def test_process_other_id_records(app, mocker):
"""Test create or update researcher other id."""
mocker.patch("orcid_hub.utils.send_email", send_mail_mock)
mocker.patch("orcid_api.MemberAPIV20Api.create_external_identifier",
create_or_update_fund_mock)
mocker.patch("orcid_hub.orcid_client.MemberAPI.get_record",
return_value=get_profile())
org = app.data["org"]
u = User.create(email="*****@*****.**",
name="TEST USER",
roles=Role.RESEARCHER,
orcid="12344",
confirmed=True,
organisation=org)
UserOrg.create(user=u, org=org)
t = Task.create(org=org,
filename="xyz.json",
created_by=u,
updated_by=u,
task_type=TaskType.OTHER_ID)
OtherIdRecord.create(task=t,
type="grant_number",
value="xyz",
url="https://xyz.com",
relationship="SELF",
is_active=True,
status="email sent",
first_name="Test",
last_name="Test",
email="*****@*****.**",
visibility="PUBLIC",
display_index=1)
UserInvitation.create(invitee=u,
inviter=u,
org=org,
task=t,
email="*****@*****.**",
token="xyztoken")
OrcidToken.create(user=u,
org=org,
scopes="/read-limited,/person/update",
access_token="Test_token")
utils.process_other_id_records()
record = OtherIdRecord.get(email="*****@*****.**")
assert 12399 == record.put_code
assert "12344" == record.orcid
def test_sync_profile(app, mocker):
"""Test sync_profile."""
mocker.patch("orcid_api.MemberAPIV20Api.update_employment",
return_value=Mock(status=201,
headers={'Location': '12344/XYZ/54321'}))
mocker.patch("orcid_api.MemberAPIV20Api.update_education",
return_value=Mock(status=201,
headers={'Location': '12344/XYZ/12345'}))
org = Organisation.create(
name="THE ORGANISATION:test_sync_profile",
tuakiri_name="THE ORGANISATION:test_sync_profile",
confirmed=True,
orcid_client_id="APP-5ZVH4JRQ0C27RVH5",
orcid_secret="Client Secret",
city="CITY",
country="COUNTRY",
disambiguated_id="ID",
disambiguation_source="SOURCE")
u = User.create(email="*****@*****.**",
name="TEST USER",
roles=Role.RESEARCHER,
orcid="12344",
confirmed=True,
organisation=org)
UserOrg.create(user=u, org=org)
access_token = "ACCESS-TOKEN"
t = Task.create(org=org, task_type=TaskType.SYNC)
api = MemberAPI(org=org)
mocker.patch("orcid_hub.orcid_client.MemberAPI.get_record",
lambda *args: None)
api.sync_profile(task=t, user=u, access_token=access_token)
OrcidToken.create(user=u,
org=org,
scope="/read-limited,/activities/update")
mocker.patch("orcid_hub.orcid_client.MemberAPI.get_record",
lambda *args: None)
api.sync_profile(task=t, user=u, access_token=access_token)
assert Log.select().count() > 0
mocker.patch("orcid_hub.orcid_client.MemberAPI.get_record",
return_value=get_profile())
api.sync_profile(task=t, user=u, access_token=access_token)
last_log = Log.select().order_by(Log.id.desc()).first()
assert "Successfully update" in last_log.message
def test_create_or_update_affiliation(app, mocker):
"""Test create or update affiliation."""
mocker.patch("orcid_api.MemberAPIV20Api.update_employment",
return_value=Mock(status=201,
headers={'Location': '12344/XYZ/12399'}))
mocker.patch("orcid_api.MemberAPIV20Api.create_employment",
return_value=Mock(status=201,
headers={'Location': '12344/XYZ/12399'}))
send_email = mocker.patch("orcid_hub.utils.send_email")
capture_event = mocker.patch(
"sentry_sdk.transport.HttpTransport.capture_event")
org = app.data["org"]
u = User.create(email="*****@*****.**",
name="TEST USER",
roles=Role.RESEARCHER,
orcid="123",
confirmed=True,
organisation=org)
UserOrg.create(user=u, org=org)
t = Task.create(org=org,
filename="xyz.json",
created_by=u,
updated_by=u,
task_type=TaskType.AFFILIATION)
OrcidToken.create(user=u,
org=org,
scopes="/read-limited,/activities/update",
access_token="Test_token")
UserInvitation.create(invitee=u,
inviter=u,
org=org,
task=t,
email="*****@*****.**",
token="xyztoken")
u = User.create(email="*****@*****.**",
name="TEST USER 2",
roles=Role.RESEARCHER,
confirmed=True,
organisation=org)
UserOrg.create(user=u, org=org)
AffiliationRecord.create(is_active=True,
task=t,
external_id="Test",
first_name="Test",
last_name="Test",
email="*****@*****.**",
orcid="123112311231",
organisation="asdasd",
affiliation_type="staff",
role="Test",
department="Test",
city="Test",
state="Test",
country="Test",
disambiguated_id="Test",
disambiguation_source="Test")
AffiliationRecord.create(is_active=True,
task=t,
external_id="Test",
first_name="Test",
last_name="Test",
email="*****@*****.**",
orcid="123112311231",
organisation=org.name,
affiliation_type="staff",
role="Test",
department="Test",
city="Test",
state="Test",
country="Test")
AffiliationRecord.create(is_active=True,
task=t,
external_id="Test",
