def test_is_perpendicular():
p1 = Point(0, 0)
p2 = Point(1, 1)
l1 = Line(p1, p2)
l2 = Line(Point(x1, x1), Point(y1, y1))
l1_1 = Line(p1, Point(-x1, x1))
# 2D
assert Line.is_perpendicular(l1, l1_1)
assert Line.is_perpendicular(l1, l2) is False
p = l1.random_point()
assert l1.perpendicular_segment(p) == p
# 3D
assert Line3D.is_perpendicular(Line3D(Point3D(0, 0, 0), Point3D(
1, 0, 0)), Line3D(Point3D(0, 0, 0), Point3D(0, 1, 0))) is True
assert Line3D.is_perpendicular(Line3D(Point3D(0, 0, 0), Point3D(
1, 0, 0)), Line3D(Point3D(0, 1, 0), Point3D(1, 1, 0))) is False
assert Line3D.is_perpendicular(
Line3D(Point3D(0, 0, 0), Point3D(1, 1, 1)),
Line3D(Point3D(x1, x1, x1), Point3D(y1, y1, y1))) is False
def test_point3D():
x = Symbol('x', real=True)
y = Symbol('y', real=True)
x1 = Symbol('x1', real=True)
x2 = Symbol('x2', real=True)
x3 = Symbol('x3', real=True)
y1 = Symbol('y1', real=True)
y2 = Symbol('y2', real=True)
y3 = Symbol('y3', real=True)
half = Rational(1, 2)
p1 = Point3D(x1, x2, x3)
p2 = Point3D(y1, y2, y3)
p3 = Point3D(0, 0, 0)
p4 = Point3D(1, 1, 1)
p5 = Point3D(0, 1, 2)
assert p1 in p1
assert p1 not in p2
assert p2.y == y2
assert (p3 + p4) == p4
assert (p2 - p1) == Point3D(y1 - x1, y2 - x2, y3 - x3)
assert p4*5 == Point3D(5, 5, 5)
assert -p2 == Point3D(-y1, -y2, -y3)
assert Point(34.05, sqrt(3)) == Point(Rational(681, 20), sqrt(3))
assert Point3D.midpoint(p3, p4) == Point3D(half, half, half)
assert Point3D.midpoint(p1, p4) == Point3D(half + half*x1, half + half*x2,
half + half*x3)
assert Point3D.midpoint(p2, p2) == p2
assert p2.midpoint(p2) == p2
assert Point3D.distance(p3, p4) == sqrt(3)
assert Point3D.distance(p1, p1) == 0
assert Point3D.distance(p3, p2) == sqrt(p2.x**2 + p2.y**2 + p2.z**2)
p1_1 = Point3D(x1, x1, x1)
p1_2 = Point3D(y2, y2, y2)
p1_3 = Point3D(x1 + 1, x1, x1)
# according to the description in the docs, points are collinear
# if they like on a single line. Thus a single point should always
# be collinear
assert Point3D.are_collinear(p3)
assert Point3D.are_collinear(p3, p4)
assert Point3D.are_collinear(p3, p4, p1_1, p1_2)
assert Point3D.are_collinear(p3, p4, p1_1, p1_3) is False
assert Point3D.are_collinear(p3, p3, p4, p5) is False
assert p3.intersection(Point3D(0, 0, 0)) == [p3]
assert p3.intersection(p4) == []
assert p4 * 5 == Point3D(5, 5, 5)
assert p4 / 5 == Point3D(0.2, 0.2, 0.2)
raises(ValueError, lambda: Point3D(0, 0, 0) + 10)
# Point differences should be simplified
assert Point3D(x*(x - 1), y, 2) - Point3D(x**2 - x, y + 1, 1) == \
Point3D(0, -1, 1)
a, b = Rational(1, 2), Rational(1, 3)
assert Point(a, b).evalf(2) == \
Point(a.n(2), b.n(2))
raises(ValueError, lambda: Point(1, 2) + 1)
# test transformations
p = Point3D(1, 1, 1)
assert p.scale(2, 3) == Point3D(2, 3, 1)
assert p.translate(1, 2) == Point3D(2, 3, 1)
assert p.translate(1) == Point3D(2, 1, 1)
assert p.translate(z=1) == Point3D(1, 1, 2)
assert p.translate(*p.args) == Point3D(2, 2, 2)
# Test __new__
assert Point3D(Point3D(1, 2, 3), 4, 5, evaluate=False) == Point3D(1, 2, 3)
# Test length property returns correctly
assert p.length == 0
assert p1_1.length == 0
assert p1_2.length == 0
# Test are_colinear type error
raises(TypeError, lambda: Point3D.are_collinear(p, x))
# Test are_coplanar
planar2 = Point3D(1, -1, 1)
planar3 = Point3D(-1, 1, 1)
assert Point3D.are_coplanar(p, planar2, planar3) == True
assert Point3D.are_coplanar(p, planar2, planar3, p3) == False
raises(ValueError, lambda: Point3D.are_coplanar(p, planar2))
planar2 = Point3D(1, 1, 2)
planar3 = Point3D(1, 1, 3)
raises(ValueError, lambda: Point3D.are_coplanar(p, planar2, planar3))
# Test Intersection
assert planar2.intersection(Line3D(p, planar3)) == [Point3D(1, 1, 2)]
# Test Scale
assert planar2.scale(1, 1, 1) == planar2
assert planar2.scale(2, 2, 2, planar3) == Point3D(1, 1, 1)
assert planar2.scale(1, 1, 1, p3) == planar2
# Test Transform
identity = Matrix([[1, 0, 0, 0], [0, 1, 0, 0], [0, 0, 1, 0], [0, 0, 0, 1]])
assert p.transform(identity) == p
trans = Matrix([[1, 0, 0, 1], [0, 1, 0, 1], [0, 0, 1, 1], [0, 0, 0, 1]])
assert p.transform(trans) == Point3D(2, 2, 2)
raises(ValueError, lambda: p.transform(p))
raises(ValueError, lambda: p.transform(Matrix([[1, 0], [0, 1]])))
# Test Equals
assert p.equals(x1) == False
# Test __sub__
p_2d = Point(0, 0)
raises(ValueError, lambda: (p - p_2d))
def test_issue_11617():
p1 = Point3D(1, 0, 2)
p2 = Point2D(2, 0)
with warns(UserWarning):
assert p1.distance(p2) == sqrt(5)
def test_basic_properties_3d():
p1 = Point3D(0, 0, 0)
p2 = Point3D(1, 1, 1)
p3 = Point3D(x1, x1, x1)
p5 = Point3D(x1, 1 + x1, 1)
l1 = Line3D(p1, p2)
l3 = Line3D(p3, p5)
r1 = Ray3D(p1, Point3D(-1, 5, 0))
r3 = Ray3D(p1, p2)
s1 = Segment3D(p1, p2)
assert Line3D((1, 1, 1), direction_ratio=[2, 3, 4]) == Line3D(Point3D(1, 1, 1), Point3D(3, 4, 5))
assert Line3D((1, 1, 1), direction_ratio=[1, 5, 7]) == Line3D(Point3D(1, 1, 1), Point3D(2, 6, 8))
assert Line3D((1, 1, 1), direction_ratio=[1, 2, 3]) == Line3D(Point3D(1, 1, 1), Point3D(2, 3, 4))
assert Line3D(Line3D(p1, Point3D(0, 1, 0))) == Line3D(p1, Point3D(0, 1, 0))
assert Ray3D(Line3D(Point3D(0, 0, 0), Point3D(1, 0, 0))) == Ray3D(p1, Point3D(1, 0, 0))
assert Line3D(p1, p2) != Line3D(p2, p1)
assert l1 != l3
assert l1 != Line3D(p3, Point3D(y1, y1, y1))
assert r3 != r1
assert Ray3D(Point3D(0, 0, 0), Point3D(1, 1, 1)) in Ray3D(Point3D(0, 0, 0), Point3D(2, 2, 2))
assert Ray3D(Point3D(0, 0, 0), Point3D(2, 2, 2)) in Ray3D(Point3D(0, 0, 0), Point3D(1, 1, 1))
assert p1 in l1
assert p1 not in l3
assert l1.direction_ratio == [1, 1, 1]
assert s1.midpoint == Point3D(S.Half, S.Half, S.Half)
# Test zdirection
assert Ray3D(p1, Point3D(0, 0, -1)).zdirection is S.NegativeInfinity
def test_point3D():
p1 = Point3D(x1, x2, x3)
p2 = Point3D(y1, y2, y3)
p3 = Point3D(0, 0, 0)
p4 = Point3D(1, 1, 1)
p5 = Point3D(0, 1, 2)
assert p1 in p1
assert p1 not in p2
assert p2.y == y2
assert (p3 + p4) == p4
assert (p2 - p1) == Point3D(y1 - x1, y2 - x2, y3 - x3)
assert p4*5 == Point3D(5, 5, 5)
assert -p2 == Point3D(-y1, -y2, -y3)
assert Point(34.05, sqrt(3)) == Point(Rational(681, 20), sqrt(3))
assert Point3D.midpoint(p3, p4) == Point3D(half, half, half)
assert Point3D.midpoint(p1, p4) == Point3D(half + half*x1, half + half*x2,
half + half*x3)
assert Point3D.midpoint(p2, p2) == p2
assert p2.midpoint(p2) == p2
assert Point3D.distance(p3, p4) == sqrt(3)
assert Point3D.distance(p1, p1) == 0
assert Point3D.distance(p3, p2) == sqrt(p2.x**2 + p2.y**2 + p2.z**2)
p1_1 = Point3D(x1, x1, x1)
p1_2 = Point3D(y2, y2, y2)
p1_3 = Point3D(x1 + 1, x1, x1)
assert Point3D.is_collinear(p3)
assert Point3D.is_collinear(p3, p4)
assert Point3D.is_collinear(p3, p4, p1_1, p1_2)
assert Point3D.is_collinear(p3, p4, p1_1, p1_3) is False
assert Point3D.is_collinear(p3, p3, p4, p5) is False
assert p3.intersection(Point3D(0, 0, 0)) == [p3]
assert p3.intersection(p4) == []
assert p4 * 5 == Point3D(5, 5, 5)
assert p4 / 5 == Point3D(0.2, 0.2, 0.2)
raises(ValueError, lambda: Point3D(0, 0, 0) + 10)
# Point differences should be simplified
assert Point3D(x*(x - 1), y, 2) - Point3D(x**2 - x, y + 1, 1) == \
Point3D(0, -1, 1)
a, b = Rational(1, 2), Rational(1, 3)
assert Point(a, b).evalf(2) == \
Point(a.n(2), b.n(2))
raises(ValueError, lambda: Point(1, 2) + 1)
# test transformations
p = Point3D(1, 1, 1)
assert p.scale(2, 3) == Point3D(2, 3, 1)
assert p.translate(1, 2) == Point3D(2, 3, 1)
assert p.translate(1) == Point3D(2, 1, 1)
assert p.translate(z=1) == Point3D(1, 1, 2)
assert p.translate(*p.args) == Point3D(2, 2, 2)
def test_are_concurent_3d():
p1 = Point3D(0, 0, 0)
l1 = Line(p1, Point3D(1, 1, 1))
parallel_1 = Line3D(Point3D(0, 0, 0), Point3D(1, 0, 0))
parallel_2 = Line3D(Point3D(0, 1, 0), Point3D(1, 1, 0))
assert Line3D.are_concurrent(l1) is False
