def testBucketBySeqLength(self):
def example_len(ex):
return tf.shape(ex["inputs"])[0]
boundaries = [10, 20, 30]
batch_sizes = [10, 8, 4, 2]
window_size = 40
dataset = data_reader.read_examples(
self.problem,
self.filepatterns[0],
32,
mode=tf.contrib.learn.ModeKeys.EVAL)
dataset = data_reader.bucket_by_sequence_length(
dataset, example_len,
boundaries, batch_sizes, window_size)
batch = dataset.make_one_shot_iterator().get_next()
input_vals = []
obs_batch_sizes = []
with tf.train.MonitoredSession() as sess:
# Until OutOfRangeError
while True:
batch_val = sess.run(batch)
batch_inputs = batch_val["inputs"]
batch_size, max_len = batch_inputs.shape
obs_batch_sizes.append(batch_size)
for inputs in batch_inputs:
input_val = inputs[0]
input_vals.append(input_val)
# The inputs were constructed such that they were repeated value+1
# times (i.e. if the inputs value is 7, the example has 7 repeated 8
# times).
repeat = input_val + 1
# Check padding
self.assertAllEqual(
[input_val] * repeat + [0] * (max_len - repeat),
inputs)
# Check that all inputs came through
self.assertEqual(list(range(30)), sorted(input_vals))
# Check that we saw variable batch size
self.assertTrue(len(set(obs_batch_sizes)) > 1)
def testBucketBySeqLength(self):
def example_len(ex):
return tf.shape(ex["inputs"])[0]
boundaries = [10, 20, 30]
batch_sizes = [10, 8, 4, 2]
dataset = self.problem.dataset(
tf.estimator.ModeKeys.TRAIN,
data_dir=self.data_dir,
shuffle_files=False)
dataset = data_reader.bucket_by_sequence_length(
dataset, example_len, boundaries, batch_sizes)
batch = dataset.make_one_shot_iterator().get_next()
input_vals = []
obs_batch_sizes = []
with tf.train.MonitoredSession() as sess:
# Until OutOfRangeError
while True:
batch_val = sess.run(batch)
batch_inputs = batch_val["inputs"]
batch_size, max_len = batch_inputs.shape
obs_batch_sizes.append(batch_size)
for inputs in batch_inputs:
input_val = inputs[0]
input_vals.append(input_val)
# The inputs were constructed such that they were repeated value+1
# times (i.e. if the inputs value is 7, the example has 7 repeated 8
# times).
repeat = input_val + 1
# Check padding
self.assertAllEqual([input_val] * repeat + [0] * (max_len - repeat),
inputs)
# Check that all inputs came through
self.assertEqual(list(range(30)), sorted(input_vals))
# Check that we saw variable batch size
self.assertTrue(len(set(obs_batch_sizes)) > 1)
def input_fn(self, # noqa: C901
mode,
hparams,
data_dir=None,
params=None,
config=None,
dataset_kwargs=None):
"""Builds input pipeline for problem.
Args:
mode: tf.estimator.ModeKeys
hparams: HParams, model hparams
data_dir: str, data directory; if None, will use hparams.data_dir
params: dict, may include "batch_size"
config: RunConfig; should have the data_parallelism attribute if not using
TPU
dataset_kwargs: dict, if passed, will pass as kwargs to self.dataset
method when called
Returns:
(features_dict<str name, Tensor feature>, Tensor targets)
"""
partition_id, num_partitions = self._dataset_partition(mode, config)
is_training = mode == tf.estimator.ModeKeys.TRAIN
if config and config.use_tpu:
num_threads = 64
else:
num_threads = 4 if is_training else 1
max_length = self.max_length(hparams)
def tpu_valid_size(example):
return data_reader.example_valid_size(
example,
hparams.min_length,
max_length
)
def gpu_valid_size(example):
drop_long_sequences = is_training or hparams.eval_drop_long_sequences
return data_reader.example_valid_size(
example,
hparams.min_length,
max_length
if drop_long_sequences else 10**9
)
def define_shapes(example):
batch_size = config and config.use_tpu and params["batch_size"]
return standardize_shapes(example, batch_size=batch_size)
# Read and preprocess
data_dir = data_dir or hparams.data_dir
dataset_kwargs = dataset_kwargs or {}
dataset_kwargs.update({
"mode": mode,
"data_dir": data_dir,
"num_threads": num_threads,
"hparams": hparams,
"partition_id": partition_id,
"num_partitions": num_partitions,
})
dataset = self.dataset(**dataset_kwargs)
if is_training:
# Repeat and skip a random number of records
dataset = dataset.repeat()
data_files = tf.contrib.slim.parallel_reader.get_data_files(
self.filepattern(data_dir, mode))