first_name="Test",
last_name="Test",
email="*****@*****.**",
orcid="123112311231",
organisation="ANOTHER ORG",
affiliation_type="staff",
role="Test",
department="Test",
city="Test",
state="Test",
country="Test",
visibility="PUBLIC")
AffiliationRecord.create(is_active=True,
task=t,
external_id="Test#2",
first_name="Test2",
last_name="Test2",
email="*****@*****.**",
organisation=org.name,
affiliation_type="staff")
tasks = (Task.select(
Task, AffiliationRecord, User,
UserInvitation.id.alias("invitation_id"), OrcidToken).join(
AffiliationRecord,
on=(Task.id == AffiliationRecord.task_id).alias("record")).join(
User,
JOIN.LEFT_OUTER,
on=((User.email == AffiliationRecord.email)
| (User.orcid == AffiliationRecord.orcid))).join(
Organisation,
JOIN.LEFT_OUTER,
on=(Organisation.id == Task.org_id)).join(
UserInvitation,
JOIN.LEFT_OUTER,
on=((UserInvitation.email
== AffiliationRecord.email)
& (UserInvitation.task_id == Task.id))).
join(OrcidToken,
JOIN.LEFT_OUTER,
on=((OrcidToken.user_id == User.id)
& (OrcidToken.org_id == Organisation.id)
& (OrcidToken.scopes.contains("/activities/update")))))
app.config["SERVER_NAME"] = "orcidhub"
for (task_id, org_id, user), tasks_by_user in groupby(
tasks, lambda t: (
t.id,
t.org_id,
t.record.user,
)):
with patch("orcid_hub.orcid_client.MemberAPI.get_record",
return_value=get_profile()
if user.orcid else None) as get_record:
utils.create_or_update_affiliations(user=user,
org_id=org_id,
records=tasks_by_user)
get_record.assert_any_call()
affiliation_record = AffiliationRecord.select().order_by(
AffiliationRecord.id).limit(1).first()
assert 12399 == affiliation_record.put_code
assert "12344" == affiliation_record.orcid
assert ("Employment record was updated" in affiliation_record.status
or "Employment record was created" in affiliation_record.status)
capture_event.assert_called()
send_email.assert_called_once()
def test_create_or_update_property_record(app, mocker):
"""Test create or update researcher keyword, researcher url, other name and country"""
mocker.patch("orcid_hub.utils.send_email", send_mail_mock)
mocker.patch("orcid_api.MemberAPIV20Api.create_keyword",
create_or_update_fund_mock)
mocker.patch("orcid_api.MemberAPIV20Api.create_researcher_url",
create_or_update_fund_mock)
mocker.patch("orcid_api.MemberAPIV20Api.create_other_name",
create_or_update_fund_mock)
mocker.patch("orcid_api.MemberAPIV20Api.create_address",
create_or_update_fund_mock)
mocker.patch("orcid_hub.orcid_client.MemberAPI.get_record",
return_value=get_profile())
org = app.data["org"]
u = User.create(email="*****@*****.**",
name="TEST USER",
roles=Role.RESEARCHER,
orcid="12344",
confirmed=True,
organisation=org)
UserOrg.create(user=u, org=org)
OrcidToken.create(user=u,
org=org,
scopes="/read-limited,/person/update",
access_token="Test_token")
t = Task.create(id=12,
org=org,
filename="xyz.json",
created_by=u,
updated_by=u,
task_type=TaskType.PROPERTY)
PropertyRecord.create(task=t,
type="KEYWORD",
is_active=True,
status="email sent",
first_name="Test",
last_name="Test",
email="*****@*****.**",
visibility="PUBLIC",
value="dummy name",
display_index=1)
PropertyRecord.create(task=t,
type="COUNTRY",
is_active=True,
status="email sent",
first_name="Test",
last_name="Test",
email="*****@*****.**",
visibility="PUBLIC",
value="IN",
display_index=1)
PropertyRecord.create(task=t,
type="URL",
is_active=True,
status="email sent",
first_name="Test",
last_name="Test",
email="*****@*****.**",
visibility="PUBLIC",
name="url name",
value="https://www.xyz.com",
display_index=1)
PropertyRecord.create(task=t,
type="NAME",
is_active=True,
status="email sent",
first_name="Test",
last_name="Test",
email="*****@*****.**",
visibility="PUBLIC",
value="dummy name",
display_index=1)
UserInvitation.create(invitee=u,
inviter=u,
org=org,
task=t,
email="*****@*****.**",
token="xyztoken")
utils.process_property_records()
keyword_record = PropertyRecord.get(email="*****@*****.**",
type="KEYWORD")
assert 12399 == keyword_record.put_code
assert "12344" == keyword_record.orcid
address_record = PropertyRecord.get(email="*****@*****.**",
type="COUNTRY")
assert 12399 == address_record.put_code
assert "12344" == address_record.orcid
url_record = PropertyRecord.get(email="*****@*****.**",
type="URL")
assert 12399 == url_record.put_code
assert "12344" == url_record.orcid
other_name_record = PropertyRecord.get(email="*****@*****.**",
type="NAME")
assert 12399 == other_name_record.put_code
assert "12344" == other_name_record.orcid
def test_create_or_update_peer_review(app, mocker):
"""Test create or update peer review."""
