def __fetch_design_rack_layout(self, design_rack):
"""
Fetches the transfection layouts for each design rack.
"""
converter = TransfectionLayoutConverter(design_rack.rack_layout,
is_iso_request_layout=False,
parent=self)
tf_layout = converter.get_result()
if tf_layout is None:
msg = 'Could not get layout for design rack "%s"!' \
% (design_rack.label)
self.add_error(msg)
return tf_layout
def __fetch_design_rack_layout(self, design_rack):
"""
Fetches the transfection layouts for each design rack.
"""
converter = TransfectionLayoutConverter(design_rack.rack_layout,
is_iso_request_layout=False,
parent=self)
tf_layout = converter.get_result()
if tf_layout is None:
msg = 'Could not get layout for design rack "%s"!' \
% (design_rack.label)
self.add_error(msg)
return tf_layout
def _fetch_expected_layout(self):
"""
The expected layout is the ISO layout of the ISO request.
"""
self.add_debug('Get ISO layout ...')
converter = TransfectionLayoutConverter(
rack_layout=self.iso_request.rack_layout, parent=self)
self._expected_layout = converter.get_result()
if self._expected_layout is None:
msg = 'Error when trying to convert transfection layout.'
self.add_error(msg)
else:
self._expected_layout.close()
has_floatings = self._expected_layout.has_floatings()
if has_floatings: self.__get_iso_map()
def _fetch_expected_layout(self):
"""
The expected layout is the ISO layout of the ISO request.
"""
self.add_debug('Get ISO layout ...')
converter = TransfectionLayoutConverter(
rack_layout=self.iso_request.rack_layout,
parent=self)
self._expected_layout = converter.get_result()
if self._expected_layout is None:
msg = 'Error when trying to convert transfection layout.'
self.add_error(msg)
else:
self._expected_layout.close()
has_floatings = self._expected_layout.has_floatings()
if has_floatings: self.__get_iso_map()
def __get_experiment_layouts(self):
# Generates the transfection layouts for the experiment design's
# design racks.
self.add_debug('Determine experiment design transfection layouts ...')
for design_rack in self.experiment_design.experiment_design_racks:
experiment_layout = design_rack.rack_layout
converter = TransfectionLayoutConverter(
experiment_layout,
is_iso_request_layout=False,
is_mastermix_template=True,
parent=self)
experiment_layout = converter.get_result()
if experiment_layout is None:
msg = 'Error when trying to convert design rack layout for ' \
'design rack "%s".' % (design_rack.label)
self.add_error(msg)
break
else:
self.__experiment_layouts[design_rack.label] = \
experiment_layout
self.__sort_floatings(experiment_layout, design_rack.label)
for design_rack in self.experiment_design.experiment_design_racks:
if self.__check_for_iso_volume_and_concentration(design_rack):
break
def __get_experiment_layouts(self):
# Generates the transfection layouts for the experiment design's
# design racks.
self.add_debug('Determine experiment design transfection layouts ...')
for design_rack in self.experiment_design.experiment_design_racks:
experiment_layout = design_rack.rack_layout
converter = TransfectionLayoutConverter(
experiment_layout,
is_iso_request_layout=False,
is_mastermix_template=True,
parent=self)
experiment_layout = converter.get_result()
if experiment_layout is None:
msg = 'Error when trying to convert design rack layout for ' \
'design rack "%s".' % (design_rack.label)
self.add_error(msg)
break
else:
self.__experiment_layouts[design_rack.label] = \
experiment_layout
self.__sort_floatings(experiment_layout, design_rack.label)
for design_rack in self.experiment_design.experiment_design_racks:
if self.__check_for_iso_volume_and_concentration(design_rack):
break