# In continuous_train_and_eval when switching between train and
# eval, this input_fn method gets called multiple times and it
# would give you the exact same samples from the last call
# (because the Graph seed is set). So this skip gives you some
# shuffling.
dataset = skip_random_fraction(dataset, data_files[0])
dataset = dataset.map(
data_reader.cast_int64_to_int32, num_parallel_calls=num_threads)
if self.batch_size_means_tokens:
batch_size_means_tokens = True
else:
if _are_shapes_fully_defined(dataset.output_shapes):
batch_size_means_tokens = False
else:
tf.logging.warning(
"Shapes are not fully defined. Assuming batch_size means tokens. "
"Override batch_size_means_tokens() "
"in your problem subclass if this is undesired behavior.")
batch_size_means_tokens = True
# Batching
if not batch_size_means_tokens:
# Batch size means examples per datashard.
if config and config.use_tpu:
# on TPU, we use params["batch_size"], which specifies the number of
# examples across all datashards
batch_size = params["batch_size"]
dataset = dataset.apply(
tf.contrib.data.batch_and_drop_remainder(batch_size))
else:
num_shards = (config and config.data_parallelism.n) or 1
batch_size = hparams.batch_size * num_shards
dataset = dataset.batch(batch_size)
else:
# batch_size means tokens per datashard
if config and config.use_tpu:
dataset = dataset.filter(tpu_valid_size)
padded_shapes = self._pad_for_tpu(dataset.output_shapes, hparams)
# on TPU, we use params["batch_size"], which specifies the number of
# examples across all datashards
batch_size = params["batch_size"]
dataset = dataset.apply(
tf.contrib.data.padded_batch_and_drop_remainder(
batch_size, padded_shapes))
else:
# On GPU, bucket by length
dataset = dataset.filter(gpu_valid_size)
batching_scheme = data_reader.hparams_to_batching_scheme(
hparams,
shard_multiplier=(config and config.data_parallelism.n) or 1,
length_multiplier=self.get_hparams().batch_size_multiplier)
if hparams.use_fixed_batch_size:
# Here batch_size really means examples per datashard.
batching_scheme["batch_sizes"] = [hparams.batch_size]
batching_scheme["boundaries"] = []
dataset = data_reader.bucket_by_sequence_length(
dataset, data_reader.example_length, batching_scheme["boundaries"],
batching_scheme["batch_sizes"])
if not is_training:
def _pad_batch(features):
if not config or config.data_parallelism.n <= 1:
return features
tf.logging.warn(
"Padding the batch to ensure that remainder eval batches have "
"a batch size divisible by the number of data shards. This may "
"lead to incorrect metrics for non-zero-padded features, e.g. "
"images. Use a single datashard (i.e. 1 GPU) in that case.")
return pad_batch(features, config.data_parallelism.n)
dataset = dataset.map(_pad_batch, num_parallel_calls=num_threads)
dataset = dataset.map(define_shapes, num_parallel_calls=num_threads)
dataset = dataset.prefetch(2)
features = dataset.make_one_shot_iterator().get_next()
if not config or not config.use_tpu:
_summarize_features(features, (config and config.data_parallelism.n) or 1)
if mode == tf.estimator.ModeKeys.PREDICT:
features["infer_targets"] = features["targets"]
features["targets"] = None
# This is because of a bug in the Estimator that short-circuits prediction
# if it doesn't see a QueueRunner. DummyQueueRunner implements the
# minimal expected interface but does nothing.
tf.add_to_collection(tf.GraphKeys.QUEUE_RUNNERS, data_reader.DummyQueueRunner())
return features, features["targets"]
def input_fn(self,
mode,
hparams,
data_dir=None,
params=None,
config=None,
dataset_kwargs=None):
"""Builds input pipeline for problem.
