def test_instrument(self):
group = Group(name="Test Manager Group")
group.save()
facility = Facility(name="Test Facility", manager_group=group)
facility.save()
self.assertEqual(str(facility), "Test Facility")
instrument = Instrument(name="Test Instrument", facility=facility)
instrument.save()
self.assertEqual(str(instrument), "Test Instrument")
self.assertEqual(len(instrument.getParameterSets()), 0)
schema = Schema(namespace='test instrument schema namespace',
type=Schema.INSTRUMENT)
schema.save()
parname = ParameterName(schema=schema,
name='name',
full_name='full_name')
parname.save()
pset = InstrumentParameterSet.objects.create(instrument=instrument,
schema=schema)
pset.save()
self.assertEqual(len(instrument.getParameterSets()), 1)
class MyTardisResourceTestCase(ResourceTestCase):
'''
abstract class without tests to combine common settings in one place
'''
def setUp(self):
super(MyTardisResourceTestCase, self).setUp()
self.username = '******'
self.password = '******'
self.user = User.objects.create_user(username=self.username,
password=self.password)
test_auth_service = AuthService()
test_auth_service._set_user_from_dict(
self.user,
user_dict={'first_name': 'Testing',
'last_name': 'MyTardis API',
'email': '*****@*****.**'},
auth_method="None")
self.user_profile = UserProfile(user=self.user).save()
self.testgroup = Group(name="Test Group")
self.testgroup.save()
self.testgroup.user_set.add(self.user)
self.testfacility = Facility(name="Test Facility",
manager_group=self.testgroup)
self.testfacility.save()
self.testinstrument = Instrument(name="Test Instrument",
facility=self.testfacility)
self.testinstrument.save()
def get_credentials(self):
return self.create_basic(username=self.username,
password=self.password)
def get_apikey_credentials(self):
return self.create_apikey(username=self.username,
api_key=self.user.api_key.key)
class MyTardisResourceTestCase(ResourceTestCase):
'''
abstract class without tests to combine common settings in one place
'''
def setUp(self):
super(MyTardisResourceTestCase, self).setUp()
self.username = '******'
self.password = '******'
self.user = User.objects.create_user(username=self.username,
password=self.password)
test_auth_service = AuthService()
test_auth_service._set_user_from_dict(
self.user,
user_dict={'first_name': 'Testing',
'last_name': 'MyTardis API',
'email': '*****@*****.**'},
auth_method="None")
self.testgroup = Group(name="Test Group")
self.testgroup.save()
self.testgroup.user_set.add(self.user)
self.testfacility = Facility(name="Test Facility",
manager_group=self.testgroup)
self.testfacility.save()
self.testinstrument = Instrument(name="Test Instrument",
facility=self.testfacility)
self.testinstrument.save()
def get_credentials(self):
return self.create_basic(username=self.username,
password=self.password)
def get_apikey_credentials(self):
return self.create_apikey(username=self.username,
api_key=self.user.api_key.key)
def setUp(self):
"""Setup test fixtures if needed."""
self.user = User.objects.create_user("doctor", '', "pwd")
self.exp = Experiment(title="Wonderful",
institution_name="Monash University",
created_by=self.user)
self.exp.save()
group = Group(name="Group1")
group.save()
facility = Facility(name="Test Facility", manager_group=group)
facility.save()
self.inst = Instrument(name="Test Instrument1", facility=facility)
self.inst.save()
self.dataset = Dataset(description="Dataset1", instrument=self.inst)
self.dataset.save()
storage_classes = getattr(settings, "HSM_STORAGE_CLASSES",
DEFAULT_HSM_CLASSES)
self.sbox1 = StorageBox(name="SBOX1",
django_storage_class=storage_classes[0],
status='online',
max_size=256)
self.sbox1.save()
sbox1_attr = StorageBoxAttribute(storage_box=self.sbox1,
key='type',
value=StorageBox.DISK)
sbox1_attr.save()
sbox1_loc_opt = StorageBoxOption(storage_box=self.sbox1,
key="location",
value="/dummy/path")
sbox1_loc_opt.save()
self.sbox2 = StorageBox(
name="SBOX2",
django_storage_class="any.non.disk.StorageSystem",
status='offline',
max_size=256)
self.sbox2.save()
sbox2_attr = StorageBoxAttribute(storage_box=self.sbox2,
key='type',
value=StorageBox.TAPE)
sbox2_attr.save()
self.df1 = DataFile(dataset=self.dataset, filename="test_df.jpg")
self.df1.save()
self.dfo1 = DataFileObject(datafile=self.df1,
storage_box=self.sbox1,
uri="stream/test.jpg",
verified=True)
self.dfo1.save()
self.df1.verify()
def setUp(self):
super(MyTardisResourceTestCase, self).setUp()
self.username = '******'
self.password = '******'
self.user = User.objects.create_user(username=self.username,
password=self.password)
test_auth_service = AuthService()
test_auth_service._set_user_from_dict(
self.user,
user_dict={'first_name': 'Testing',
'last_name': 'MyTardis API',
'email': '*****@*****.**'},
auth_method="None")
self.testgroup = Group(name="Test Group")
self.testgroup.save()
self.testgroup.user_set.add(self.user)
self.testfacility = Facility(name="Test Facility",
manager_group=self.testgroup)
self.testfacility.save()
self.testinstrument = Instrument(name="Test Instrument",
facility=self.testfacility)
self.testinstrument.save()
def test_dataset(self):
exp = Experiment(title='test exp1',
institution_name='monash',
created_by=self.user)
exp.save()
exp2 = Experiment(title='test exp2',
institution_name='monash',
created_by=self.user)
exp2.save()
group = Group(name="Test Manager Group")
group.save()
group.user_set.add(self.user)
facility = Facility(name="Test Facility", manager_group=group)
facility.save()
instrument = Instrument(name="Test Instrument", facility=facility)
instrument.save()
dataset = Dataset(description='test dataset1')
dataset.instrument = instrument
dataset.save()
dataset.experiments.set([exp, exp2])
dataset.save()
dataset_id = dataset.id
del dataset
dataset = Dataset.objects.get(pk=dataset_id)
self.assertEqual(dataset.description, 'test dataset1')
self.assertEqual(dataset.experiments.count(), 2)
self.assertIn(exp, list(dataset.experiments.iterator()))
self.assertIn(exp2, list(dataset.experiments.iterator()))
self.assertEqual(instrument, dataset.instrument)
target_id = Dataset.objects.first().id
self.assertEqual(
dataset.get_absolute_url(), '/dataset/%d' % target_id,
dataset.get_absolute_url() + ' != /dataset/%d' % target_id)
def setUp(self):
super(MyTardisResourceTestCase, self).setUp()
self.username = '******'
self.password = '******'
self.user = User.objects.create_user(username=self.username,
password=self.password)
test_auth_service = AuthService()
test_auth_service._set_user_from_dict(
self.user,
user_dict={'first_name': 'Testing',
'last_name': 'MyTardis API',
'email': '*****@*****.**'},
auth_method="None")
self.user_profile = UserProfile(user=self.user).save()
self.testgroup = Group(name="Test Group")
self.testgroup.save()
self.testgroup.user_set.add(self.user)
self.testfacility = Facility(name="Test Facility",
manager_group=self.testgroup)
self.testfacility.save()
self.testinstrument = Instrument(name="Test Instrument",
facility=self.testfacility)
self.testinstrument.save()