assert Line3D.are_concurrent(
l1, Line(Point3D(x1, x1, x1), Point3D(y1, y1, y1))) is False
assert Line3D.are_concurrent(
l1, Line3D(p1, Point3D(x1, x1, x1)),
Line(Point3D(x1, x1, x1), Point3D(x1, 1 + x1, 1))) is True
assert Line3D.are_concurrent(parallel_1, parallel_2) is False
def test_issue_9214():
p1 = Point3D(4, -2, 6)
p2 = Point3D(1, 2, 3)
p3 = Point3D(7, 2, 3)
assert Point3D.are_collinear(p1, p2, p3) is False
def test_plane():
x, y, z, u, v = symbols('x y z u v', real=True)
p1 = Point3D(0, 0, 0)
p2 = Point3D(1, 1, 1)
p3 = Point3D(1, 2, 3)
pl3 = Plane(p1, p2, p3)
pl4 = Plane(p1, normal_vector=(1, 1, 1))
pl4b = Plane(p1, p2)
pl5 = Plane(p3, normal_vector=(1, 2, 3))
pl6 = Plane(Point3D(2, 3, 7), normal_vector=(2, 2, 2))
pl7 = Plane(Point3D(1, -5, -6), normal_vector=(1, -2, 1))
pl8 = Plane(p1, normal_vector=(0, 0, 1))
pl9 = Plane(p1, normal_vector=(0, 12, 0))
pl10 = Plane(p1, normal_vector=(-2, 0, 0))
pl11 = Plane(p2, normal_vector=(0, 0, 1))
l1 = Line3D(Point3D(5, 0, 0), Point3D(1, -1, 1))
l2 = Line3D(Point3D(0, -2, 0), Point3D(3, 1, 1))
l3 = Line3D(Point3D(0, -1, 0), Point3D(5, -1, 9))
assert Plane(p1, p2, p3) != Plane(p1, p3, p2)
assert Plane(p1, p2, p3).is_coplanar(Plane(p1, p3, p2))
assert pl3 == Plane(Point3D(0, 0, 0), normal_vector=(1, -2, 1))
assert pl3 != pl4
assert pl4 == pl4b
assert pl5 == Plane(Point3D(1, 2, 3), normal_vector=(1, 2, 3))
assert pl5.equation(x, y, z) == x + 2 * y + 3 * z - 14
assert pl3.equation(x, y, z) == x - 2 * y + z
assert pl3.p1 == p1
assert pl4.p1 == p1
assert pl5.p1 == p3
assert pl4.normal_vector == (1, 1, 1)
assert pl5.normal_vector == (1, 2, 3)
assert p1 in pl3
assert p1 in pl4
assert p3 in pl5
assert pl3.projection(Point(0, 0)) == p1
p = pl3.projection(Point3D(1, 1, 0))
assert p == Point3D(7 / 6, 2 / 3, 1 / 6)
assert p in pl3
l = pl3.projection_line(Line(Point(0, 0), Point(1, 1)))
assert l == Line3D(Point3D(0, 0, 0), Point3D(7 / 6, 2 / 3, 1 / 6))
assert l in pl3
# get a segment that does not intersect the plane which is also
# parallel to pl3's normal veector
t = Dummy()
r = pl3.random_point()
a = pl3.perpendicular_line(r).arbitrary_point(t)
s = Segment3D(a.subs(t, 1), a.subs(t, 2))
assert s.p1 not in pl3 and s.p2 not in pl3
assert pl3.projection_line(s).equals(r)
assert pl3.projection_line(Segment(Point(1, 0), Point(1, 1))) == \
Segment3D(Point3D(5/6, 1/3, -1/6), Point3D(7/6, 2/3, 1/6))
assert pl6.projection_line(Ray(Point(1, 0), Point(1, 1))) == \
Ray3D(Point3D(14/3, 11/3, 11/3), Point3D(13/3, 13/3, 10/3))
assert pl3.perpendicular_line(r.args) == pl3.perpendicular_line(r)
assert pl3.is_parallel(pl6) is False
assert pl4.is_parallel(pl6)
assert pl6.is_parallel(l1) is False
assert pl3.is_perpendicular(pl6)
assert pl4.is_perpendicular(pl7)
assert pl6.is_perpendicular(pl7)
assert pl6.is_perpendicular(l1) is False
assert pl6.distance(pl6.arbitrary_point(u, v)) == 0
assert pl7.distance(pl7.arbitrary_point(u, v)) == 0
assert pl6.distance(pl6.arbitrary_point(t)) == 0
assert pl7.distance(pl7.arbitrary_point(t)) == 0
assert pl6.p1.distance(pl6.arbitrary_point(t)).simplify() == 1
assert pl7.p1.distance(pl7.arbitrary_point(t)).simplify() == 1
assert pl3.arbitrary_point(t) == Point3D(-sqrt(30)*sin(t)/30 + \
2*sqrt(5)*cos(t)/5, sqrt(30)*sin(t)/15 + sqrt(5)*cos(t)/5, sqrt(30)*sin(t)/6)
assert pl3.arbitrary_point(u, v) == Point3D(2 * u - v, u + 2 * v, 5 * v)
assert pl7.distance(Point3D(1, 3, 5)) == 5 * sqrt(6) / 6
assert pl6.distance(Point3D(0, 0, 0)) == 4 * sqrt(3)
assert pl6.distance(pl6.p1) == 0
assert pl7.distance(pl6) == 0
assert pl7.distance(l1) == 0
assert pl6.distance(Segment3D(Point3D(2, 3, 1), Point3D(1, 3, 4))) == 0
pl6.distance(Plane(Point3D(5, 5, 5), normal_vector=(8, 8, 8))) == sqrt(3)
assert pl6.angle_between(pl3) == pi / 2
assert pl6.angle_between(pl6) == 0
assert pl6.angle_between(pl4) == 0
assert pl7.angle_between(Line3D(Point3D(2, 3, 5), Point3D(2, 4, 6))) == \
-asin(sqrt(3)/6)
assert pl6.angle_between(Ray3D(Point3D(2, 4, 1), Point3D(6, 5, 3))) == \
asin(sqrt(7)/3)
assert pl7.angle_between(Segment3D(Point3D(5, 6, 1), Point3D(1, 2, 4))) == \
asin(7*sqrt(246)/246)
assert are_coplanar(l1, l2, l3) is False
assert are_coplanar(l1) is False
assert are_coplanar(Point3D(2, 7, 2), Point3D(0, 0, 2), Point3D(1, 1, 2),
Point3D(1, 2, 2))
assert are_coplanar(Plane(p1, p2, p3), Plane(p1, p3, p2))
assert Plane.are_concurrent(pl3, pl4, pl5) is False
assert Plane.are_concurrent(pl6) is False
raises(ValueError, lambda: Plane.are_concurrent(Point3D(0, 0, 0)))
raises(ValueError, lambda: Plane((1, 2, 3), normal_vector=(0, 0, 0)))
assert pl3.parallel_plane(Point3D(1, 2, 5)) == Plane(Point3D(1, 2, 5), \
normal_vector=(1, -2, 1))
# perpendicular_plane
p = Plane((0, 0, 0), (1, 0, 0))
# default
assert p.perpendicular_plane() == Plane(Point3D(0, 0, 0), (0, 1, 0))
# 1 pt
assert p.perpendicular_plane(Point3D(1, 0, 1)) == \
Plane(Point3D(1, 0, 1), (0, 1, 0))
# pts as tuples
assert p.perpendicular_plane((1, 0, 1), (1, 1, 1)) == \
Plane(Point3D(1, 0, 1), (0, 0, -1))
a, b = Point3D(0, 0, 0), Point3D(0, 1, 0)
Z = (0, 0, 1)
p = Plane(a, normal_vector=Z)
# case 4
assert p.perpendicular_plane(a, b) == Plane(a, (1, 0, 0))
n = Point3D(*Z)
# case 1
assert p.perpendicular_plane(a, n) == Plane(a, (-1, 0, 0))
# case 2
assert Plane(a, normal_vector=b.args).perpendicular_plane(a, a + b) == \
Plane(Point3D(0, 0, 0), (1, 0, 0))
# case 1&3
assert Plane(b, normal_vector=Z).perpendicular_plane(b, b + n) == \
Plane(Point3D(0, 1, 0), (-1, 0, 0))
# case 2&3
assert Plane(b, normal_vector=b.args).perpendicular_plane(n, n + b) == \
Plane(Point3D(0, 0, 1), (1, 0, 0))
assert pl6.intersection(pl6) == [pl6]
assert pl4.intersection(pl4.p1) == [pl4.p1]
assert pl3.intersection(pl6) == [
Line3D(Point3D(8, 4, 0), Point3D(2, 4, 6))
]
assert pl3.intersection(Line3D(Point3D(1, 2, 4),
Point3D(4, 4,
2))) == [Point3D(2, 8 / 3, 10 / 3)]
assert pl3.intersection(Plane(Point3D(6, 0, 0),
normal_vector=(2, -5, 3))) == [
Line3D(Point3D(-24, -12, 0),
Point3D(-25, -13, -1))
]
assert pl6.intersection(Ray3D(Point3D(2, 3, 1),
Point3D(1, 3, 4))) == [Point3D(-1, 3, 10)]
assert pl6.intersection(Segment3D(Point3D(2, 3, 1),
Point3D(1, 3,
4))) == [Point3D(-1, 3, 10)]
assert pl7.intersection(Line(Point(2, 3),
Point(4, 2))) == [Point3D(13 / 2, 3 / 4, 0)]
r = Ray(Point(2, 3), Point(4, 2))
assert Plane((1, 2, 0), normal_vector=(0, 0, 1)).intersection(r) == [
Ray3D(Point(2, 3), Point(4, 2))
]
assert pl9.intersection(pl8) == [
Line3D(Point3D(0, 0, 0), Point3D(12, 0, 0))
]
assert pl10.intersection(pl11) == [
Line3D(Point3D(0, 0, 1), Point3D(0, 2, 1))
]
assert pl4.intersection(pl8) == [
Line3D(Point3D(0, 0, 0), Point3D(1, -1, 0))
]
assert pl11.intersection(pl8) == []
assert pl9.intersection(pl11) == [
Line3D(Point3D(0, 0, 1), Point3D(12, 0, 1))
]
assert pl9.intersection(pl4) == [
Line3D(Point3D(0, 0, 0), Point3D(12, 0, -12))
]
assert pl3.random_point() in pl3
# test geometrical entity using equals
assert pl4.intersection(pl4.p1)[0].equals(pl4.p1)
assert pl3.intersection(pl6)[0].equals(
Line3D(Point3D(8, 4, 0), Point3D(2, 4, 6)))
pl8 = Plane((1, 2, 0), normal_vector=(0, 0, 1))
assert pl8.intersection(Line3D(p1, (1, 12, 0)))[0].equals(
Line((0, 0, 0), (0.1, 1.2, 0)))
assert pl8.intersection(Ray3D(p1, (1, 12, 0)))[0].equals(
Ray((0, 0, 0), (1, 12, 0)))
assert pl8.intersection(Segment3D(p1, (21, 1, 0)))[0].equals(
Segment3D(p1, (21, 1, 0)))
assert pl8.intersection(Plane(p1,
normal_vector=(0, 0, 112)))[0].equals(pl8)
assert pl8.intersection(Plane(p1, normal_vector=(0, 12, 0)))[0].equals(
Line3D(p1, direction_ratio=(112 * pi, 0, 0)))
assert pl8.intersection(Plane(p1, normal_vector=(11, 0, 1)))[0].equals(
Line3D(p1, direction_ratio=(0, -11, 0)))