Args:
mode: tf.estimator.ModeKeys
hparams: HParams, model hparams
data_dir: str, data directory; if None, will use hparams.data_dir
params: dict, may include "batch_size"
config: RunConfig; should have the data_parallelism attribute if not using
TPU
dataset_kwargs: dict, if passed, will pass as kwargs to self.dataset
method when called
Returns:
(features_dict<str name, Tensor feature>, Tensor targets)
"""
is_training = mode == tf.estimator.ModeKeys.TRAIN
num_threads = 4 if is_training else 1
def tpu_valid_size(example):
return data_reader.example_valid_size(example, hparams.min_length,
hparams.max_length)
def gpu_valid_size(example):
drop_long_sequences = is_training or hparams.eval_drop_long_sequences
return data_reader.example_valid_size(
example, hparams.min_length,
hparams.max_length if drop_long_sequences else 10**9)
def define_shapes(example):
batch_size = config and config.use_tpu and params["batch_size"]
return standardize_shapes(example, batch_size=batch_size)
# Read and preprocess
data_dir = data_dir or hparams.data_dir
dataset_kwargs = dataset_kwargs or {}
dataset_kwargs.update({
"mode": mode,
"data_dir": data_dir,
"num_threads": num_threads,
"hparams": hparams
})
dataset = self.dataset(**dataset_kwargs)
dataset = dataset.map(data_reader.cast_int64_to_int32,
num_parallel_calls=num_threads)
if is_training:
dataset = dataset.repeat(None)
# Batching
if _are_shapes_fully_defined(dataset.output_shapes):
# Static shape features (e.g. images)
if config and config.use_tpu:
tpu_batch_size = params["batch_size"]
dataset = dataset.apply(
tf.contrib.data.batch_and_drop_remainder(tpu_batch_size))
else:
num_shards = (config and config.data_parallelism.n) or 1
dataset = dataset.batch(hparams.batch_size * num_shards)
else:
# Variable length features
if config and config.use_tpu:
# On TPU, pad to hparams.max_length
dataset = dataset.filter(tpu_valid_size)
padded_shapes = _fill_shape_nones(
dataset.output_shapes, none_filler=hparams.max_length)
dataset = dataset.apply(
tf.contrib.data.padded_batch_and_drop_remainder(
params["batch_size"], padded_shapes))
else:
# On GPU, bucket by length
dataset = dataset.filter(gpu_valid_size)
batching_scheme = data_reader.hparams_to_batching_scheme(
hparams,
shard_multiplier=(config and config.data_parallelism.n)
or 1,
length_multiplier=self.get_hparams().batch_size_multiplier)
if hparams.use_fixed_batch_size:
batching_scheme["batch_sizes"] = [hparams.batch_size]
batching_scheme["boundaries"] = []
dataset = data_reader.bucket_by_sequence_length(
dataset, data_reader.example_length,
batching_scheme["boundaries"],
batching_scheme["batch_sizes"])
dataset = dataset.map(define_shapes, num_parallel_calls=num_threads)
dataset = dataset.prefetch(1)
features = dataset.make_one_shot_iterator().get_next()
if not config or not config.use_tpu:
_summarize_features(features,
(config and config.data_parallelism.n) or 1)
if mode == tf.estimator.ModeKeys.PREDICT:
features["infer_targets"] = features["targets"]
features["targets"] = None
# This is because of a bug in the Estimator that short-circuits prediction
# if it doesn't see a QueueRunner. DummyQueueRunner implements the
# minimal expected interface but does nothing.
tf.add_to_collection(tf.GraphKeys.QUEUE_RUNNERS,
data_reader.DummyQueueRunner())
return features, features["targets"]
def input_fn(self,
mode,
hparams,
data_dir=None,
params=None,
config=None,
dataset_kwargs=None):
"""Builds input pipeline for problem.
Args:
mode: tf.estimator.ModeKeys
hparams: HParams, model hparams
data_dir: str, data directory; if None, will use hparams.data_dir
params: dict, may include "batch_size"
config: RunConfig; should have the data_parallelism attribute if not using
TPU
dataset_kwargs: dict, if passed, will pass as kwargs to self.dataset
method when called
Returns:
(features_dict<str name, Tensor feature>, Tensor targets)
"""
partition_id, num_partitions = self._dataset_partition(mode, config)
is_training = mode == tf.estimator.ModeKeys.TRAIN
if config and config.use_tpu:
num_threads = 64
else:
num_threads = 4 if is_training else 1
max_length = self.max_length(hparams)
def tpu_valid_size(example):
return data_reader.example_valid_size(example, hparams.min_length,
max_length)
def gpu_valid_size(example):
drop_long_sequences = is_training or hparams.eval_drop_long_sequences
return data_reader.example_valid_size(example, hparams.min_length,
max_length
if drop_long_sequences else 10**9)
def define_shapes(example):
batch_size = config and config.use_tpu and params["batch_size"]
return standardize_shapes(example, batch_size=batch_size)
# Read and preprocess
data_dir = data_dir or (hasattr(hparams, "data_dir") and hparams.data_dir)
dataset_kwargs = dataset_kwargs or {}
dataset_kwargs.update({
"mode": mode,
"data_dir": data_dir,
"num_threads": num_threads,
"hparams": hparams,
"partition_id": partition_id,
"num_partitions": num_partitions,
})
dataset = self.dataset(**dataset_kwargs)
if is_training:
# Repeat and skip a random number of records
dataset = dataset.repeat()
data_files = tf.contrib.slim.parallel_reader.get_data_files(
self.filepattern(data_dir, mode))