mocker.patch("orcid_hub.utils.send_email", send_mail_mock)
mocker.patch("orcid_api.MemberAPIV20Api.create_peer_review",
create_or_update_fund_mock)
mocker.patch("orcid_hub.orcid_client.MemberAPI.get_record",
return_value=get_profile())
org = app.data["org"]
u = User.create(email="*****@*****.**",
name="TEST USER",
roles=Role.RESEARCHER,
orcid="12344",
confirmed=True,
organisation=org)
UserOrg.create(user=u, org=org)
t = Task.create(id=12,
org=org,
filename="xyz.json",
created_by=u,
updated_by=u,
task_type=TaskType.PEER_REVIEW)
pr = PeerReviewRecord.create(task=t,
review_group_id="issn:12131",
reviewer_role="reviewer",
review_url="xyz",
review_type="REVIEW",
subject_external_id_type="doi",
subject_external_id_value="1212",
subject_external_id_url="url/SELF",
subject_external_id_relationship="SELF",
subject_container_name="Journal title",
subject_type="JOURNAL_ARTICLE",
subject_name_title="name",
subject_name_subtitle="subtitle",
subject_name_translated_title_lang_code="en",
subject_name_translated_title="sdsd",
subject_url="url",
convening_org_name="THE ORGANISATION",
convening_org_city="auckland",
convening_org_region="auckland",
convening_org_country="nz",
convening_org_disambiguated_identifier="123",
convening_org_disambiguation_source="1212",
is_active=True)
PeerReviewInvitee.create(record=pr,
first_name="Test",
email="*****@*****.**",
orcid="12344",
visibility="PUBLIC")
PeerReviewExternalId.create(record=pr,
type="Test_type",
value="122334_different",
url="Test",
relationship="SELF")
UserInvitation.create(invitee=u,
inviter=u,
org=org,
task=t,
email="*****@*****.**",
token="xyztoken")
OrcidToken.create(user=u,
org=org,
scopes="/read-limited,/activities/update",
access_token="Test_token")
utils.process_peer_review_records()
peer_review_invitees = PeerReviewInvitee.get(orcid=12344)
assert 12399 == peer_review_invitees.put_code
assert "12344" == peer_review_invitees.orcid
def test_create_or_update_work(app, mocker):
"""Test create or update work."""
mocker.patch("orcid_hub.utils.send_email", send_mail_mock)
mocker.patch("orcid_api.MemberAPIV20Api.create_work",
create_or_update_fund_mock)
mocker.patch("orcid_hub.orcid_client.MemberAPI.get_record",
return_value=get_profile())
org = app.data["org"]
u = User.create(email="*****@*****.**",
name="TEST USER",
roles=Role.RESEARCHER,
orcid="12344",
confirmed=True,
organisation=org)
UserOrg.create(user=u, org=org)
t = Task.create(org=org,
filename="xyz.json",
created_by=u,
updated_by=u,
task_type=TaskType.WORK)
wr = WorkRecord.create(task=t,
title="Test titile",
sub_title="Test titile",
translated_title="Test title",
translated_title_language_code="Test",
journal_title="Test titile",
short_description="Test desc",
citation_type="Test",
citation_value="Test",
type="BOOK_CHAPTER",
url="Test org",
language_code="en",
country="Test",
org_name="Test_orgname",
city="Test city",
region="Test",
is_active=True)
WorkInvitee.create(record=wr,
first_name="Test",
email="*****@*****.**",
orcid="12344",
visibility="PUBLIC")
WorkExternalId.create(record=wr,
type="Test_type",
value="Test_value",
url="Test",
relationship="SELF")
WorkContributor.create(record=wr,
contributor_sequence="1",
orcid="1213",
role="LEAD",
name="xyz",
email="*****@*****.**")
UserInvitation.create(invitee=u,
inviter=u,
org=org,
task=t,
email="*****@*****.**",
token="xyztoken")
OrcidToken.create(user=u,
org=org,
scopes="/read-limited,/activities/update",
access_token="Test_token")
utils.process_work_records()
invitee = WorkInvitee.get(orcid="12344")
assert 12399 == invitee.put_code
assert "12344" == invitee.orcid
def test_create_or_update_funding(app, mocker):
"""Test create or update funding."""