assert pl8.intersection(Plane(p1, normal_vector=(1, 0, 11)))[0].equals(
Line3D(p1, direction_ratio=(0, 11, 0)))
assert pl8.intersection(Plane(p1, normal_vector=(-1, -1, -11)))[0].equals(
Line3D(p1, direction_ratio=(1, -1, 0)))
assert pl3.random_point() in pl3
assert len(pl8.intersection(Ray3D(Point3D(0, 2, 3), Point3D(1, 0,
3)))) is 0
# check if two plane are equals
assert pl6.intersection(pl6)[0].equals(pl6)
assert pl8.equals(Plane(p1, normal_vector=(0, 12, 0))) is False
assert pl8.equals(pl8)
assert pl8.equals(Plane(p1, normal_vector=(0, 0, -12)))
assert pl8.equals(Plane(p1, normal_vector=(0, 0, -12 * sqrt(3))))
# issue 8570
l2 = Line3D(
Point3D(
S(50000004459633) / 5000000000000,
-S(891926590718643) / 1000000000000000,
S(231800966893633) / 100000000000000),
Point3D(
S(50000004459633) / 50000000000000,
-S(222981647679771) / 250000000000000,
S(231800966893633) / 100000000000000))
p2 = Plane(
Point3D(
S(402775636372767) / 100000000000000,
-S(97224357654973) / 100000000000000,
S(216793600814789) / 100000000000000),
(-S('9.00000087501922'), -S('4.81170658872543e-13'), S('0.0')))
assert str([i.n(2) for i in p2.intersection(l2)]) == \
'[Point3D(4.0, -0.89, 2.3)]'
def plot_molecule(molecule_name, structures_df):
"""
INPUT:
molecule_name: name of the molecule from the structures DataFrame
structures_df: structures DataFrame
OUTPUT:
fig: 3D plotly figure to visualize the chosen molecule
"""
radius = dict(C=0.77, F=0.71, H=0.38, N=0.75, O=0.73)
element_colors = dict(C='black', F='green', H='white', N='blue', O='red')
molecule_df = structures_df[structures_df['molecule_name'] == molecule_name]
x = molecule_df['x'].values
y = molecule_df['y'].values
z = molecule_df['z'].values
elements = molecule_df['atom'].values
r = [radius[e] for e in elements]
coordinates = pd.DataFrame([x,y,z]).T
def get_bonds():
"""Generates a set of bonds from atomic cartesian coordinates"""
ids = np.arange(coordinates.shape[0])
bonds = dict()
coordinates_compare, radii_compare, ids_compare = coordinates, r, ids
for _ in range(len(ids)):
coordinates_compare = np.roll(coordinates_compare, -1, axis=0)
radii_compare = np.roll(radii_compare, -1, axis=0)
ids_compare = np.roll(ids_compare, -1, axis=0)
distances = np.linalg.norm(coordinates - coordinates_compare, axis=1)
bond_distances = (r + radii_compare) * 1.3
mask = np.logical_and(distances > 0.1, distances < bond_distances)
distances = distances.round(2)
new_bonds = {frozenset([i, j]): dist for i, j, dist in zip(ids[mask], ids_compare[mask], distances[mask])}
bonds.update(new_bonds)
return bonds
def get_bond_trace():
bond_trace = go.Scatter3d(x=[], y=[], z=[], hoverinfo='none', mode='lines',
marker=dict(color='grey', size=7, opacity=1))
for i,j in bonds.keys():
bond_trace['x'] += (x[i], x[j], None)
bond_trace['y'] += (y[i], y[j], None)
bond_trace['z'] += (z[i], z[j], None)
return bond_trace
def get_atom_trace():
"""Creates an atom trace for the plot"""
colors = [element_colors[element] for element in elements]
markers = dict(color=colors, line=dict(color='lightgray', width=2), size=10, symbol='circle', opacity=0.8)
trace = go.Scatter3d(x=x, y=y, z=z, mode='markers', marker=markers,
text=elements, name='', hoverlabel=dict(bgcolor=colors))
return trace
bonds = get_bonds()
annotations_length = []
for (i, j), dist in bonds.items():
p_i, p_j = Point3D(coordinates.values[i]), Point3D(coordinates.values[j])
p = p_i.midpoint(p_j)
annotation = dict(text=dist, x=float(p.x), y=float(p.y), z=float(p.z), showarrow=False, yshift=15)
annotations_length.append(annotation)
data = [get_atom_trace(), get_bond_trace()]
axis_params = dict(showgrid=False, showbackground=False, showticklabels=False, zeroline=False,
titlefont=dict(color='white'))
layout = dict(scene=dict(xaxis=axis_params, yaxis=axis_params, zaxis=axis_params),
margin=dict(r=0, l=0, b=0, t=0), showlegend=False, annotations=[
go.layout.Annotation(
text='Molecule Name:<br>{}'.format(molecule_name),
align='left',
showarrow=False,
xref='paper',
yref='paper',
x=0.95,
y=0.95,
bordercolor='black',
borderwidth=1
)
])
fig = go.Figure(data=data, layout=layout)
return fig
def test_point3D():
p1 = Point3D(x1, x2, x3)
p2 = Point3D(y1, y2, y3)
p3 = Point3D(0, 0, 0)
p4 = Point3D(1, 1, 1)
p5 = Point3D(0, 1, 2)
assert p1 in p1
assert p1 not in p2
assert p2.y == y2
assert (p3 + p4) == p4
assert (p2 - p1) == Point3D(y1 - x1, y2 - x2, y3 - x3)
assert p4 * 5 == Point3D(5, 5, 5)
assert -p2 == Point3D(-y1, -y2, -y3)
assert Point(34.05, sqrt(3)) == Point(Rational(681, 20), sqrt(3))
assert Point3D.midpoint(p3, p4) == Point3D(half, half, half)
assert Point3D.midpoint(p1,
p4) == Point3D(half + half * x1, half + half * x2,
half + half * x3)
assert Point3D.midpoint(p2, p2) == p2
assert p2.midpoint(p2) == p2
assert Point3D.distance(p3, p4) == sqrt(3)
assert Point3D.distance(p1, p1) == 0
assert Point3D.distance(p3, p2) == sqrt(p2.x**2 + p2.y**2 + p2.z**2)
p1_1 = Point3D(x1, x1, x1)
p1_2 = Point3D(y2, y2, y2)
p1_3 = Point3D(x1 + 1, x1, x1)
assert Point3D.is_collinear(p3)
assert Point3D.is_collinear(p3, p4)
assert Point3D.is_collinear(p3, p4, p1_1, p1_2)
assert Point3D.is_collinear(p3, p4, p1_1, p1_3) is False
assert Point3D.is_collinear(p3, p3, p4, p5) is False
assert p3.intersection(Point3D(0, 0, 0)) == [p3]
assert p3.intersection(p4) == []
assert p4 * 5 == Point3D(5, 5, 5)
assert p4 / 5 == Point3D(0.2, 0.2, 0.2)
raises(ValueError, lambda: Point3D(0, 0, 0) + 10)
# Point differences should be simplified
assert Point3D(x*(x - 1), y, 2) - Point3D(x**2 - x, y + 1, 1) == \
Point3D(0, -1, 1)
a, b = Rational(1, 2), Rational(1, 3)
assert Point(a, b).evalf(2) == \
Point(a.n(2), b.n(2))
raises(ValueError, lambda: Point(1, 2) + 1)
# test transformations
p = Point3D(1, 1, 1)
assert p.scale(2, 3) == Point3D(2, 3, 1)
assert p.translate(1, 2) == Point3D(2, 3, 1)
assert p.translate(1) == Point3D(2, 1, 1)
assert p.translate(z=1) == Point3D(1, 1, 2)
assert p.translate(*p.args) == Point3D(2, 2, 2)
def test_line3d():
x = Symbol('x', real=True)
y = Symbol('y', real=True)
z = Symbol('z', real=True)
k = Symbol('k', real=True)
x1 = Symbol('x1', real=True)
y1 = Symbol('y1', real=True)
p1 = Point3D(0, 0, 0)
p2 = Point3D(1, 1, 1)
p3 = Point3D(x1, x1, x1)
p4 = Point3D(y1, y1, y1)
p5 = Point3D(x1, 1 + x1, 1)
p6 = Point3D(1, 0, 1)
p7 = Point3D(0, 1, 1)
p8 = Point3D(2, 0, 3)
p9 = Point3D(2, 1, 4)
l1 = Line3D(p1, p2)
l2 = Line3D(p3, p4)
l3 = Line3D(p3, p5)
l4 = Line3D(p1, p6)
l5 = Line3D(p1, p7)
l6 = Line3D(p8, p9)
l7 = Line3D(p2, p9)
raises(ValueError, lambda: Line3D(Point3D(0, 0, 0), Point3D(0, 0, 0)))
assert Line3D((1, 1, 1), direction_ratio=[2, 3, 4]) == \
Line3D(Point3D(1, 1, 1), Point3D(3, 4, 5))
assert Line3D((1, 1, 1), direction_ratio=[1, 5, 7 ]) == \
Line3D(Point3D(1, 1, 1), Point3D(2, 6, 8))
assert Line3D((1, 1, 1), direction_ratio=[1, 2, 3]) == \
Line3D(Point3D(1, 1, 1), Point3D(2, 3, 4))
raises(TypeError, lambda: Line3D((1, 1), 1))
assert Line3D(p1, p2) != Line3D(p2, p1)
assert l1 != l3
assert l1.is_parallel(l1) # same as in 2D
assert l1 != l2
assert l1.direction_ratio == [1, 1, 1]
assert l1.length == oo
assert l1.equation() == (x, y, z, k)
assert l2.equation() == \
((x - x1)/(-x1 + y1), (-x1 + y)/(-x1 + y1), (-x1 + z)/(-x1 + y1), k)
assert p1 in l1
assert p1 not in l3
# Orthogonality
p1_1 = Point3D(x1, x1, x1)
l1_1 = Line3D(p1, p1_1)
assert Line3D.is_perpendicular(l1, l2) is False
p = l1.arbitrary_point()
raises(NotImplementedError, lambda: l1.perpendicular_segment(p))
# Parallelity
assert l1.parallel_line(p1_1) == Line3D(Point3D(x1, x1, x1),
Point3D(x1 + 1, x1 + 1, x1 + 1))
assert l1.parallel_line(p1_1.args) == \
Line3D(Point3D(x1, x1, x1), Point3D(x1 + 1, x1 + 1, x1 + 1))
# Intersection
assert intersection(l1, p1) == [p1]
assert intersection(l1, p5) == []