# In continuous_train_and_eval when switching between train and
# eval, this input_fn method gets called multiple times and it
# would give you the exact same samples from the last call
# (because the Graph seed is set). So this skip gives you some
# shuffling.
dataset = skip_random_fraction(dataset, data_files[0])
dataset = dataset.map(
data_reader.cast_ints_to_int32, num_parallel_calls=num_threads)
if self.batch_size_means_tokens:
batch_size_means_tokens = True
else:
if _are_shapes_fully_defined(dataset.output_shapes):
batch_size_means_tokens = False
else:
tf.logging.warning(
"Shapes are not fully defined. Assuming batch_size means tokens.")
batch_size_means_tokens = True
# Batching
if not batch_size_means_tokens:
# Batch size means examples per datashard.
if config and config.use_tpu:
# on TPU, we use params["batch_size"], which specifies the number of
# examples across all datashards
batch_size = params["batch_size"]
dataset = dataset.batch(batch_size, drop_remainder=True)
else:
num_shards = config.data_parallelism.n if config else 1
batch_size = hparams.batch_size * num_shards
dataset = dataset.batch(batch_size)
else:
# batch_size means tokens per datashard
if config and config.use_tpu:
dataset = dataset.filter(tpu_valid_size)
padded_shapes = self._pad_for_tpu(dataset.output_shapes, hparams)
# on TPU, we use params["batch_size"], which specifies the number of
# examples across all datashards
batch_size = params["batch_size"]
dataset = dataset.apply(
tf.contrib.data.padded_batch_and_drop_remainder(
batch_size, padded_shapes))
else:
# On GPU, bucket by length
dataset = dataset.filter(gpu_valid_size)
shard_multiplier = config.data_parallelism.n if config else 1
batching_scheme = data_reader.hparams_to_batching_scheme(
hparams,
shard_multiplier=shard_multiplier,
length_multiplier=self.get_hparams().batch_size_multiplier)
if hparams.use_fixed_batch_size:
# Here batch_size really means examples per datashard.
batching_scheme["batch_sizes"] = [hparams.batch_size]
batching_scheme["boundaries"] = []
dataset = data_reader.bucket_by_sequence_length(
dataset, data_reader.example_length, batching_scheme["boundaries"],
batching_scheme["batch_sizes"])
if not is_training:
batch_multiple = shard_multiplier
if hparams.use_fixed_batch_size:
# Make sure the last batch has the same fixed size as the rest.
batch_multiple *= hparams.batch_size
if batch_multiple > 1:
tf.logging.warn(
"Padding the batch to ensure that remainder eval batches have "
"a batch size divisible by the number of data shards. This may "
"lead to incorrect metrics for non-zero-padded features, e.g. "
"images. Use a single datashard (i.e. 1 GPU) in that case.")
dataset = dataset.map(
functools.partial(pad_batch, batch_multiple=batch_multiple),
num_parallel_calls=num_threads)
dataset = dataset.map(define_shapes, num_parallel_calls=num_threads)
def prepare_for_output(example):
if not config or not config.use_tpu:
_summarize_features(example,
(config and config.data_parallelism.n) or 1)
if mode == tf.estimator.ModeKeys.PREDICT:
example["infer_targets"] = example.pop("targets")
return example
else:
return example, example["targets"]
dataset = dataset.map(prepare_for_output, num_parallel_calls=num_threads)
dataset = dataset.prefetch(2)
if mode == tf.estimator.ModeKeys.PREDICT:
# This is because of a bug in the Estimator that short-circuits prediction
# if it doesn't see a QueueRunner. DummyQueueRunner implements the
# minimal expected interface but does nothing.
tf.add_to_collection(tf.GraphKeys.QUEUE_RUNNERS,
data_reader.DummyQueueRunner())
return dataset
def input_fn(self, mode, hparams, data_dir=None, params=None, config=None,
dataset_kwargs=None):
"""Builds input pipeline for problem.
