nodeID.size() + 1) + 7,
fill="black",
stroke_width=0,
font_size="6"))
for link in self.links:
ts = link.t
node_1 = min(self.nodeID.get(link.u), self.nodeID.get(link.v))
node_2 = max(self.nodeID.get(link.u), self.nodeID.get(link.v))
offset = ts * self.ppux + origleft
y_node1 = 10 * node_1 + origtop
y_node2 = 10 * node_2 + origtop
# Add nodes
self.g.append(
svgfig.SVG("circle",
cx=offset,
cy=y_node1,
r=1,
fill=link.color))
self.g.append(
svgfig.SVG("circle",
cx=offset,
cy=y_node2,
r=1,
fill=link.color))
x = 0.2 * (
(10 * node_2 - 10 * node_1) / math.tan(math.pi / 3)) + offset
y = (y_node1 + y_node2) / 2
param_d = "M" + str(offset) + "," + str(y_node1) +\
" C" + str(x) + "," + str(y) + " " + str(x) + "," + str(y) +\
" " + str(offset) + "," + str(y_node2)
self.g.append(svgfig.SVG("path", stroke=link.color, d=param_d))
self.addDuration({
"x": x,
"y": (y_node1 + y_node2) / 2
}, link.duration, link.duration_color)
# Save to svg file
viewBoxparam = "0 0 " + str(width) + " " + str(height)
svgfig.canvas(self.g, viewBox=viewBoxparam).save(outputFile)
def draw_kakuro_svg():
import svgfig
x_size = 8
y_size = 9
puzzle = (0, 0, 0, 0, 0, 0, (0, 16), (0, 3), 0, 0, 0, 0, 0, (8, 6), 1, 1,
0, (0, 16), (0, 6), 0, (14, 30), 1, 1, 1, (11, 0), 1, 1, (7, 0),
1, 1, (0, 6), 0, (10, 0), 1, 1, (13, 7), 1, 1, 1, (0, 16), 0,
(14, 0), 1, 1, 1, (8, 0), 1, 1, 0, (0, 4), (9, 17), 1, 1, (11,
0), 1,
1, (12, 0), 1, 1, 1, 0, 0, 0, 0, (10, 0), 1, 1, 0, 0, 0, 0, 0)
cells = []
CELL_WIDTH = 20
CELL_HEIGHT = 20
def draw_cell(cell_data):
out = []
if cell_data == 0:
out.append(svgfig.Rect(0, 0, CELL_WIDTH, CELL_HEIGHT,
fill="black"))
elif type(cell_data) == type(1):
out.append(svgfig.Rect(0, 0, CELL_WIDTH, CELL_HEIGHT))
out.append(
svgfig.Text(
10,
10,
cell_data,
text_anchor="middle",
font_size=12,
font_weight=600,
dominant_baseline="middle",
fill="brown",
))
elif type(cell_data) == type(()):
across = cell_data[0]
down = cell_data[1]
out.append(svgfig.Rect(0, 0, CELL_WIDTH, CELL_HEIGHT))
out.append(
svgfig.Line(
0,
0,
CELL_WIDTH,
CELL_HEIGHT,
stroke_width=1,
))
if down == 0:
points = ((0, 0), (0, CELL_HEIGHT), (CELL_WIDTH, CELL_HEIGHT))
out.append(svgfig.Poly(points, "lines", fill="black"))
else:
out.append(
svgfig.Text(
2,
18,
down,
text_anchor="start",
font_size=7,
alignment_baseline="middle",
))
if across == 0:
points = ((0, 0), (CELL_WIDTH, 0), (CELL_WIDTH, CELL_HEIGHT))
out.append(svgfig.Poly(points, "lines", fill="black"))
else:
out.append(
svgfig.Text(
19,
7,
across,
text_anchor="end",
font_size=7,
))
else:
raise Exception("")
return out
def cell(x, y, cell_data):
def t(xi, yi):
return 1 + xi + x * (CELL_WIDTH), 1 + yi + y * (CELL_HEIGHT)
fig = svgfig.Fig(*draw_cell(cell_data), trans=t)
return fig.SVG()
for y in range(y_size):
for x in range(x_size):
cells.append(cell(x, y, puzzle[y * x_size + x]))
g = svgfig.SVG("g", *cells)
c = svgfig.canvas(g,
width="400px",
height="400px",
font_family='Arial Black',
viewBox="0 0 %d %d" %
(x_size * CELL_WIDTH + 2, y_size * CELL_HEIGHT + 2))
c.save('tmp.svg')
def draw_svgfig(self, outputFile):
self.findOrder()
offset = 1.5 * self.ppux
