print("After RNN : ", net.get_shape().as_list())
print("After Dropout : ", net.get_shape().as_list())
net = regression(net,
optimizer='adam',
loss='binary_crossentropy',
learning_rate=0.005)
print("After regression : ", net.get_shape().as_list())
testX = trainX[int(0.3 * len(trainY)):]
testY = trainY[int(0.3 * len(trainY)):]
# Training
model = DNN(net, clip_gradients=0., tensorboard_verbose=2)
embeddingWeights = get_layer_variables_by_name('EmbeddingLayer')[0]
# Assign your own weights (for example, a numpy array [input_dim, output_dim])
model.set_weights(embeddingWeights, embeddings)
model.fit(trainX,
trainY,
n_epoch=3,
validation_set=0.1,
show_metric=True,
batch_size=32,
shuffle=True)
#print( model.evaluate(testX, testY) )
predictions = model.predict(testX)
predictions = prob2Onehot(predictions)
#print("Predictions : ", list(predictions[10]))
##Calculate F1 Score
tp = 0
tn = 0
net = fully_connected(net, 2, activation='softmax')
net = regression(net,
optimizer='adam',
loss='categorical_crossentropy',
learning_rate=0.005)
print("Done neural network")
testX = trainX[int(0.3 * len(trainY)):]
testY = trainY[int(0.3 * len(trainY)):]
# Training
model = DNN(net, clip_gradients=0., tensorboard_verbose=2)
embeddingWeights = get_layer_variables_by_name('EmbeddingLayer')[0]
POSWeights = get_layer_variables_by_name('POSLayer')[0]
#! Assign your own weights (for example, a numpy array [input_dim, output_dim])
model.set_weights(embeddingWeights, embeddings)
model.set_weights(POSWeights, POS_vectors)
model.fit(trainX,
trainY,
n_epoch=3,
validation_set=0.1,
show_metric=True,
batch_size=50,
shuffle=True)
#print( model.evaluate(testX, testY) )
predictions = model.predict(testX)
predictions = prob2Onehot(predictions)
#print("Predictions : ", list(predictions[10]))
print("Number of triggers : ",
len([pred for pred in testY if list(pred) == [1, 0]]))
def tflearn_OneClass_NN_linear(data_train, data_test, labels_train):
X = data_train
Y = labels_train
D = X.shape[1]
No_of_inputNodes = X.shape[1]
# Clear all the graph variables created in previous run and start fresh
tf.reset_default_graph()
# Define the network
input_layer = input_data(shape=[None,
No_of_inputNodes]) # input layer of size
np.random.seed(42)
theta0 = np.random.normal(0, 1, K + K * D + 1) * 0.0001
#theta0 = np.random.normal(0, 1, K + K*D + 1) # For linear
hidden_layer = fully_connected(
input_layer,
4,
bias=False,
activation='linear',
name="hiddenLayer_Weights",
weights_init="normal") # hidden layer of size 2
output_layer = fully_connected(
hidden_layer,
1,
bias=False,
activation='linear',
name="outputLayer_Weights",
weights_init="normal") # output layer of size 1
# Initialize rho
value = 0.01
init = tf.constant_initializer(value)
rho = va.variable(name='rho', dtype=tf.float32, shape=[], initializer=init)
rcomputed = []
auc = []
sess = tf.Session()
sess.run(tf.initialize_all_variables())
# print sess.run(tflearn.get_training_mode()) #False
tflearn.is_training(True, session=sess)
print sess.run(tflearn.get_training_mode()) #now True
temp = theta0[-1]
oneClassNN_Net = oneClassNN(output_layer,
v,
rho,
hidden_layer,
output_layer,
optimizer='sgd',
loss='OneClassNN_Loss',
learning_rate=1)
model = DNN(oneClassNN_Net, tensorboard_verbose=3)
model.set_weights(output_layer.W, theta0[0:K][:, np.newaxis])
model.set_weights(hidden_layer.W, np.reshape(theta0[K:K + K * D], (D, K)))
iterStep = 0
while (iterStep < 100):
print "Running Iteration :", iterStep
# Call the cost function
y_pred = model.predict(data_train) # Apply some ops
tflearn.is_training(False, session=sess)
y_pred_test = model.predict(data_test) # Apply some ops
tflearn.is_training(True, session=sess)
value = np.percentile(y_pred, v * 100)
tflearn.variables.set_value(rho, value, session=sess)
rStar = rho
model.fit(X, Y, n_epoch=2, show_metric=True, batch_size=100)
iterStep = iterStep + 1
rcomputed.append(rho)
temp = tflearn.variables.get_value(rho, session=sess)
# print "Rho",temp
# print "y_pred",y_pred
# print "y_predTest", y_pred_test
# g = lambda x: x
g = lambda x: 1 / (1 + tf.exp(-x))
def nnScore(X, w, V, g):
return tf.matmul(g((tf.matmul(X, w))), V)
# Format the datatype to suite the computation of nnscore
X = X.astype(np.float32)
X_test = data_test
X_test = X_test.astype(np.float32)
# assign the learnt weights
# wStar = hidden_layer.W
# VStar = output_layer.W
# Get weights values of fc2
wStar = model.get_weights(hidden_layer.W)
VStar = model.get_weights(output_layer.W)
# print "Hideen",wStar
# print VStar
train = nnScore(X, wStar, VStar, g)
test = nnScore(X_test, wStar, VStar, g)
# Access the value inside the train and test for plotting
# Create a new session and run the example
# sess = tf.Session()
# sess.run(tf.initialize_all_variables())
arrayTrain = train.eval(session=sess)
arrayTest = test.eval(session=sess)
# print "Train Array:",arrayTrain
# print "Test Array:",arrayTest
# plt.hist(arrayTrain-temp, bins = 25,label='Normal');
# plt.hist(arrayTest-temp, bins = 25, label='Anomalies');
# plt.legend(loc='upper right')
# plt.title('r = %1.6f- Sigmoid Activation ' % temp)
# plt.show()
pos_decisionScore = arrayTrain - temp
neg_decisionScore = arrayTest - temp
return [pos_decisionScore, neg_decisionScore]
temp = theta0[-1] * 1000000
# temp = tflearn.variables.get_value(rho, session=sess)
oneClassNN = oneClassNN(output_layer,
v,
rho,
hidden_layer,
output_layer,
optimizer='sgd',
loss='OneClassNN_Loss',
learning_rate=1)
model = DNN(oneClassNN, tensorboard_verbose=3)
model.set_weights(output_layer.W, theta0[0:K][:, np.newaxis])
model.set_weights(hidden_layer.W, np.reshape(theta0[K:K + K * D], (D, K)))
iterStep = 0
while (iterStep < 100):
print "Running Iteration :", iterStep
# Call the cost function
y_pred = model.predict(data_train) # Apply some ops
tflearn.is_training(False, session=sess)
y_pred_test = model.predict(data_test) # Apply some ops
tflearn.is_training(True, session=sess)
value = np.percentile(y_pred, v * 100)
tflearn.variables.set_value(rho, value, session=sess)
rStar = rho
model.fit(X, Y, n_epoch=2, show_metric=True, batch_size=100)
iterStep = iterStep + 1
