def dataProvider_testRuncmd(self):
# 0: Normal
yield testly.Data(
cmd2run='ls',
logs=['RUNNING: ls', '- PID', '- STDERR', '- RETURNCODE: 0'])
# 1: Stderr
yield testly.Data(cmd2run='echo 1 1>&2; echo 2 1>&2',
logs=[
'RUNNING: echo', '- PID:', '- STDERR: 1',
'- STDERR: 2', '- RETURNCODE: 0'
])
# 2: Exception
yield testly.Data(cmd2run='nosuchcmd', raised=True)
# 3: Another rc
yield testly.Data(cmd2run='exit 127', rc=127)
def getData(datafile=DATAFILE):
with open(datafile) as stream:
data = yaml.load(stream)
for key, value in data.items():
kparts = key.split('.')
tag = kparts[-1] if len(kparts) > 2 else 'default'
proc = '.'.join(kparts[:2])
args = {'tag': tag}
exptfiles = {}
opt1 = {}
opt2 = {}
for k, v in value.items():
ret = args
if k[:2] in ['i.', 'o.']:
v = getioval(v, proc)
if k[:2] == 'o.':
k = k[2:]
exptfiles[k] = v
elif isinstance(v, list):
args[k + ':list:one'] = v
else:
args[k] = v
elif k.startswith('opt'):
ret = opt1 if k.startswith('opt1.') else opt2
ret[k[5:]] = v
else:
ret[k] = v
yield testly.Data(proc=proc,
args=args,
exptfiles=exptfiles,
opt1=opt1,
opt2=opt2)
def dataProvider_testCoerceValue(self):
yield testly.Data('1', outval=1)
yield testly.Data('1.1', outval=1.1)
yield testly.Data('1.1E-2', outval=0.011)
yield testly.Data('TRUE', outval=True)
yield testly.Data('py:[1,2]', outval=[1, 2])
yield testly.Data(True, outval=True)
yield '1', 'int', 1
yield '1.1', 'float', 1.1
yield 'False', 'bool', False
yield True, 'str', 'True'
yield 'a', 'int', None, ParameterTypeError
yield '{"a":1}', 'py', {"a": 1}
yield '1', 'list', [1]
yield '1', 'list:str', ['1']
yield '1', 'list:bool', [True]
yield 123, 'x', 123
yield 1, 'list:one', [[1]]
def dataProvider_testAddListFromFile(self): yield testly.Data(GENES_FILE.name, col = 1)
def dataProvider_testCmdargs(self):
# 0: empty
yield testly.Data(params={}, ret='')
# 1: unexpected order
yield testly.Data(params=dict(b=1, a=2), ret='-a 2 -b 1')
# 2: keeping order
yield testly.Data(params=OrderedDict([('b', 1), ('a', 2)]),
ret='-b 1 -a 2')
# 3: preceding positional arguments
yield testly.Data(params={'': 'x', 'b': 1, 'a': 2}, ret='x -a 2 -b 1')
# 4: ending positional arguments
yield testly.Data(params={'_': 'x', 'b': 1, 'a': 2}, ret='-a 2 -b 1 x')
# 5: write stdout to a file
yield testly.Data(params={
'_': 'x',
'b': 1,
'a': 2,
'_stdout': 'file'
},
ret='-a 2 -b 1 x > file')
# 6: append stdout to a file
yield testly.Data(params={
'_': 'x',
'b': 1,
'a': 2,
'__stdout': 'file'
},
ret='-a 2 -b 1 x >> file')
# 7: dash and equal
yield testly.Data(params=OrderedDict([('b', 1), ('ac', 2)]),
ret='-b 1 --ac=2')
# 8: dash with '-'
yield testly.Data(params=OrderedDict([('b', 1), ('ac', 2)]),
dash='-',
ret='-b 1 -ac=2')
# 9: equal with ' '
yield testly.Data(params=OrderedDict([('b', 1), ('ac', 2)]),
equal=' ',
ret='-b 1 --ac 2')
# 10: bools, ignorefalse = True
yield testly.Data(params=dict(a=False, b=True),
ignorefalse=True,
ret='-b')
# 11: bools, ignorefalse = False
yield testly.Data(params=dict(a=False, b=True),
ignorefalse=False,
ret='-a 0 -b')
# 12: list
yield testly.Data(params=dict(a=[1, 2, 3]),
duplistkey=False,
ret='-a 1 2 3')
# 13: list, duplistkey = True
yield testly.Data(params=dict(a=[1, 2, 3]),
duplistkey=True,
ret='-a 1 -a 2 -a 3')
# 14: multiple same keys
yield testly.Data(params={
'a': 1,
'a #1': 2,
'a #2': 3
},
ret='-a 1 -a 2 -a 3')
# 15: quote
yield testly.Data(params=dict(a='hello world', b='"'),
ret='-a \'hello world\' -b \'"\'')