def test():
com = Common()
print('------- start test -------')
token = com.get_auth_token()
# check the auth token is the right length
assert len(token) == com.AUTH_TOKEN_EXPECTED_LENGTH_TO_CM, 'auth token length: expected {}, observed {}'.format(
com.AUTH_TOKEN_EXPECTED_LENGTH_TO_CM,
len(token))
print('------- test done --------')
def test():
com = Common()
print('------- get the token -------')
token_raw = com.get_auth_token()
[y, token_value] = token_raw.split()
print('------- create the LIMS order request -------')
method = 'POST'
url = com.get_cm_ip() + 'lims/postOrder'
# this test will create three orders with preface of [40,41,42] for LIMS_ID and SERIAL_NUMBER
# the three tests will be later cancelled by later tests
for prefix in ['40', '41', '42']:
lims_id_generic = com.get_unique_lims_id()
lims_id_specific = prefix + lims_id_generic[2:]
# serial_number_generic = com.get_unique_serial_number_em_bb()
# serial_number_specific = serial_number_generic[0] + prefix + serial_number_generic[3:]
serial_number_specific = ""
# sample_id = "s10000" # hard code sample id
sample_id = ""
# lot_batch_id = "B11"
lot_batch_id = ""
headers = {
'accept': 'application/json',
'Content-Type': 'application/json',
'Authorization': token_raw,
}
fields = {}
body_raw = {
"instr_id": com.get_sm_inst_id(1),
"lims_id": lims_id_specific,
"serial_number": serial_number_specific,
"sample_id": sample_id,
"lot_batch_id": lot_batch_id,
"method_name": '',
"handling_rule_name": '',
"action_alert_level_name": '',
"aal_cfu_threshold_alert": '',
"aal_cfu_threshold_action": '',
"aal_cfu_threshold_specification": '',
"aal_cfu_threshold_pass": '',
"comment": com.get_random_comment_order(),
}
print('--------------body raw-----------------')
print(body_raw)
body_encoded = json.dumps(body_raw).encode('utf-8')
print('------- issue the LIMS order request to CM -------')
r = com.http.request(method=method,
url=url,
headers=headers,
fields=fields,
body=body_encoded,
retries=False,
timeout=120.0)
print('------- response from CM is here -------')
print('r.headers =\n{}'.format(r.headers))
print('r.status =\n{}'.format(r.status))
print('r.data =\n{}'.format(r.data))
assert r.status == 200, "response has bad status: expected 200 observed {}".format(
r.status)
print('------- test done --------')
def test():
com = Common()
print('------- get the token -------')
token = com.get_auth_token()
print('------- create the LIMS cancel request -------')
data = com.sm_retrieve_get_test_list(1)
for n, row in data.items():
lims_id = row['lims_id']
serial_number = row['serial_number']
if lims_id[0:2] == '42':
print('------- using LIMS Cancel command to cancel assay: LIMS_ID {} serial num {}'.format(lims_id, serial_number))
method = 'POST'
url = com.get_cm_ip() + 'lims/postCancel'
headers = {
'accept': 'application/json',
'Content-Type': 'application/json',
'Authorization': token,
}
fields = {}
body_raw = {
"instr_id": com.get_sm_inst_id(1),
"lims_id": lims_id,
"serial_number": '',
"sample_id": '',
"lot_batch_id": '',
}
body_encoded = json.dumps(body_raw).encode('utf-8')
print('------- issue the LIMS cancel request to CM -------')
r = com.http.request(
method=method,
url=url,
headers=headers,
fields=fields,
body=body_encoded,
retries=False,
timeout=120.0)
print('------- response from CM is here -------')
assert r.status == 200, "response has bad status"
print('------- test done --------')
print('------- test is done -------')
def test():
com = Common()
print('------- get the token -------')
token_raw = com.get_auth_token()
print('------- create the LIMS order request -------')
method = 'POST'
url = com.get_cm_ip() + 'lims/postOrder'
instr_id = com.get_sm_inst_id(1)
lims_id = com.get_unique_lims_id()
serial_number = ""
lot_batch = ""
sample_id = ""
mm = "mm10000"
aa = "aa"
hr = "hr"
headers = {
'accept': 'application/json',
'Content-Type': 'application/json',
'Authorization': token_raw,
}
fields = {}
body_raw = {
"instr_id": instr_id,
"lims_id": lims_id,
"serial_number": serial_number,
"sample_id": sample_id,
"lot_batch_id": lot_batch,
"method_name": mm,
"handling_rule_name": hr,
"action_alert_level_name": aa,
"aal_cfu_threshold_alert": '',
"aal_cfu_threshold_action": '',
"aal_cfu_threshold_specification": '',
"aal_cfu_threshold_pass": '',
"comment": com.get_random_comment_order(),
}
print('--------------body raw-----------------')
print(body_raw)
body_encoded = json.dumps(body_raw).encode('utf-8')
print('------- issue the LIMS order request to CM -------')
r = com.http.request(
method=method,
url=url,
headers=headers,
fields=fields,
body=body_encoded,
retries=False,
timeout=120.0)
print('------- response from CM is here -------')
print('r.headers =\n{}'.format(r.headers))
print('r.status =\n{}'.format(r.status))
print('r.data =\n{}'.format(r.data))
assert r.status == 200, "response has bad status: expected 200 observed {}".format(r.status)
print('------- test done --------')
def test():
com = Common()
print('------- get the token -------')
token_raw = com.get_auth_token()
print('------- create the LIMS order request -------')
method = 'POST'
url = com.get_cm_ip() + 'lims/postOrder'
instr_id = com.get_sm_inst_id(1)
lims_id = com.get_unique_lims_id()
serial_number = ""
lot_batch = ""
sample_list = [
'', ''
] # note - this is the error case - multiple tests ordered using same LIMS_ID and no sample - first should be accepted second should be rejected
mm = "mm10000"
aa = "aa"
hr = "hr"
loop_num = 0
for sample_id in sample_list:
# junky sleep so can figure out the SM logfiles which loop it is
loop_num += 1
import time
time.sleep(3)
headers = {
'accept': 'application/json',
'Content-Type': 'application/json',
'Authorization': token_raw,
}
fields = {}
body_raw = {
"instr_id": instr_id,
"lims_id": lims_id,
"serial_number": serial_number,
"sample_id": sample_id,
"lot_batch_id": lot_batch,
"method_name": mm,
"handling_rule_name": hr,
"action_alert_level_name": aa,
"aal_cfu_threshold_alert": '',
"aal_cfu_threshold_action": '',
"aal_cfu_threshold_specification": '',
"aal_cfu_threshold_pass": '',
"comment": com.get_random_comment_order(),
}
print('--------------body raw-----------------')
print(body_raw)
body_encoded = json.dumps(body_raw).encode('utf-8')
print('------- issue the LIMS order request to CM -------')
r = com.http.request(method=method,
url=url,
headers=headers,
fields=fields,
body=body_encoded,
retries=False,
timeout=120.0)
print('------- response from CM is here -------')
print('r.headers =\n{}'.format(r.headers))
print('r.status =\n{}'.format(r.status))
print('r.data =\n{}'.format(r.data))
if loop_num == 1:
assert r.status == 200, "response has bad status: expected 200 observed {}".format(
r.status)
if loop_num == 2:
assert r.status != 200, "response has GOOD status: expected !200 observed {}".format(
r.status)
print('------- test done --------')