assert intersection(l1, l1.parallel_line(p1)) == [
Line3D(Point3D(0, 0, 0), Point3D(1, 1, 1))
]
# issue 8517
line3 = Line3D(Point3D(4, 0, 1), Point3D(0, 4, 1))
line4 = Line3D(Point3D(0, 0, 1), Point3D(4, 4, 1))
assert line3.intersection(line4) == [Point3D(2, 2, 1)]
assert line3.is_parallel(line4) is False
assert Line3D((0, 1, 2),
(0, 2, 3)).intersection(Line3D((0, 1, 2), (0, 1, 1))) == []
ray0 = Ray3D((0, 0), (3, 0))
ray1 = Ray3D((1, 0), (3, 0))
assert ray0.intersection(ray1) == [ray1]
assert ray1.intersection(ray0) == [ray1]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(1, 0), (2, 0))) == [Segment3D((1, 0), (2, 0))]
assert Segment3D((1, 0), (2, 0)).intersection(Segment3D(
(0, 0), (3, 0))) == [Segment3D((1, 0), (2, 0))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(3, 0), (4, 0))) == [Point3D((3, 0))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(2, 0), (5, 0))) == [Segment3D((3, 0), (2, 0))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(-2, 0), (1, 0))) == [Segment3D((0, 0), (1, 0))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(-2, 0), (0, 0))) == [Point3D(0, 0, 0)]
# issue 7757
p = Ray3D(Point3D(1, 0, 0), Point3D(-1, 0, 0))
q = Ray3D(Point3D(0, 1, 0), Point3D(0, -1, 0))
assert intersection(p, q) == [Point3D(0, 0, 0)]
# Concurrency
assert Line3D.are_concurrent(l1) is False
assert Line3D.are_concurrent(l1, l2)
assert Line3D.are_concurrent(l1, l1_1, l3) is False
parallel_1 = Line3D(Point3D(0, 0, 0), Point3D(1, 0, 0))
parallel_2 = Line3D(Point3D(0, 1, 0), Point3D(1, 1, 0))
assert Line3D.are_concurrent(parallel_1, parallel_2) == False
# Finding angles
l1_1 = Line3D(p1, Point3D(5, 0, 0))
assert Line3D.angle_between(l1, l1_1), acos(sqrt(3) / 3)
# Testing Rays and Segments (very similar to Lines)
assert Ray3D((1, 1, 1), direction_ratio=[4, 4, 4]) == \
Ray3D(Point3D(1, 1, 1), Point3D(5, 5, 5))
assert Ray3D((1, 1, 1), direction_ratio=[1, 2, 3]) == \
Ray3D(Point3D(1, 1, 1), Point3D(2, 3, 4))
assert Ray3D((1, 1, 1), direction_ratio=[1, 1, 1]) == \
Ray3D(Point3D(1, 1, 1), Point3D(2, 2, 2))
r1 = Ray3D(p1, Point3D(-1, 5, 0))
r2 = Ray3D(p1, Point3D(-1, 1, 1))
r3 = Ray3D(p1, p2)
r4 = Ray3D(p2, p1)
r5 = Ray3D(Point3D(0, 1, 1), Point3D(1, 2, 0))
assert l1.projection(r1) == [
Ray3D(Point3D(0, 0, 0), Point3D(4 / 3, 4 / 3, 4 / 3))
]
assert l1.projection(r2) == [
Ray3D(Point3D(0, 0, 0), Point3D(1 / 3, 1 / 3, 1 / 3))
]
assert r3 != r1
t = Symbol('t', real=True)
assert Ray3D((1, 1, 1), direction_ratio=[1, 2, 3]).arbitrary_point() == \
Point3D(t + 1, 2*t + 1, 3*t + 1)
r6 = Ray3D(Point3D(0, 0, 0), Point3D(0, 4, 0))
r7 = Ray3D(Point3D(0, 1, 1), Point3D(0, -1, 1))
assert r6.intersection(r7) == []
s1 = Segment3D(p1, p2)
s2 = Segment3D(p3, p4)
assert s1.midpoint == \
Point3D(Rational(1, 2), Rational(1, 2), Rational(1, 2))
assert s2.length == sqrt(3) * sqrt((x1 - y1)**2)
assert Segment3D((1, 1, 1), (2, 3, 4)).arbitrary_point() == \
Point3D(t + 1, 2*t + 1, 3*t + 1)
# Segment contains
s = Segment3D((0, 1, 0), (0, 1, 0))
assert Point3D(0, 1, 0) in s
s = Segment3D((1, 0, 0), (1, 0, 0))
assert Point3D(1, 0, 0) in s
# Testing distance from a Segment to an object
s1 = Segment3D(Point3D(0, 0, 0), Point3D(1, 1, 1))
s2 = Segment3D(Point3D(1 / 2, 1 / 2, 1 / 2), Point3D(1, 0, 1))
pt1 = Point3D(0, 0, 0)
pt2 = Point3D(Rational(3) / 2, Rational(3) / 2, Rational(3) / 2)
assert s1.distance(pt1) == 0
assert s2.distance(pt1) == sqrt(3) / 2
assert s2.distance(pt2) == 2
assert s1.distance((0, 0, 0)) == 0
assert s2.distance((0, 0, 0)) == sqrt(3) / 2
# Line to point
p1, p2 = Point3D(0, 0, 0), Point3D(1, 1, 1)
s = Line3D(p1, p2)
assert s.distance(Point3D(-1, 1, 1)) == 2 * sqrt(6) / 3
assert s.distance(Point3D(1, -1, 1)) == 2 * sqrt(6) / 3
assert s.distance(Point3D(2, 2, 2)) == 0
assert s.distance((2, 2, 2)) == 0
assert s.distance((1, -1, 1)) == 2 * sqrt(6) / 3
assert Line3D((0, 0, 0), (0, 1, 0)).distance(p1) == 0
assert Line3D((0, 0, 0), (0, 1, 0)).distance(p2) == sqrt(2)
assert Line3D((0, 0, 0), (1, 0, 0)).distance(p1) == 0
assert Line3D((0, 0, 0), (1, 0, 0)).distance(p2) == sqrt(2)
# Ray to point
r = Ray3D(p1, p2)
assert r.distance(Point3D(-1, -1, -1)) == sqrt(3)
assert r.distance(Point3D(1, 1, 1)) == 0
assert r.distance((-1, -1, -1)) == sqrt(3)
assert r.distance((1, 1, 1)) == 0
assert Ray3D((1, 1, 1), (2, 2, 2)).distance(Point3D(1.5, 3, 1)) == \
sqrt(17)/2
# Special cases of projection and intersection
r1 = Ray3D(Point3D(1, 1, 1), Point3D(2, 2, 2))
r2 = Ray3D(Point3D(2, 2, 2), Point3D(0, 0, 0))
r3 = Ray3D(Point3D(1, 1, 1), Point3D(-1, -1, -1))
r4 = Ray3D(Point3D(0, 4, 2), Point3D(-1, -5, -1))
r5 = Ray3D(Point3D(2, 2, 2), Point3D(3, 3, 3))
assert intersection(r1, r2) == \
[Segment3D(Point3D(1, 1, 1), Point3D(2, 2, 2))]
assert intersection(r1, r3) == [Point3D(1, 1, 1)]
r5 = Ray3D(Point3D(0, 0, 0), Point3D(1, 1, 1))
r6 = Ray3D(Point3D(0, 0, 0), Point3D(2, 2, 2))
assert r5 in r6
assert r6 in r5
s1 = Segment3D(Point3D(0, 0, 0), Point3D(2, 2, 2))
s2 = Segment3D(Point3D(-1, 5, 2), Point3D(-5, -10, 0))
assert intersection(r1,
s1) == [Segment3D(Point3D(1, 1, 1), Point3D(2, 2, 2))]
l1 = Line3D(Point3D(0, 0, 0), Point3D(3, 4, 0))
r1 = Ray3D(Point3D(0, 0, 0), Point3D(3, 4, 0))
s1 = Segment3D(Point3D(0, 0, 0), Point3D(3, 4, 0))
assert intersection(l1, r1) == [r1]
assert intersection(l1, s1) == [s1]
assert intersection(r1, l1) == [r1]
assert intersection(s1, r1) == [s1]
# check that temporary symbol is Dummy
assert Line3D((0, 0), (t, t)).perpendicular_line((0, 1)) == \
Line3D(Point3D(0, 1, 0), Point3D(1/2, 1/2, 0))
assert Line3D((0, 0), (t, t)).perpendicular_segment((0, 1)) == \
Segment3D(Point3D(0, 1, 0), Point3D(1/2, 1/2, 0))
assert Line3D((0, 0), (t, t)).intersection(Line3D((0, 1), (t, t))) == \
[Point3D(t, t, 0)]
assert Line3D((0, 0, 0), (x, y, z)).contains((2 * x, 2 * y, 2 * z))
# Test is_perpendicular
perp_1 = Line3D(p1, Point3D(0, 1, 0))
assert Line3D.is_perpendicular(parallel_1, perp_1) is True
assert Line3D.is_perpendicular(parallel_1, parallel_2) is False
# Test projection
assert parallel_1.projection(Point3D(5, 5, 0)) == Point3D(5, 0, 0)
assert parallel_1.projection(parallel_2) == [parallel_1]
raises(GeometryError, lambda: parallel_1.projection(Plane(p1, p2, p6)))
# Test __new__
assert Line3D(perp_1) == perp_1
raises(ValueError, lambda: Line3D(p1))
# Test contains
pt2d = Point(1.0, 1.0)
assert perp_1.contains(pt2d) is False
# Test equals
assert perp_1.equals(pt2d) is False
col1 = Line3D(Point3D(0, 0, 0), Point3D(1, 0, 0))
col2 = Line3D(Point3D(-5, 0, 0), Point3D(-1, 0, 0))
assert col1.equals(col2) is True
assert col1.equals(perp_1) is False
# Begin ray
# Test __new__
assert Ray3D(col1) == Ray3D(p1, Point3D(1, 0, 0))
raises(ValueError, lambda: Ray3D(pt2d))
# Test zdirection
negz = Ray3D(p1, Point3D(0, 0, -1))
assert negz.zdirection == S.NegativeInfinity
# Test contains
assert negz.contains(Segment3D(p1, Point3D(0, 0, -10))) is True
assert negz.contains(Segment3D(Point3D(1, 1, 1), Point3D(2, 2,
2))) is False
posy = Ray3D(p1, Point3D(0, 1, 0))
posz = Ray3D(p1, Point3D(0, 0, 1))
assert posy.contains(p1) is True
assert posz.contains(p1) is True
assert posz.contains(pt2d) is False
ray1 = Ray3D(Point3D(1, 1, 1), Point3D(1, 0, 0))
raises(TypeError, lambda: ray1.contains([]))
# Test equals
assert negz.equals(pt2d) is False
assert negz.equals(negz) is True
assert ray1.is_similar(Line3D(Point3D(1, 1, 1), Point3D(1, 0, 0))) is True
assert ray1.is_similar(perp_1) is False
raises(NotImplementedError, lambda: ray1.is_similar(ray1))
# Begin Segment
seg1 = Segment3D(p1, Point3D(1, 0, 0))
raises(TypeError, lambda: seg1.contains([]))
seg2 = Segment3D(Point3D(2, 2, 2), Point3D(3, 2, 2))
assert seg1.contains(seg2) is False
def test_issue_8615():
a = Line3D(Point3D(6, 5, 0), Point3D(6, -6, 0))