# Define dimensions
label_margin = 5 * self.max_label_len
origleft = label_margin + 1 * self.ppux
right_margin = self.ppux
width = origleft + self.ppux * math.ceil(self.max_time) + right_margin
svgfig._canvas_defaults["width"] = str(width) + 'px'
arrow_of_time_height = 5
height = 5 + 10 * int(self.nodeID.size() + 1) + arrow_of_time_height
svgfig._canvas_defaults["height"] = str(height) + 'px'
origtop = 10
################
# Draw background lines
for node in self.nodeID.lookUp:
horizonta_axe = self.ppux * self.nodeID.get(node) + origtop
self.g.append(svgfig.SVG("text", str(node),
x=str(label_margin),
y=horizonta_axe + 2,
fill="black", stroke_width=0,
text_anchor="end",
font_size="6"))
self.g.append(svgfig.SVG("line", stroke_dasharray="2,2",
stroke_width=0.5,
x1=str(origleft-5),
y1=horizonta_axe,
x2=width - right_margin,
y2=horizonta_axe))
# Add timearrow
self.g.append(svgfig.SVG("line",
stroke_width=0.5,
x1=self.ppux ,
y1=10*(self.nodeID.size()+1),
x2=width-5,
y2=10*(self.nodeID.size()+1)))
self.g.append(svgfig.SVG("line", stroke_width=0.5,
x1=width-8,
y1=10*(self.nodeID.size()+1)-3,
x2=width-5,
y2=10*(self.nodeID.size()+1)))
self.g.append(svgfig.SVG("line", stroke_width=0.5,
x1=width-8,
y1=10*(self.nodeID.size()+1)+3,
x2=width-5,
y2=10*(self.nodeID.size()+1)))
self.g.append(svgfig.SVG("text", str("Time"),
x=width-19,
y=10*(self.nodeID.size()+1)-3,
fill="black", stroke_width=0,
font_size="6"))
#
# Add time ticks
for i in range(0, int(math.ceil(self.max_time)+1), 5):
x_tick = i * self.ppux + origleft
self.g.append(svgfig.SVG("line",
stroke_width=0.5,
x1=str(x_tick),
y1=10*(self.nodeID.size()+1)-3,
x2=str(x_tick),
y2=10*(self.nodeID.size()+1)+3))
self.g.append(svgfig.SVG("text", str(i),
x=str(x_tick), y=10*(self.nodeID.size()+1)+7,
fill="black", stroke_width=0,
font_size="6"))
for link in self.links:
ts = link.t
node_1 = min(self.nodeID.get(link.u), self.nodeID.get(link.v))
node_2 = max(self.nodeID.get(link.u), self.nodeID.get(link.v))
offset = ts * self.ppux + origleft
y_node1 = 10 * node_1 + origtop
y_node2 = 10 * node_2 + origtop
# Add nodes
self.g.append(svgfig.SVG("circle",
cx=offset, cy=y_node1,
r=1, fill=link.color))
self.g.append(svgfig.SVG("circle",
cx=offset, cy=y_node2,
r=1, fill=link.color))
x = 0.2 * ((10 * node_2 - 10 * node_1) / math.tan(math.pi / 3)) + offset
y = (y_node1 + y_node2) / 2
param_d = "M" + str(offset) + "," + str(y_node1) +\
" C" + str(x) + "," + str(y) + " " + str(x) + "," + str(y) +\
" " + str(offset) + "," + str(y_node2)
self.g.append(svgfig.SVG("path", stroke=link.color,
d=param_d))
self.addDuration({"x": x, "y": (y_node1+y_node2)/2}, link.duration, link.duration_color)
# Save to svg file
viewBoxparam = "0 0 " + str(width) + " " + str(height)
svgfig.canvas(self.g, viewBox=viewBoxparam).save(outputFile)
def draw(self,
filename,
graphshape=None,
width=1280,
height=720,
show_labels=False):
"""This does the drawing. It starts by getting a function for the bottom
most layer. As descrbed in Byron & Wattenberg this will control the overall
shape of the graph. It then it prints a stacked graph on top of that bottom
line, whatever shape it is.
