def compare_channel_data(series,
channelname,
param,
simulator,
x_range=None,
plot=False):
if simulator == 'moose':
ref_file = os.path.join(config.mydir, 'testdata',
'%s_%s.dat.gz' % (channelname, param))
elif simulator == 'neuron':
ref_file = os.path.join(config.mydir, '..', 'nrn', 'data',
'%s_%s.dat.gz' % (channelname, param))
else:
raise ValueError('Unrecognised simulator: %s' % (simulator))
try:
ref_series = np.loadtxt(ref_file)
except IOError as e:
print(e)
return -1.0
if plot:
plt.figure()
plt.title(channelname)
return testutils.compare_data_arrays(ref_series,
series,
relative='meany',
x_range=x_range,
plot=plot)
def compare_channel_data(series, channelname, param, simulator, x_range=None, plot=False):
if simulator == 'moose':
ref_file = 'testdata/%s_%s.dat.gz' % (channelname, param)
elif simulator == 'neuron':
ref_file = '../nrn/data/%s_%s.dat.gz' % (channelname, param)
else:
raise ValueError('Unrecognised simulator: %s' % (simulator))
try:
ref_series = np.loadtxt(ref_file)
except IOError as e:
print(e)
return -1.0
if plot:
plt.figure()
plt.title(channelname)
return testutils.compare_data_arrays(ref_series, series, relative='meany', x_range=x_range, plot=plot)
np.savetxt(gk_file, data)
print 'Saved Gk in', gk_file
data = np.c_[tseries, ik_data.vec]
np.savetxt(ik_file, data)
print 'Saved Gk in', ik_file
return params
def compare_channel_data(series, channelname, param, simulator, x_range=None, plot=False):
if simulator == 'moose':
ref_file = 'testdata/%s_%s.dat.gz' % (channelname, param)
elif simulator == 'neuron':
ref_file = '../nrn/data/%s_%s.dat.gz' % (channelname, param)
else:
raise ValueError('Unrecognised simulator: %s' % (simulator))
try:
ref_series = np.loadtxt(ref_file)
except IOError, e:
print e
return -1.0
if plot:
plt.figure()
plt.title(channelname)
return testutils.compare_data_arrays(ref_series, series, relative='meany', x_range=x_range, plot=plot)
class ChannelTestBase(unittest.TestCase):
def __init__(self, *args, **kwargs):
unittest.TestCase.__init__(self, *args, **kwargs)
#
# channel_test_util.py ends here