b = Line3D(Point3D(6, -1, 19 / 10), Point3D(6, -1, 0))
assert a.intersection(b) == [Point3D(6, -1, 0)]
def test_bisectors():
r1 = Line3D(Point3D(0, 0, 0), Point3D(1, 0, 0))
r2 = Line3D(Point3D(0, 0, 0), Point3D(0, 1, 0))
bisections = r1.bisectors(r2)
assert bisections == [
Line3D(Point3D(0, 0, 0), Point3D(1, 1, 0)),
Line3D(Point3D(0, 0, 0), Point3D(1, -1, 0))
]
ans = [
Line3D(Point3D(0, 0, 0), Point3D(1, 0, 1)),
Line3D(Point3D(0, 0, 0), Point3D(-1, 0, 1))
]
l1 = (0, 0, 0), (0, 0, 1)
l2 = (0, 0), (1, 0)
for a, b in cartes((Line, Segment, Ray), repeat=2):
assert a(*l1).bisectors(b(*l2)) == ans
def test_direction_cosine():
p1 = Point3D(0, 0, 0)
p2 = Point3D(1, 1, 1)
assert p1.direction_cosine(Point3D(1, 0, 0)) == [1, 0, 0]
assert p1.direction_cosine(Point3D(0, 1, 0)) == [0, 1, 0]
assert p1.direction_cosine(Point3D(0, 0, pi)) == [0, 0, 1]
assert p1.direction_cosine(Point3D(5, 0, 0)) == [1, 0, 0]
assert p1.direction_cosine(Point3D(0, sqrt(3), 0)) == [0, 1, 0]
assert p1.direction_cosine(Point3D(0, 0, 5)) == [0, 0, 1]
assert p1.direction_cosine(Point3D(2.4, 2.4,
0)) == [sqrt(2) / 2,
sqrt(2) / 2, 0]
assert p1.direction_cosine(Point3D(
1, 1, 1)) == [sqrt(3) / 3, sqrt(3) / 3,
sqrt(3) / 3]
assert p1.direction_cosine(Point3D(
-12, 0 - 15)) == [-4 * sqrt(41) / 41, -5 * sqrt(41) / 41, 0]
assert p2.direction_cosine(Point3D(
0, 0, 0)) == [-sqrt(3) / 3, -sqrt(3) / 3, -sqrt(3) / 3]
assert p2.direction_cosine(Point3D(1, 1, 12)) == [0, 0, 1]
assert p2.direction_cosine(Point3D(12, 1,
12)) == [sqrt(2) / 2, 0,
sqrt(2) / 2]
def test_length():
s2 = Segment3D(Point3D(x1, x1, x1), Point3D(y1, y1, y1))
assert Line(Point(0, 0), Point(1, 1)).length == oo
assert s2.length == sqrt(3) * sqrt((x1 - y1)**2)
assert Line3D(Point3D(0, 0, 0), Point3D(1, 1, 1)).length == oo
def test_intersection_2d():
p1 = Point(0, 0)
p2 = Point(1, 1)
p3 = Point(x1, x1)
p4 = Point(y1, y1)
l1 = Line(p1, p2)
l3 = Line(Point(0, 0), Point(3, 4))
r1 = Ray(Point(1, 1), Point(2, 2))
r2 = Ray(Point(0, 0), Point(3, 4))
r4 = Ray(p1, p2)
r6 = Ray(Point(0, 1), Point(1, 2))
r7 = Ray(Point(0.5, 0.5), Point(1, 1))
s1 = Segment(p1, p2)
s2 = Segment(Point(0.25, 0.25), Point(0.5, 0.5))
s3 = Segment(Point(0, 0), Point(3, 4))
assert intersection(l1, p1) == [p1]
assert intersection(l1, Point(x1, 1 + x1)) == []
assert intersection(l1, Line(p3, p4)) in [[l1], [Line(p3, p4)]]
assert intersection(l1, l1.parallel_line(Point(x1, 1 + x1))) == []
assert intersection(l3, l3) == [l3]
assert intersection(l3, r2) == [r2]
assert intersection(l3, s3) == [s3]
assert intersection(s3, l3) == [s3]
assert intersection(Segment(Point(-10, 10), Point(10, 10)),
Segment(Point(-5, -5), Point(-5, 5))) == []
assert intersection(r2, l3) == [r2]
assert intersection(r1,
Ray(Point(2, 2),
Point(0,
0))) == [Segment(Point(1, 1), Point(2, 2))]
assert intersection(r1, Ray(Point(1, 1), Point(-1, -1))) == [Point(1, 1)]
assert intersection(r1, Segment(Point(0, 0), Point(
2, 2))) == [Segment(Point(1, 1), Point(2, 2))]
assert r4.intersection(s2) == [s2]
assert r4.intersection(Segment(Point(2, 3), Point(3, 4))) == []
assert r4.intersection(Segment(Point(-1, -1), Point(
0.5, 0.5))) == [Segment(p1, Point(0.5, 0.5))]
assert r4.intersection(Ray(p2, p1)) == [s1]
assert Ray(p2, p1).intersection(r6) == []
assert r4.intersection(r7) == r7.intersection(r4) == [r7]
assert Ray3D((0, 0), (3, 0)).intersection(Ray3D(
(1, 0), (3, 0))) == [Ray3D((1, 0), (3, 0))]
assert Ray3D((1, 0), (3, 0)).intersection(Ray3D(
(0, 0), (3, 0))) == [Ray3D((1, 0), (3, 0))]
assert Ray(Point(0, 0), Point(0, 4)).intersection(Ray(Point(0, 1), Point(0, -1))) == \
[Segment(Point(0, 0), Point(0, 1))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(1, 0), (2, 0))) == [Segment3D((1, 0), (2, 0))]
assert Segment3D((1, 0), (2, 0)).intersection(Segment3D(
(0, 0), (3, 0))) == [Segment3D((1, 0), (2, 0))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(3, 0), (4, 0))) == [Point3D((3, 0))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(2, 0), (5, 0))) == [Segment3D((2, 0), (3, 0))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(-2, 0), (1, 0))) == [Segment3D((0, 0), (1, 0))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(-2, 0), (0, 0))) == [Point3D(0, 0)]
assert s1.intersection(Segment(Point(1, 1), Point(2, 2))) == [Point(1, 1)]
assert s1.intersection(Segment(Point(0.5, 0.5), Point(
1.5, 1.5))) == [Segment(Point(0.5, 0.5), p2)]
assert s1.intersection(Segment(Point(4, 4), Point(5, 5))) == []
assert s1.intersection(Segment(Point(-1, -1), p1)) == [p1]
assert s1.intersection(Segment(Point(-1, -1), Point(
0.5, 0.5))) == [Segment(p1, Point(0.5, 0.5))]
assert s1.intersection(Line(Point(1, 0), Point(2, 1))) == []
assert s1.intersection(s2) == [s2]
assert s2.intersection(s1) == [s2]
assert asa(120, 8, 52) == \
Triangle(
Point(0, 0),
Point(8, 0),
Point(-4 * cos(19 * pi / 90) / sin(2 * pi / 45),
4 * sqrt(3) * cos(19 * pi / 90) / sin(2 * pi / 45)))
assert Line((0, 0), (1, 1)).intersection(Ray((1, 0),
(1, 2))) == [Point(1, 1)]
assert Line((0, 0), (1, 1)).intersection(Segment((1, 0),
(1, 2))) == [Point(1, 1)]
assert Ray((0, 0), (1, 1)).intersection(Ray((1, 0),
(1, 2))) == [Point(1, 1)]
assert Ray((0, 0), (1, 1)).intersection(Segment((1, 0),
(1, 2))) == [Point(1, 1)]
assert Ray((0, 0), (10, 10)).contains(Segment((1, 1), (2, 2))) is True
assert Segment((1, 1), (2, 2)) in Line((0, 0), (10, 10))
# 16628 - this should be fast
p0 = Point2D(S(249) / 5, S(497999) / 10000)
p1 = Point2D(
(-58977084786 * sqrt(405639795226) + 2030690077184193 + 20112207807 *
sqrt(630547164901) + 99600 * sqrt(255775022850776494562626)) /
(2000 * sqrt(255775022850776494562626) +
1991998000 * sqrt(405639795226) + 1991998000 * sqrt(630547164901) +
1622561172902000),
(-498000 * sqrt(255775022850776494562626) - 995999 * sqrt(630547164901)
+ 90004251917891999 + 496005510002 * sqrt(405639795226)) /
(10000 * sqrt(255775022850776494562626) +
9959990000 * sqrt(405639795226) + 9959990000 * sqrt(630547164901) +
8112805864510000))
p2 = Point2D(S(497) / 10, -S(497) / 10)
p3 = Point2D(-S(497) / 10, -S(497) / 10)
l = Line(p0, p1)
s = Segment(p2, p3)
n = (-52673223862 * sqrt(405639795226) - 15764156209307469 -
9803028531 * sqrt(630547164901) +
33200 * sqrt(255775022850776494562626))
d = sqrt(405639795226) + 315274080450 + 498000 * sqrt(630547164901) + sqrt(
255775022850776494562626)
assert intersection(l, s) == [Point2D(n / d * S(3) / 2000, -S(497) / 10)]
def test_projection():
p1 = Point(0, 0)
p2 = Point3D(0, 0, 0)
p3 = Point(-x1, x1)
l1 = Line(p1, Point(1, 1))
l2 = Line3D(Point3D(0, 0, 0), Point3D(1, 0, 0))
l3 = Line3D(p2, Point3D(1, 1, 1))
r1 = Ray(Point(1, 1), Point(2, 2))
assert Line(Point(x1, x1),
Point(y1, y1)).projection(Point(y1, y1)) == Point(y1, y1)
assert Line(Point(x1, x1),
Point(x1, 1 + x1)).projection(Point(1, 1)) == Point(x1, 1)
assert Segment(Point(0, 4),
Point(-2,
2)).projection(r1) == Segment(Point(0, 4),
Point(-1, 3))
assert Segment(Point(0, 4),
Point(-2,
2)).projection(r1) == Segment(Point(0, 4),
Point(-1, 3))
assert l1.projection(p3) == p1
assert l1.projection(Ray(p1, Point(-1, 5))) == Ray(Point(0, 0),
Point(2, 2))
assert l1.projection(Ray(p1, Point(-1, 1))) == p1
assert r1.projection(Ray(Point(1, 1), Point(-1, -1))) == Point(1, 1)
assert r1.projection(Ray(Point(0, 4),
Point(-1,
-5))) == Segment(Point(1, 1), Point(2, 2))
assert r1.projection(Segment(Point(-1, 5), Point(-5, -10))) == Segment(
Point(1, 1), Point(2, 2))
assert r1.projection(Ray(Point(1, 1), Point(-1, -1))) == Point(1, 1)
assert r1.projection(Ray(Point(0, 4),
Point(-1,
-5))) == Segment(Point(1, 1), Point(2, 2))
assert r1.projection(Segment(Point(-1, 5), Point(-5, -10))) == Segment(
Point(1, 1), Point(2, 2))
assert l3.projection(Ray3D(p2, Point3D(-1, 5, 0))) == Ray3D(