mocker.patch("orcid_hub.utils.send_email", send_mail_mock)
mocker.patch("orcid_api.MemberAPIV20Api.create_funding",
create_or_update_fund_mock)
mocker.patch("orcid_hub.orcid_client.MemberAPI.get_record",
return_value=get_profile())
org = app.data["org"]
u = User.create(email="*****@*****.**",
name="TEST USER",
roles=Role.RESEARCHER,
orcid="123",
confirmed=True,
organisation=org)
UserOrg.create(user=u, org=org)
t = Task.create(org=org,
filename="xyz.json",
created_by=u,
updated_by=u,
task_type=TaskType.FUNDING)
fr = FundingRecord.create(task=t,
title="Test titile",
translated_title="Test title",
translated_title_language_code="Test",
type="GRANT",
organization_defined_type="Test org",
short_description="Test desc",
amount="1000",
currency="USD",
org_name="Test_orgname",
city="Test city",
region="Test",
country="Test",
disambiguated_id="Test_dis",
disambiguation_source="Test_source",
is_active=True)
FundingInvitee.create(record=fr,
first_name="Test",
email="*****@*****.**",
visibility="PUBLIC",
orcid="123")
ExternalId.create(record=fr,
type="Test_type",
value="Test_value",
url="Test",
relationship="SELF")
FundingContributor.create(record=fr,
orcid="1213",
role="LEAD",
name="Contributor",
email="*****@*****.**")
UserInvitation.create(invitee=u,
inviter=u,
org=org,
task=t,
email="*****@*****.**",
token="xyztoken")
OrcidToken.create(user=u,
org=org,
scopes="/read-limited,/activities/update",
access_token="Test_token")
utils.process_funding_records()
funding_invitees = FundingInvitee.get(orcid="12344")
assert 12399 == funding_invitees.put_code
assert "12344" == funding_invitees.orcid
def test_sync_profile(app, mocker):
"""Test sync_profile."""
mocker.patch("orcid_api.MemberAPIV20Api.update_employment",
return_value=Mock(status=201,
headers={'Location': '12344/XYZ/54321'}))
mocker.patch("orcid_api.MemberAPIV20Api.update_education",
return_value=Mock(status=201,
headers={'Location': '12344/XYZ/12345'}))
def sync_profile_mock(*args, **kwargs):
utils.sync_profile(*args, **kwargs)
return Mock(id="test-test-test-test")
mocker.patch("orcid_hub.utils.sync_profile.queue", sync_profile_mock)
org = Organisation.create(
name="THE ORGANISATION:test_sync_profile",
tuakiri_name="THE ORGANISATION:test_sync_profile",
confirmed=True,
orcid_client_id="APP-5ZVH4JRQ0C27RVH5",
orcid_secret="Client Secret",
city="CITY",
country="COUNTRY",
disambiguated_id="ID",
disambiguation_source="SOURCE")
u = User.create(email="*****@*****.**",
name="TEST USER",
roles=Role.RESEARCHER,
orcid="12344",
confirmed=True,
organisation=org)
UserOrg.create(user=u, org=org)
utils.sync_profile(task_id=999999)
t = Task.create(org=org, task_type=TaskType.SYNC)
mocker.patch("orcid_hub.orcid_client.MemberAPI.get_record",
lambda *args: None)
utils.sync_profile(task_id=t.id, delay=0)
resp = get_profile()
mocker.patch("orcid_hub.orcid_client.MemberAPI.get_record",
lambda *args: resp)
utils.sync_profile(task_id=t.id, delay=0)
resp["activities-summary"]["educations"]["education-summary"] = []
mocker.patch("orcid_hub.orcid_client.MemberAPI.get_record",
lambda *args: resp)
utils.sync_profile(task_id=t.id, delay=0)
mocker.patch("orcid_hub.orcid_client.MemberAPI.update_employment",
side_effect=Exception("FAILED"))
utils.sync_profile(task_id=t.id, delay=0)
resp["activities-summary"]["employments"]["employment-summary"][0][
"source"] = None
resp["activities-summary"]["employments"]["employment-summary"][0][
"source"] = None
mocker.patch("orcid_hub.orcid_client.MemberAPI.get_record",
lambda *args: resp)
utils.sync_profile(task_id=t.id, delay=0)
org.disambiguated_id = None
org.save()
utils.sync_profile(task_id=t.id, delay=0)
assert Log.select().count() > 0