Args:
mode: tf.estimator.ModeKeys
hparams: HParams, model hparams
data_dir: str, data directory; if None, will use hparams.data_dir
params: dict, may include "batch_size"
config: RunConfig; should have the data_parallelism attribute if not using
TPU
dataset_kwargs: dict, if passed, will pass as kwargs to self.dataset
method when called
Returns:
(features_dict<str name, Tensor feature>, Tensor targets)
"""
is_training = mode == tf.estimator.ModeKeys.TRAIN
num_threads = 4 if is_training else 1
def tpu_valid_size(example):
return data_reader.example_valid_size(example, hparams.min_length,
hparams.max_length)
def gpu_valid_size(example):
drop_long_sequences = is_training or hparams.eval_drop_long_sequences
return data_reader.example_valid_size(
example,
hparams.min_length,
hparams.max_length if drop_long_sequences else 10**9)
def define_shapes(example):
batch_size = config and config.use_tpu and params["batch_size"]
return standardize_shapes(example, batch_size=batch_size)
# Read and preprocess
data_dir = data_dir or hparams.data_dir
dataset_kwargs = dataset_kwargs or {}
dataset_kwargs.update({
"mode": mode,
"data_dir": data_dir,
"num_threads": num_threads,
"hparams": hparams})
dataset = self.dataset(**dataset_kwargs)
dataset = dataset.map(
data_reader.cast_int64_to_int32, num_parallel_calls=num_threads)
if is_training:
dataset = dataset.repeat(None)
# Batching
if _are_shapes_fully_defined(dataset.output_shapes):
# Static shape features (e.g. images)
if config and config.use_tpu:
tpu_batch_size = params["batch_size"]
dataset = dataset.apply(
tf.contrib.data.batch_and_drop_remainder(tpu_batch_size))
else:
num_shards = (config and config.data_parallelism.n) or 1
dataset = dataset.batch(hparams.batch_size * num_shards)
else:
# Variable length features
if config and config.use_tpu:
# On TPU, pad to hparams.max_length
dataset = dataset.filter(tpu_valid_size)
padded_shapes = _fill_shape_nones(
dataset.output_shapes, none_filler=hparams.max_length)
dataset = dataset.apply(
tf.contrib.data.padded_batch_and_drop_remainder(
params["batch_size"], padded_shapes))
else:
# On GPU, bucket by length
dataset = dataset.filter(gpu_valid_size)
batching_scheme = data_reader.hparams_to_batching_scheme(
hparams,
shard_multiplier=(config and config.data_parallelism.n) or 1,
length_multiplier=self.get_hparams().batch_size_multiplier)
if hparams.use_fixed_batch_size:
batching_scheme["batch_sizes"] = [hparams.batch_size]
batching_scheme["boundaries"] = []
dataset = data_reader.bucket_by_sequence_length(
dataset,
data_reader.example_length,
batching_scheme["boundaries"],
batching_scheme["batch_sizes"])
if not is_training:
def _pad_batch(features):
if not config or config.data_parallelism.n <= 1:
return features
tf.logging.warn(
"Padding the batch to ensure that remainder eval batches have "
"a batch size divisible by the number of data shards. This may "
"lead to incorrect metrics for non-zero-padded features, e.g. "
"images. Use a single datashard (i.e. 1 GPU) in that case.")
return pad_batch(features, config.data_parallelism.n)
dataset = dataset.map(_pad_batch, num_parallel_calls=num_threads)
dataset = dataset.map(define_shapes, num_parallel_calls=num_threads)
dataset = dataset.prefetch(1)
features = dataset.make_one_shot_iterator().get_next()
if not config or not config.use_tpu:
_summarize_features(features, (config and config.data_parallelism.n) or 1)
if mode == tf.estimator.ModeKeys.PREDICT:
features["infer_targets"] = features["targets"]
features["targets"] = None
# This is because of a bug in the Estimator that short-circuits prediction
# if it doesn't see a QueueRunner. DummyQueueRunner implements the
# minimal expected interface but does nothing.
tf.add_to_collection(tf.GraphKeys.QUEUE_RUNNERS,
data_reader.DummyQueueRunner())
return features, features["targets"]