Point3D(0, 0, 0), Point3D(4 / 3, 4 / 3, 4 / 3))
assert l3.projection(Ray3D(p2, Point3D(-1, 1, 1))) == Ray3D(
Point3D(0, 0, 0), Point3D(1 / 3, 1 / 3, 1 / 3))
assert l2.projection(Point3D(5, 5, 0)) == Point3D(5, 0)
assert l2.projection(Line3D(Point3D(0, 1, 0), Point3D(1, 1, 0))).equals(l2)
def test_distance_3d():
p1, p2 = Point3D(0, 0, 0), Point3D(1, 1, 1)
p3 = Point3D(Rational(3) / 2, Rational(3) / 2, Rational(3) / 2)
s1 = Segment3D(Point3D(0, 0, 0), Point3D(1, 1, 1))
s2 = Segment3D(Point3D(1 / 2, 1 / 2, 1 / 2), Point3D(1, 0, 1))
r = Ray3D(p1, p2)
assert s1.distance(p1) == 0
assert s2.distance(p1) == sqrt(3) / 2
assert s2.distance(p3) == 2 * sqrt(6) / 3
assert s1.distance((0, 0, 0)) == 0
assert s2.distance((0, 0, 0)) == sqrt(3) / 2
assert s1.distance(p1) == 0
assert s2.distance(p1) == sqrt(3) / 2
assert s2.distance(p3) == 2 * sqrt(6) / 3
assert s1.distance((0, 0, 0)) == 0
assert s2.distance((0, 0, 0)) == sqrt(3) / 2
# Line to point
assert Line3D(p1, p2).distance(Point3D(-1, 1, 1)) == 2 * sqrt(6) / 3
assert Line3D(p1, p2).distance(Point3D(1, -1, 1)) == 2 * sqrt(6) / 3
assert Line3D(p1, p2).distance(Point3D(2, 2, 2)) == 0
assert Line3D(p1, p2).distance((2, 2, 2)) == 0
assert Line3D(p1, p2).distance((1, -1, 1)) == 2 * sqrt(6) / 3
assert Line3D((0, 0, 0), (0, 1, 0)).distance(p1) == 0
assert Line3D((0, 0, 0), (0, 1, 0)).distance(p2) == sqrt(2)
assert Line3D((0, 0, 0), (1, 0, 0)).distance(p1) == 0
assert Line3D((0, 0, 0), (1, 0, 0)).distance(p2) == sqrt(2)
# Ray to point
assert r.distance(Point3D(-1, -1, -1)) == sqrt(3)
assert r.distance(Point3D(1, 1, 1)) == 0
assert r.distance((-1, -1, -1)) == sqrt(3)
assert r.distance((1, 1, 1)) == 0
assert Ray3D((0, 0, 0), (1, 1, 2)).distance((-1, -1, 2)) == 4 * sqrt(3) / 3
assert Ray3D((1, 1, 1), (2, 2, 2)).distance(Point3D(1.5, -3,
-1)) == Rational(9) / 2
assert Ray3D((1, 1, 1), (2, 2, 2)).distance(Point3D(1.5, 3,
1)) == sqrt(78) / 6
def test_point3D():
x = Symbol('x', real=True)
y = Symbol('y', real=True)
x1 = Symbol('x1', real=True)
x2 = Symbol('x2', real=True)
x3 = Symbol('x3', real=True)
y1 = Symbol('y1', real=True)
y2 = Symbol('y2', real=True)
y3 = Symbol('y3', real=True)
half = Rational(1, 2)
p1 = Point3D(x1, x2, x3)
p2 = Point3D(y1, y2, y3)
p3 = Point3D(0, 0, 0)
p4 = Point3D(1, 1, 1)
p5 = Point3D(0, 1, 2)
assert p1 in p1
assert p1 not in p2
assert p2.y == y2
assert (p3 + p4) == p4
assert (p2 - p1) == Point3D(y1 - x1, y2 - x2, y3 - x3)
assert p4*5 == Point3D(5, 5, 5)
assert -p2 == Point3D(-y1, -y2, -y3)
assert Point(34.05, sqrt(3)) == Point(Rational(681, 20), sqrt(3))
assert Point3D.midpoint(p3, p4) == Point3D(half, half, half)
assert Point3D.midpoint(p1, p4) == Point3D(half + half*x1, half + half*x2,
half + half*x3)
assert Point3D.midpoint(p2, p2) == p2
assert p2.midpoint(p2) == p2
assert Point3D.distance(p3, p4) == sqrt(3)
assert Point3D.distance(p1, p1) == 0
assert Point3D.distance(p3, p2) == sqrt(p2.x**2 + p2.y**2 + p2.z**2)
p1_1 = Point3D(x1, x1, x1)
p1_2 = Point3D(y2, y2, y2)
p1_3 = Point3D(x1 + 1, x1, x1)
Point3D.are_collinear(p3)
assert Point3D.are_collinear(p3, p4)
assert Point3D.are_collinear(p3, p4, p1_1, p1_2)
assert Point3D.are_collinear(p3, p4, p1_1, p1_3) is False
assert Point3D.are_collinear(p3, p3, p4, p5) is False
assert p3.intersection(Point3D(0, 0, 0)) == [p3]
assert p3.intersection(p4) == []
assert p4 * 5 == Point3D(5, 5, 5)
assert p4 / 5 == Point3D(0.2, 0.2, 0.2)
raises(ValueError, lambda: Point3D(0, 0, 0) + 10)
# Point differences should be simplified
assert Point3D(x*(x - 1), y, 2) - Point3D(x**2 - x, y + 1, 1) == \
Point3D(0, -1, 1)
a, b = Rational(1, 2), Rational(1, 3)
assert Point(a, b).evalf(2) == \
Point(a.n(2), b.n(2))
raises(ValueError, lambda: Point(1, 2) + 1)
# test transformations
p = Point3D(1, 1, 1)
assert p.scale(2, 3) == Point3D(2, 3, 1)
assert p.translate(1, 2) == Point3D(2, 3, 1)
assert p.translate(1) == Point3D(2, 1, 1)
assert p.translate(z=1) == Point3D(1, 1, 2)
assert p.translate(*p.args) == Point3D(2, 2, 2)
# Test __new__
assert Point3D(0.1, 0.2, evaluate=False, on_morph='ignore').args[0].is_Float
# Test length property returns correctly
assert p.length == 0
assert p1_1.length == 0
assert p1_2.length == 0
# Test are_colinear type error
raises(TypeError, lambda: Point3D.are_collinear(p, x))
# Test are_coplanar
assert Point.are_coplanar()
assert Point.are_coplanar((1, 2, 0), (1, 2, 0), (1, 3, 0))
assert Point.are_coplanar((1, 2, 0), (1, 2, 3))
with warnings.catch_warnings(record=True) as w:
raises(ValueError, lambda: Point2D.are_coplanar((1, 2), (1, 2, 3)))
assert Point3D.are_coplanar((1, 2, 0), (1, 2, 3))
assert Point.are_coplanar((0, 0, 0), (1, 1, 0), (1, 1, 1), (1, 2, 1)) is False
planar2 = Point3D(1, -1, 1)
planar3 = Point3D(-1, 1, 1)
assert Point3D.are_coplanar(p, planar2, planar3) == True
assert Point3D.are_coplanar(p, planar2, planar3, p3) == False
assert Point.are_coplanar(p, planar2)
planar2 = Point3D(1, 1, 2)
planar3 = Point3D(1, 1, 3)
assert Point3D.are_coplanar(p, planar2, planar3) # line, not plane
plane = Plane((1, 2, 1), (2, 1, 0), (3, 1, 2))
assert Point.are_coplanar(*[plane.projection(((-1)**i, i)) for i in range(4)])
# all 2D points are coplanar
assert Point.are_coplanar(Point(x, y), Point(x, x + y), Point(y, x + 2)) is True
# Test Intersection
assert planar2.intersection(Line3D(p, planar3)) == [Point3D(1, 1, 2)]
# Test Scale
assert planar2.scale(1, 1, 1) == planar2
assert planar2.scale(2, 2, 2, planar3) == Point3D(1, 1, 1)
assert planar2.scale(1, 1, 1, p3) == planar2
# Test Transform
identity = Matrix([[1, 0, 0, 0], [0, 1, 0, 0], [0, 0, 1, 0], [0, 0, 0, 1]])
assert p.transform(identity) == p
trans = Matrix([[1, 0, 0, 1], [0, 1, 0, 1], [0, 0, 1, 1], [0, 0, 0, 1]])
assert p.transform(trans) == Point3D(2, 2, 2)
raises(ValueError, lambda: p.transform(p))
raises(ValueError, lambda: p.transform(Matrix([[1, 0], [0, 1]])))
# Test Equals
assert p.equals(x1) == False
# Test __sub__
p_4d = Point(0, 0, 0, 1)
with warnings.catch_warnings(record=True) as w:
assert p - p_4d == Point(1, 1, 1, -1)
assert len(w) == 1
p_4d3d = Point(0, 0, 1, 0)
with warnings.catch_warnings(record=True) as w:
assert p - p_4d3d == Point(1, 1, 0, 0)
assert len(w) == 1
def test_equals():
p1 = Point(0, 0)
p2 = Point(1, 1)
l1 = Line(p1, p2)
l2 = Line((0, 5), slope=m)
l3 = Line(Point(x1, x1), Point(x1, 1 + x1))
assert l1.perpendicular_line(p1.args).equals(
Line(Point(0, 0), Point(1, -1)))
assert l1.perpendicular_line(p1).equals(Line(Point(0, 0), Point(1, -1)))
assert Line(Point(x1, x1), Point(y1, y1)).parallel_line(Point(-x1, x1)). \
equals(Line(Point(-x1, x1), Point(-y1, 2 * x1 - y1)))
assert l3.parallel_line(p1.args).equals(Line(Point(0, 0), Point(0, -1)))
assert l3.parallel_line(p1).equals(Line(Point(0, 0), Point(0, -1)))
assert (l2.distance(Point(2, 3)) -
2 * abs(m + 1) / sqrt(m**2 + 1)).equals(0)
assert Line3D(p1, Point3D(0, 1, 0)).equals(Point(1.0, 1.0)) is False
assert Line3D(Point3D(0, 0, 0), Point3D(1, 0, 0)).equals(
Line3D(Point3D(-5, 0, 0), Point3D(-1, 0, 0))) is True
assert Line3D(Point3D(0, 0, 0), Point3D(1, 0, 0)).equals(
Line3D(p1, Point3D(0, 1, 0))) is False
assert Ray3D(p1, Point3D(0, 0, -1)).equals(Point(1.0, 1.0)) is False
assert Ray3D(p1, Point3D(0, 0, -1)).equals(Ray3D(p1, Point3D(0, 0,
-1))) is True
assert Line3D((0, 0), (t, t)).perpendicular_line(Point(0, 1, 0)).equals(
Line3D(Point3D(0, 1, 0), Point3D(1 / 2, 1 / 2, 0)))
assert Line3D((0, 0), (t, t)).perpendicular_segment(Point(0, 1, 0)).equals(
Segment3D((0, 1), (1 / 2, 1 / 2)))
assert Line3D(p1, Point3D(0, 1, 0)).equals(Point(1.0, 1.0)) is False
def test_arguments():
"""Functions accepting `Point` objects in `geometry`
should also accept tuples and lists and
automatically convert them to points."""
