def test_add_link(self):
'''Tests add_link method.'''
dna1 = _read('sbol.xml')
dna2 = _read('sbol2.xml')
ice_entry1 = ICEEntry(typ='PLASMID', dna=dna1)
self.__ice_client.set_ice_entry(ice_entry1)
ice_entry2 = ICEEntry(typ='PLASMID', dna=dna2)
self.__ice_client.set_ice_entry(ice_entry2)
self.__ice_client.add_link(
ice_entry1.get_ice_number(), ice_entry2.get_ice_number())
# "Refresh" (update metadata)
ice_entry1 = self.__ice_client.get_ice_entry(ice_entry1.get_ice_id())
ice_entry2 = self.__ice_client.get_ice_entry(ice_entry2.get_ice_id())
self.assertTrue(ice_entry1.get_ice_number() in
[par['id']
for par in ice_entry2.get_metadata()['parents']])
self.assertTrue(ice_entry2.get_ice_number() in
[link['id']
for link in ice_entry1.get_metadata()['linkedParts']])
def test_get_ice_number(self):
'''Tests get_ice_number method.'''
ice_entry1 = ICEEntry(typ='PLASMID')
self.__ice_client.set_ice_entry(ice_entry1)
self.assertNotEqual(ice_entry1.get_ice_number(), None)
ice_entry2 = ICEEntry(metadata={'type': 'PLASMID'})
self.__ice_client.set_ice_entry(ice_entry2)
self.assertNotEqual(ice_entry2.get_ice_number(), None)
def test_get_ice_number(self):
'''Tests get_ice_number method.'''
ice_entry1 = ICEEntry(typ='PLASMID')
self.__ice_client.set_ice_entry(ice_entry1)
self.assertNotEqual(ice_entry1.get_ice_number(), None)
ice_entry2 = ICEEntry(metadata={'type': 'PLASMID'})
self.__ice_client.set_ice_entry(ice_entry2)
self.assertNotEqual(ice_entry2.get_ice_number(), None)
def test_get_ice_entry(self):
'''Tests get_ice_entry method.'''
dna = _read('sbol.xml')
ice_entry_in = ICEEntry(typ='PART', dna=dna)
self.__ice_client.set_ice_entry(ice_entry_in)
ice_entry_out = self.__ice_client.get_ice_entry(
ice_entry_in.get_ice_number())
self.assertEqual(ice_entry_out.get_seq(), dna['seq'])
def test_get_ice_entry(self):
'''Tests get_ice_entry method.'''
dna = _read('sbol.xml')
ice_entry_in = ICEEntry(typ='PART', dna=dna)
self.__ice_client.set_ice_entry(ice_entry_in)
ice_entry_out = self.__ice_client.get_ice_entry(
ice_entry_in.get_ice_number())
self.assertEqual(ice_entry_out.get_seq(), dna['seq'])
def test_set_ice_entry(self):
'''Tests set_ice_entry method.'''
dna_in = _read('sbol.xml')
ice_entry_in = ICEEntry(typ='PLASMID', dna=dna_in)
self.__ice_client.set_ice_entry(ice_entry_in)
ice_entry_out = self.__ice_client.get_ice_entry(
ice_entry_in.get_ice_number())
self.assertNotEqual(ice_entry_out, None)
def test_set_ice_entry(self):
'''Tests set_ice_entry method.'''
dna_in = _read('sbol.xml')
ice_entry_in = ICEEntry(typ='PLASMID', dna=dna_in)
self.__ice_client.set_ice_entry(ice_entry_in)
ice_entry_out = self.__ice_client.get_ice_entry(
ice_entry_in.get_ice_number())
self.assertNotEqual(ice_entry_out, None)
def test_set_value(self):
'''Tests set_value method.'''
ice_entry1 = ICEEntry(typ='PLASMID')
ice_entry1.set_value('creator', 'God')
self.assertEqual(ice_entry1.get_metadata()['type'], 'PLASMID')
self.assertEqual(ice_entry1.get_metadata()['creator'], 'God')
self.__ice_client.set_ice_entry(ice_entry1)
ice_entry2 = self.__ice_client.get_ice_entry(
ice_entry1.get_ice_number())
ice_entry2.set_value('creator', 'Aitor Karanka')
self.__ice_client.set_ice_entry(ice_entry2)
ice_entry3 = self.__ice_client.get_ice_entry(
ice_entry1.get_ice_number())
self.assertEqual(ice_entry3.get_metadata()['creator'], 'Aitor Karanka')
ice_entry4 = ICEEntry(metadata={'type': 'PLASMID'})
ice_entry4.set_value('creator', 'God')
self.assertEqual(ice_entry4.get_metadata()['type'], 'PLASMID')
self.assertEqual(ice_entry4.get_metadata()['creator'], 'God')
def test_set_value(self):
'''Tests set_value method.'''
ice_entry1 = ICEEntry(typ='PLASMID')
ice_entry1.set_value('creator', 'God')
self.assertEqual(ice_entry1.get_metadata()['type'], 'PLASMID')
self.assertEqual(ice_entry1.get_metadata()['creator'], 'God')
self.__ice_client.set_ice_entry(ice_entry1)
ice_entry2 = self.__ice_client.get_ice_entry(
ice_entry1.get_ice_number())
ice_entry2.set_value('creator', 'Aitor Karanka')
self.__ice_client.set_ice_entry(ice_entry2)
ice_entry3 = self.__ice_client.get_ice_entry(
ice_entry1.get_ice_number())
self.assertEqual(ice_entry3.get_metadata()['creator'], 'Aitor Karanka')
ice_entry4 = ICEEntry(metadata={'type': 'PLASMID'})
ice_entry4.set_value('creator', 'God')
self.assertEqual(ice_entry4.get_metadata()['type'], 'PLASMID')
self.assertEqual(ice_entry4.get_metadata()['creator'], 'God')
def test_add_link(self):
'''Tests add_link method.'''
dna1 = _read('sbol.xml')
dna2 = _read('sbol2.xml')
ice_entry1 = ICEEntry(typ='PLASMID', dna=dna1)
self.__ice_client.set_ice_entry(ice_entry1)
ice_entry2 = ICEEntry(typ='PLASMID', dna=dna2)
self.__ice_client.set_ice_entry(ice_entry2)
self.__ice_client.add_link(ice_entry1.get_ice_number(),
ice_entry2.get_ice_number())
# "Refresh" (update metadata)
ice_entry1 = self.__ice_client.get_ice_entry(ice_entry1.get_ice_id())
ice_entry2 = self.__ice_client.get_ice_entry(ice_entry2.get_ice_id())
self.assertTrue(ice_entry1.get_ice_number(
) in [par['id'] for par in ice_entry2.get_metadata()['parents']])
self.assertTrue(ice_entry2.get_ice_number(
) in [link['id'] for link in ice_entry1.get_metadata()['linkedParts']])