"""
# Preprocess some stuff
aspect_ratio = float(width) / float(height)
self.canvas_aspect = aspect_ratio
x_offset = int(-((100 * aspect_ratio) - 100) / 2.0)
# Get a g_0 depending in desired shape
g_0 = self.themeRiver() # Default (fallbacks)
y_offset = 0
if str(graphshape) == "Stacked_Graph":
g_0 = self.stackedGraph()
y_offset = 0
if str(graphshape) == "Theme_River":
g_0 = self.themeRiver()
y_offset = -50
if str(graphshape) == "Wiggle":
g_0 = self.wiggle()
y_offset = -50
if str(graphshape) == "Weighted_Wiggle":
g_0 = self.weighted_wiggle()
y_offset = -50
# Initilize a streamgraph groups in SVG.
graph = svgfig.SVG("g", id="StreamGraph")
labels = svgfig.SVG("g", id="Labels")
# Initilize a SVG Window object to do the transormations on each object
window = svgfig.window(self.x_min, self.x_max, 0,
self.y_max * 1.3, x_offset, y_offset,
int(100 * aspect_ratio), 100)
# Loop through each layer
for layer in range(self.n_layers):
points = []
point_range = range(self.n_points)
# Forwards; draw top of the shape
for i in point_range:
x = self.data[layer][i][0]
y = self.data[layer][i][1]
# Start with g_0 and stack
y_stacked = g_0[i] + y
# Stack!
for l in range(layer):
y_stacked += self.data[l][i][1]
# Add the points to the shape
points.append((x, y_stacked))
# Backwards; draw bottom of the shape
#point_range.reverse()
point_range = reversed(point_range)
for i in point_range:
x = self.data[layer][i][0]
# This time we don't include this layer
y_stacked = g_0[i]
# Stack!
for l in range(layer):
y_stacked += self.data[l][i][1]
points.append((x, y_stacked))
# Shapes
poly = svgfig.Poly(points,
"smooth",
stroke="#eeeeee",
fill=self.rgb2hex(self.colors[layer]),
stroke_width="0.05")
graph.append(poly.SVG(window))
if show_labels:
#label = self.placeLabel(points, layer)
#label = self.test_placeLabel(points, layer)
#label = self.test2_placeLabel(points, layer, window)
label = self.placeLabel2(points, layer)
#for l in label:
# labels.append(l)
labels.append(label.SVG(window))
# End Loop
# Add objects to the canvas and save it
w = str(int(width)) + "px"
h = str(int(height)) + "px"
canv = svgfig.canvas(graph, labels, width=w, height=h)
canv.save(filename)
def svgPathString(self):
return 'M' + 'L'.join(map(str, self.points))
if __name__ == '__main__':
from gisutils import Bounds2D, Point
bbox = Bounds2D(left=0, top=0,width=600,height=400)
from svgfig import canvas, SVG
from random import randint, random
from noise import pnoise1
w = 1000
h = 600
svg = canvas(width='%dpx' % w, height='%dpx' % h, viewBox='0 0 %d %d' % (w, h), enable_background='new 0 0 %d %d' % (w, h), style='stroke-width:1px; stroke-linejoin: round;')
svg.append(SVG('rect', x=bbox.xmin, y=bbox.ymin, width=bbox.width, height=bbox.height, fill="#eee"))
clip = CohenSutherland().clip
for i in range(60):
x0 = randint(0,600)
x1 = randint(0,600)
y0 = randint(0,400)
y1 = randint(0,400)
svg.append(SVG('line', x1=x0, y1=y0, x2=x1, y2=y1, stroke='#999', stroke_width='0.2px'))