singles2d = ((1,2), [1,2], Point(1,2))
singles2d2 = ((1,3), [1,3], Point(1,3))
doubles2d = cartes(singles2d, singles2d2)
p2d = Point2D(1,2)
singles3d = ((1,2,3), [1,2,3], Point(1,2,3))
doubles3d = subsets(singles3d, 2)
p3d = Point3D(1,2,3)
singles4d = ((1,2,3,4), [1,2,3,4], Point(1,2,3,4))
doubles4d = subsets(singles4d, 2)
p4d = Point(1,2,3,4)
# test 2D
test_single = ['distance', 'is_scalar_multiple', 'taxicab_distance', 'midpoint', 'intersection', 'dot', 'equals', '__add__', '__sub__']
test_double = ['is_concyclic', 'is_collinear']
for p in singles2d:
Point2D(p)
for func in test_single:
for p in singles2d:
getattr(p2d, func)(p)
for func in test_double:
for p in doubles2d:
getattr(p2d, func)(*p)
# test 3D
test_double = ['is_collinear']
for p in singles3d:
Point3D(p)
for func in test_single:
for p in singles3d:
getattr(p3d, func)(p)
for func in test_double:
for p in doubles2d:
getattr(p3d, func)(*p)
# test 4D
test_double = ['is_collinear']
for p in singles4d:
Point(p)
for func in test_single:
for p in singles4d:
getattr(p4d, func)(p)
for func in test_double:
for p in doubles4d:
getattr(p4d, func)(*p)
# test evaluate=False for ops
x = Symbol('x')
a = Point(0, 1)
assert a + (0.1, x) == Point(0.1, 1 + x)
a = Point(0, 1)
assert a/10.0 == Point(0.0, 0.1)
a = Point(0, 1)
assert a*10.0 == Point(0.0, 10.0)
# test evaluate=False when changing dimensions
u = Point(.1, .2, evaluate=False)
u4 = Point(u, dim=4, on_morph='ignore')
assert u4.args == (.1, .2, 0, 0)
assert all(i.is_Float for i in u4.args[:2])
# and even when *not* changing dimensions
assert all(i.is_Float for i in Point(u).args)
# never raise error if creating an origin
assert Point(dim=3, on_morph='error')
def test_intersection_2d():
p1 = Point(0, 0)
p2 = Point(1, 1)
p3 = Point(x1, x1)
p4 = Point(y1, y1)
l1 = Line(p1, p2)
l3 = Line(Point(0, 0), Point(3, 4))
r1 = Ray(Point(1, 1), Point(2, 2))
r2 = Ray(Point(0, 0), Point(3, 4))
r4 = Ray(p1, p2)
r6 = Ray(Point(0, 1), Point(1, 2))
r7 = Ray(Point(0.5, 0.5), Point(1, 1))
s1 = Segment(p1, p2)
s2 = Segment(Point(0.25, 0.25), Point(0.5, 0.5))
s3 = Segment(Point(0, 0), Point(3, 4))
assert intersection(l1, p1) == [p1]
assert intersection(l1, Point(x1, 1 + x1)) == []
assert intersection(l1, Line(p3, p4)) in [[l1], [Line(p3, p4)]]
assert intersection(l1, l1.parallel_line(Point(x1, 1 + x1))) == []
assert intersection(l3, l3) == [l3]
assert intersection(l3, r2) == [r2]
assert intersection(l3, s3) == [s3]
assert intersection(s3, l3) == [s3]
assert intersection(Segment(Point(-10, 10), Point(10, 10)),
Segment(Point(-5, -5), Point(-5, 5))) == []
assert intersection(r2, l3) == [r2]
assert intersection(r1,
Ray(Point(2, 2),
Point(0,
0))) == [Segment(Point(1, 1), Point(2, 2))]
assert intersection(r1, Ray(Point(1, 1), Point(-1, -1))) == [Point(1, 1)]
assert intersection(r1, Segment(Point(0, 0), Point(
2, 2))) == [Segment(Point(1, 1), Point(2, 2))]
assert r4.intersection(s2) == [s2]
assert r4.intersection(Segment(Point(2, 3), Point(3, 4))) == []
assert r4.intersection(Segment(Point(-1, -1), Point(
0.5, 0.5))) == [Segment(p1, Point(0.5, 0.5))]
assert r4.intersection(Ray(p2, p1)) == [s1]
assert Ray(p2, p1).intersection(r6) == []
assert r4.intersection(r7) == r7.intersection(r4) == [r7]
assert Ray3D((0, 0), (3, 0)).intersection(Ray3D(
(1, 0), (3, 0))) == [Ray3D((1, 0), (3, 0))]
assert Ray3D((1, 0), (3, 0)).intersection(Ray3D(
(0, 0), (3, 0))) == [Ray3D((1, 0), (3, 0))]
assert Ray(Point(0, 0), Point(0, 4)).intersection(Ray(Point(0, 1), Point(0, -1))) == \
[Segment(Point(0, 0), Point(0, 1))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(1, 0), (2, 0))) == [Segment3D((1, 0), (2, 0))]
assert Segment3D((1, 0), (2, 0)).intersection(Segment3D(
(0, 0), (3, 0))) == [Segment3D((1, 0), (2, 0))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(3, 0), (4, 0))) == [Point3D((3, 0))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(2, 0), (5, 0))) == [Segment3D((3, 0), (2, 0))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(-2, 0), (1, 0))) == [Segment3D((0, 0), (1, 0))]
assert Segment3D((0, 0), (3, 0)).intersection(Segment3D(
(-2, 0), (0, 0))) == [Point3D(0, 0)]
assert s1.intersection(Segment(Point(1, 1), Point(2, 2))) == [Point(1, 1)]
assert s1.intersection(Segment(Point(0.5, 0.5), Point(
1.5, 1.5))) == [Segment(Point(0.5, 0.5), p2)]
assert s1.intersection(Segment(Point(4, 4), Point(5, 5))) == []
assert s1.intersection(Segment(Point(-1, -1), p1)) == [p1]
assert s1.intersection(Segment(Point(-1, -1), Point(
0.5, 0.5))) == [Segment(p1, Point(0.5, 0.5))]
assert s1.intersection(Line(Point(1, 0), Point(2, 1))) == []
assert s1.intersection(s2) == [s2]
assert s2.intersection(s1) == [s2]
def test_contains():
p1 = Point(0, 0)
r = Ray(p1, Point(4, 4))
r1 = Ray3D(p1, Point3D(0, 0, -1))
r2 = Ray3D(p1, Point3D(0, 1, 0))
r3 = Ray3D(p1, Point3D(0, 0, 1))
l = Line(Point(0, 1), Point(3, 4))
# Segment contains
assert Point(0, (a + b) / 2) in Segment((0, a), (0, b))
assert Point((a + b) / 2, 0) in Segment((a, 0), (b, 0))
assert Point3D(0, 1, 0) in Segment3D((0, 1, 0), (0, 1, 0))
assert Point3D(1, 0, 0) in Segment3D((1, 0, 0), (1, 0, 0))
assert Segment3D(Point3D(0, 0, 0), Point3D(1, 0, 0)).contains([]) is True
assert Segment3D(Point3D(0, 0, 0), Point3D(1, 0, 0)).contains(
Segment3D(Point3D(2, 2, 2), Point3D(3, 2, 2))) is False
# Line contains
assert l.contains(Point(0, 1)) is True
assert l.contains((0, 1)) is True
assert l.contains((0, 0)) is False
# Ray contains
assert r.contains(p1) is True
assert r.contains((1, 1)) is True
assert r.contains((1, 3)) is False
assert r.contains(Segment((1, 1), (2, 2))) is True
assert r.contains(Segment((1, 2), (2, 5))) is False
assert r.contains(Ray((2, 2), (3, 3))) is True
assert r.contains(Ray((2, 2), (3, 5))) is False
assert r1.contains(Segment3D(p1, Point3D(0, 0, -10))) is True
assert r1.contains(Segment3D(Point3D(1, 1, 1), Point3D(2, 2, 2))) is False
assert r2.contains(Point3D(0, 0, 0)) is True
assert r3.contains(Point3D(0, 0, 0)) is True
assert Ray3D(Point3D(1, 1, 1), Point3D(1, 0, 0)).contains([]) is False
assert Line3D((0, 0, 0), (x, y, z)).contains((2 * x, 2 * y, 2 * z))
with warns(UserWarning):
assert Line3D(p1, Point3D(0, 1, 0)).contains(Point(1.0, 1.0)) is False
with warns(UserWarning):
assert r3.contains(Point(1.0, 1.0)) is False
def test_intersection_3d():
p1 = Point3D(0, 0, 0)
p2 = Point3D(1, 1, 1)
l1 = Line3D(p1, p2)
l2 = Line3D(Point3D(0, 0, 0), Point3D(3, 4, 0))
r1 = Ray3D(Point3D(1, 1, 1), Point3D(2, 2, 2))
r2 = Ray3D(Point3D(0, 0, 0), Point3D(3, 4, 0))
s1 = Segment3D(Point3D(0, 0, 0), Point3D(3, 4, 0))
assert intersection(l1, p1) == [p1]
assert intersection(l1, Point3D(x1, 1 + x1, 1)) == []
assert intersection(l1, l1.parallel_line(p1)) == [
Line3D(Point3D(0, 0, 0), Point3D(1, 1, 1))
]
assert intersection(l2, r2) == [r2]
assert intersection(l2, s1) == [s1]
assert intersection(r2, l2) == [r2]
assert intersection(r1, Ray3D(Point3D(1, 1, 1),
Point3D(-1, -1, -1))) == [Point3D(1, 1, 1)]
assert intersection(r1, Segment3D(Point3D(0, 0, 0), Point3D(
2, 2, 2))) == [Segment3D(Point3D(1, 1, 1), Point3D(2, 2, 2))]
assert intersection(Ray3D(Point3D(1, 0, 0), Point3D(-1, 0, 0)), Ray3D(Point3D(0, 1, 0), Point3D(0, -1, 0))) \
== [Point3D(0, 0, 0)]
assert intersection(r1, Ray3D(Point3D(2, 2, 2), Point3D(0, 0, 0))) == \
[Segment3D(Point3D(1, 1, 1), Point3D(2, 2, 2))]
assert intersection(s1, r2) == [s1]
assert Line3D(Point3D(4, 0, 1), Point3D(0, 4, 1)).intersection(Line3D(Point3D(0, 0, 1), Point3D(4, 4, 1))) == \
[Point3D(2, 2, 1)]
assert Line3D((0, 1, 2),
(0, 2, 3)).intersection(Line3D(
(0, 1, 2), (0, 1, 1))) == [Point3D(0, 1, 2)]
assert Line3D((0, 0), (t, t)).intersection(Line3D((0, 1), (t, t))) == \
[Point3D(t, t)]
assert Ray3D(Point3D(0, 0, 0), Point3D(0, 4, 0)).intersection(
Ray3D(Point3D(0, 1, 1), Point3D(0, -1, 1))) == []
def test_point3D():
x = Symbol('x', real=True)
y = Symbol('y', real=True)
x1 = Symbol('x1', real=True)
x2 = Symbol('x2', real=True)
x3 = Symbol('x3', real=True)
y1 = Symbol('y1', real=True)
y2 = Symbol('y2', real=True)
y3 = Symbol('y3', real=True)
half = Rational(1, 2)
p1 = Point3D(x1, x2, x3)
p2 = Point3D(y1, y2, y3)
p3 = Point3D(0, 0, 0)
p4 = Point3D(1, 1, 1)
p5 = Point3D(0, 1, 2)
assert p1 in p1
assert p1 not in p2
assert p2.y == y2
assert (p3 + p4) == p4
assert (p2 - p1) == Point3D(y1 - x1, y2 - x2, y3 - x3)
assert p4*5 == Point3D(5, 5, 5)
assert -p2 == Point3D(-y1, -y2, -y3)
assert Point(34.05, sqrt(3)) == Point(Rational(681, 20), sqrt(3))
assert Point3D.midpoint(p3, p4) == Point3D(half, half, half)
assert Point3D.midpoint(p1, p4) == Point3D(half + half*x1, half + half*x2,
half + half*x3)
assert Point3D.midpoint(p2, p2) == p2
assert p2.midpoint(p2) == p2
assert Point3D.distance(p3, p4) == sqrt(3)
assert Point3D.distance(p1, p1) == 0
assert Point3D.distance(p3, p2) == sqrt(p2.x**2 + p2.y**2 + p2.z**2)
p1_1 = Point3D(x1, x1, x1)
p1_2 = Point3D(y2, y2, y2)
p1_3 = Point3D(x1 + 1, x1, x1)
Point3D.are_collinear(p3)
assert Point3D.are_collinear(p3, p4)
assert Point3D.are_collinear(p3, p4, p1_1, p1_2)
assert Point3D.are_collinear(p3, p4, p1_1, p1_3) is False
assert Point3D.are_collinear(p3, p3, p4, p5) is False
assert p3.intersection(Point3D(0, 0, 0)) == [p3]
assert p3.intersection(p4) == []
assert p4 * 5 == Point3D(5, 5, 5)
assert p4 / 5 == Point3D(0.2, 0.2, 0.2)
raises(ValueError, lambda: Point3D(0, 0, 0) + 10)
# Point differences should be simplified
assert Point3D(x*(x - 1), y, 2) - Point3D(x**2 - x, y + 1, 1) == \
Point3D(0, -1, 1)
a, b = Rational(1, 2), Rational(1, 3)
assert Point(a, b).evalf(2) == \
Point(a.n(2), b.n(2))
raises(ValueError, lambda: Point(1, 2) + 1)
# test transformations
p = Point3D(1, 1, 1)
assert p.scale(2, 3) == Point3D(2, 3, 1)
assert p.translate(1, 2) == Point3D(2, 3, 1)
assert p.translate(1) == Point3D(2, 1, 1)
assert p.translate(z=1) == Point3D(1, 1, 2)
assert p.translate(*p.args) == Point3D(2, 2, 2)
# Test __new__
assert Point3D(0.1, 0.2, evaluate=False, on_morph='ignore').args[0].is_Float
# Test length property returns correctly
assert p.length == 0
assert p1_1.length == 0
assert p1_2.length == 0
# Test are_colinear type error
raises(TypeError, lambda: Point3D.are_collinear(p, x))
# Test are_coplanar
assert Point.are_coplanar()
assert Point.are_coplanar((1, 2, 0), (1, 2, 0), (1, 3, 0))
assert Point.are_coplanar((1, 2, 0), (1, 2, 3))
with warnings.catch_warnings(record=True) as w:
raises(ValueError, lambda: Point2D.are_coplanar((1, 2), (1, 2, 3)))
assert Point3D.are_coplanar((1, 2, 0), (1, 2, 3))
assert Point.are_coplanar((0, 0, 0), (1, 1, 0), (1, 1, 1), (1, 2, 1)) is False
planar2 = Point3D(1, -1, 1)
planar3 = Point3D(-1, 1, 1)
assert Point3D.are_coplanar(p, planar2, planar3) == True
assert Point3D.are_coplanar(p, planar2, planar3, p3) == False
assert Point.are_coplanar(p, planar2)
planar2 = Point3D(1, 1, 2)
planar3 = Point3D(1, 1, 3)
assert Point3D.are_coplanar(p, planar2, planar3) # line, not plane
plane = Plane((1, 2, 1), (2, 1, 0), (3, 1, 2))
assert Point.are_coplanar(*[plane.projection(((-1)**i, i)) for i in range(4)])
# all 2D points are coplanar
assert Point.are_coplanar(Point(x, y), Point(x, x + y), Point(y, x + 2)) is True
# Test Intersection
assert planar2.intersection(Line3D(p, planar3)) == [Point3D(1, 1, 2)]
# Test Scale
assert planar2.scale(1, 1, 1) == planar2
assert planar2.scale(2, 2, 2, planar3) == Point3D(1, 1, 1)
assert planar2.scale(1, 1, 1, p3) == planar2
# Test Transform
identity = Matrix([[1, 0, 0, 0], [0, 1, 0, 0], [0, 0, 1, 0], [0, 0, 0, 1]])
assert p.transform(identity) == p
trans = Matrix([[1, 0, 0, 1], [0, 1, 0, 1], [0, 0, 1, 1], [0, 0, 0, 1]])
assert p.transform(trans) == Point3D(2, 2, 2)
raises(ValueError, lambda: p.transform(p))
raises(ValueError, lambda: p.transform(Matrix([[1, 0], [0, 1]])))
# Test Equals
assert p.equals(x1) == False
# Test __sub__
p_4d = Point(0, 0, 0, 1)
with warnings.catch_warnings(record=True) as w:
assert p - p_4d == Point(1, 1, 1, -1)
assert len(w) == 1
p_4d3d = Point(0, 0, 1, 0)
with warnings.catch_warnings(record=True) as w:
assert p - p_4d3d == Point(1, 1, 0, 0)
assert len(w) == 1
def test_is_parallel():
p1 = Point3D(0, 0, 0)
p2 = Point3D(1, 1, 1)
p3 = Point3D(x1, x1, x1)
l2 = Line(Point(x1, x1), Point(y1, y1))
l2_1 = Line(Point(x1, x1), Point(x1, 1 + x1))
assert Line.is_parallel(Line(Point(0, 0), Point(1, 1)), l2)
assert Line.is_parallel(l2, Line(Point(x1, x1), Point(x1,
1 + x1))) is False
assert Line.is_parallel(l2, l2.parallel_line(Point(-x1, x1)))
assert Line.is_parallel(l2_1, l2_1.parallel_line(Point(0, 0)))
assert Line3D(p1, p2).is_parallel(Line3D(p1, p2)) # same as in 2D
assert Line3D(Point3D(4, 0, 1), Point3D(0, 4, 1)).is_parallel(
Line3D(Point3D(0, 0, 1), Point3D(4, 4, 1))) is False
assert Line3D(p1, p2).parallel_line(p3) == Line3D(
Point3D(x1, x1, x1), Point3D(x1 + 1, x1 + 1, x1 + 1))
assert Line3D(p1, p2).parallel_line(p3.args) == \
Line3D(Point3D(x1, x1, x1), Point3D(x1 + 1, x1 + 1, x1 + 1))
assert Line3D(Point3D(4, 0, 1), Point3D(0, 4, 1)).is_parallel(
Line3D(Point3D(0, 0, 1), Point3D(4, 4, 1))) is False
def test_issue_9214():
p1 = Point3D(4, -2, 6)
p2 = Point3D(1, 2, 3)
p3 = Point3D(7, 2, 3)
assert Point3D.are_collinear(p1, p2, p3) is False
def test_point3D():
p1 = Point3D(x1, x2, x3)
p2 = Point3D(y1, y2, y3)
p3 = Point3D(0, 0, 0)
p4 = Point3D(1, 1, 1)
p5 = Point3D(0, 1, 2)
assert p1 in p1
assert p1 not in p2
assert p2.y == y2
assert (p3 + p4) == p4
assert (p2 - p1) == Point3D(y1 - x1, y2 - x2, y3 - x3)
assert p4 * 5 == Point3D(5, 5, 5)
assert -p2 == Point3D(-y1, -y2, -y3)
assert Point(34.05, sqrt(3)) == Point(Rational(681, 20), sqrt(3))
assert Point3D.midpoint(p3, p4) == Point3D(half, half, half)
assert Point3D.midpoint(p1,
p4) == Point3D(half + half * x1, half + half * x2,
half + half * x3)
assert Point3D.midpoint(p2, p2) == p2
assert p2.midpoint(p2) == p2
assert Point3D.distance(p3, p4) == sqrt(3)
assert Point3D.distance(p1, p1) == 0
assert Point3D.distance(p3, p2) == sqrt(p2.x**2 + p2.y**2 + p2.z**2)
p1_1 = Point3D(x1, x1, x1)
p1_2 = Point3D(y2, y2, y2)
p1_3 = Point3D(x1 + 1, x1, x1)
# according to the description in the docs, points are collinear
# if they like on a single line. Thus a single point should always
# be collinear
assert Point3D.are_collinear(p3)
assert Point3D.are_collinear(p3, p4)
assert Point3D.are_collinear(p3, p4, p1_1, p1_2)
assert Point3D.are_collinear(p3, p4, p1_1, p1_3) is False
assert Point3D.are_collinear(p3, p3, p4, p5) is False
assert p3.intersection(Point3D(0, 0, 0)) == [p3]
assert p3.intersection(p4) == []
assert p4 * 5 == Point3D(5, 5, 5)
assert p4 / 5 == Point3D(0.2, 0.2, 0.2)
raises(ValueError, lambda: Point3D(0, 0, 0) + 10)
# Point differences should be simplified
assert Point3D(x*(x - 1), y, 2) - Point3D(x**2 - x, y + 1, 1) == \
Point3D(0, -1, 1)
a, b = Rational(1, 2), Rational(1, 3)
assert Point(a, b).evalf(2) == \
Point(a.n(2), b.n(2))
raises(ValueError, lambda: Point(1, 2) + 1)
# test transformations
p = Point3D(1, 1, 1)
assert p.scale(2, 3) == Point3D(2, 3, 1)
assert p.translate(1, 2) == Point3D(2, 3, 1)
assert p.translate(1) == Point3D(2, 1, 1)
assert p.translate(z=1) == Point3D(1, 1, 2)
assert p.translate(*p.args) == Point3D(2, 2, 2)
# Test __new__
assert Point3D(Point3D(1, 2, 3), 4, 5, evaluate=False) == Point3D(1, 2, 3)
# Test length property returns correctly
assert p.length == 0
assert p1_1.length == 0
assert p1_2.length == 0
# Test are_colinear type error
raises(TypeError, lambda: Point3D.are_collinear(p, x))
# Test are_coplanar
planar2 = Point3D(1, -1, 1)
planar3 = Point3D(-1, 1, 1)
assert Point3D.are_coplanar(p, planar2, planar3) == True
assert Point3D.are_coplanar(p, planar2, planar3, p3) == False
raises(ValueError, lambda: Point3D.are_coplanar(p, planar2))
planar2 = Point3D(1, 1, 2)
planar3 = Point3D(1, 1, 3)
raises(ValueError, lambda: Point3D.are_coplanar(p, planar2, planar3))
# Test Intersection
assert planar2.intersection(Line3D(p, planar3)) == [Point3D(1, 1, 2)]
# Test Scale
assert planar2.scale(1, 1, 1) == planar2
assert planar2.scale(2, 2, 2, planar3) == Point3D(1, 1, 1)
assert planar2.scale(1, 1, 1, p3) == planar2
# Test Transform
identity = Matrix([[1, 0, 0, 0], [0, 1, 0, 0], [0, 0, 1, 0], [0, 0, 0, 1]])
assert p.transform(identity) == p
trans = Matrix([[1, 0, 0, 1], [0, 1, 0, 1], [0, 0, 1, 1], [0, 0, 0, 1]])
assert p.transform(trans) == Point3D(2, 2, 2)
raises(ValueError, lambda: p.transform(p))
raises(ValueError, lambda: p.transform(Matrix([[1, 0], [0, 1]])))
# Test Equals
assert p.equals(x1) == False
# Test __sub__
p_2d = Point(0, 0)
raises(ValueError, lambda: (p - p_2d))