try:
x0,y0,x1,y1 = clip(bbox, x0,y0,x1,y1)
svg.append(SVG('line', x1=x0, y1=y0, x2=x1, y2=y1, stroke='#c33', stroke_width='.2px'))
x,y = p(lng, lat)
points.append((x,y))
if len(points) > 3:
poly = Polygon.Polygon(points)
#poly = poly & cropRect
if poly.overlaps(cropRect):
polys.append(poly)
#polys.append(cropRect)
print "exporting SVG"
#Polygon.IO.writeSVG('cropped.svg', polys)
import svgfig
h = str((y1-y2)*scale*-1)
svg = svgfig.canvas(width='2000px', height=h+'px', viewBox='0 0 2000 '+h, style='stroke-width:0.5pt,fill:#fbf5ed')
svg.append(SVG('rect', width='2000px', height=h+'px', fill='#006179', stroke='none'))
def view(x,y):
x = (x - x1) * scale
y = (y - y2) * scale * -1
return (x,y)
# equator
grid = SVG('g')
for lat in range(0,90,10):
p_str = ''
for lng in range(gcrop[1], gcrop[3]):
def draw_kakuro_svg():
import svgfig
x_size = 8
y_size = 9
puzzle = (0,0,0,0,0,0,(0,16),(0,3),
0,0,0,0,0,(8,6),1,1,
0,(0,16),(0,6),0,(14,30),1,1,1,
(11,0),1,1,(7,0),1,1,(0,6),0,
(10,0),1,1,(13,7),1,1,1,(0,16),
0,(14,0),1,1,1,(8,0),1,1,
0,(0,4),(9,17),1,1,(11,0),1,1,
(12,0),1,1,1,0,0,0,0,
(10,0),1,1,0,0,0,0,0
)
cells = []
CELL_WIDTH = 20
CELL_HEIGHT = 20
def draw_cell(cell_data):
out = []
if cell_data == 0:
out.append(svgfig.Rect(0, 0, CELL_WIDTH, CELL_HEIGHT, fill="black"))
elif type(cell_data) == type(1):
out.append(svgfig.Rect(0, 0, CELL_WIDTH, CELL_HEIGHT))
out.append(svgfig.Text(10, 10, cell_data,
text_anchor="middle",
font_size=12,
font_weight=600,
dominant_baseline="middle",
fill="brown",
))
elif type(cell_data) == type(()):
across = cell_data[0]
down = cell_data[1]
out.append(svgfig.Rect(0, 0, CELL_WIDTH, CELL_HEIGHT))
out.append(svgfig.Line(0, 0, CELL_WIDTH, CELL_HEIGHT,
stroke_width=1,
))
if down == 0:
points = ((0,0),(0,CELL_HEIGHT),(CELL_WIDTH,CELL_HEIGHT))
out.append(svgfig.Poly(points, "lines", fill="black"))
else:
out.append(svgfig.Text(2, 18, down,
text_anchor="start",
font_size=7,
alignment_baseline="middle",
))
if across == 0:
points = ((0,0),(CELL_WIDTH,0),(CELL_WIDTH,CELL_HEIGHT))
out.append(svgfig.Poly(points, "lines", fill="black"))
else:
out.append(svgfig.Text(19, 7, across,
text_anchor="end",
font_size=7,
))
else:
raise Exception("")
return out
def cell(x, y, cell_data):
def t(xi,yi):
return 1+xi+x*(CELL_WIDTH), 1+yi+y*(CELL_HEIGHT)
fig = svgfig.Fig(
*draw_cell(cell_data),
trans=t)
return fig.SVG()
for y in range(y_size):
for x in range(x_size):
cells.append(cell(x, y, puzzle[y*x_size+x]))
g = svgfig.SVG("g", *cells)
c = svgfig.canvas(g,
width="400px",
height="400px",
font_family='Arial Black',
viewBox="0 0 %d %d" % (x_size * CELL_WIDTH + 2, y_size * CELL_HEIGHT + 2))
c.save('tmp.svg')
import svgfig
svgfig.canvas(svgfig.Frame(-0.2,
1.2,
0,
3,
svgfig.Line(0, 0.20, 1, 1.65),
svgfig.Line(0, 1.7, 1, 2.26),
xticks={
0: "tuned APEs",
1: "infinite APEs"
},
xminiticks=[],
height=35,
yticks=-7).SVG(),
viewBox="0 0 100 35").save("statsyst.svg")