def __init__(self, path=None, root_name='result', read_only=False):
if path == None:
self.path = path
self.root = xmlTree.Element(root_name)
self.tree = xmlTree.ElementTree(self.root)
else:
self.path = path
self.tree = toolbox_basic.get_xml_tree(self.path)
self.root = self.tree.getroot()
self.path = path
self.tree = toolbox_basic.get_xml_tree(self.path)
if self.tree == None:
self.root = xmlTree.Element(root_name)
self.tree = xmlTree.ElementTree(self.root)
else:
self.root = self.tree.getroot()
self.read_only = read_only
self.header = ''
try:
if 'header' in self.root.attrib.keys():
self.header = self.root.attrib['header']
except AttributeError:
pass
self.lines = []
self.subresults = []
def find_protocol_file_xml_tree(self, filename=None):
"""
"""
if filename is None:
filename = toolbox_basic.find_protocol_file_path(self.path)
self.protocol_file_xml_tree = toolbox_basic.get_xml_tree(filename)
def __init__(self, root_dir, find_protocol=True):
self.root_dir = toolbox_basic.check_path(root_dir)
if not find_protocol: return
# Set up the space from the protocol file.
protocol_path = toolbox_basic.find_protocol_file_path(self.root_dir)
self.protocol_tree = toolbox_basic.get_xml_tree(protocol_path)
space_params = self.protocol_tree.findall('./space/param')
for param in space_params:
name, text = param.attrib['name'], param.text
if name == 'wrapping': self.wrapping = (text == 'true')
elif name == 'length': self.side_length = int(float(text))
elif name == 'nDims': self.is_3d = (int(float(text)) == 3)
marks = self.protocol_tree.findall('./mark')
for mark in marks:
for param in mark:
if param.attrib['name'] == 'value':
value = int(param.text)
if param.attrib['name'] == 'number':
number = int(param.text)
if value == 2:
self.consumers = number
else:
self.producers = number
rs = self.protocol_tree.find("./process/param[@name='randomSeed']")
self.random_seed = int(rs.text)
def __init__(self, path=None, root_name='result', read_only=False):
if path == None:
self.path = path
self.root = xmlTree.Element(root_name)
self.tree = xmlTree.ElementTree(self.root)
else:
self.path = path
self.tree = toolbox_basic.get_xml_tree(self.path)
self.root = self.tree.getroot()
self.path = path
self.tree = toolbox_basic.get_xml_tree(self.path)
if self.tree == None:
self.root = xmlTree.Element(root_name)
self.tree = xmlTree.ElementTree(self.root)
else:
self.root = self.tree.getroot()
self.read_only = read_only
self.header = ''
try:
if 'header' in self.root.attrib.keys():
self.header = self.root.attrib['header']
except AttributeError: pass
self.lines = []
self.subresults = []
def __init__(self, path=None, root_name='idynomics'):
if path == None or not os.path.isfile(path):
self.path = path
self.root = xmlTree.Element(root_name)
self.tree = xmlTree.ElementTree(self.root)
simulation = xmlTree.SubElement(self.root, 'simulation')
simulation.set('iterate', '0')
simulation.set('time', '0.0')
simulation.set('unit', 'h')
else:
self.path = toolbox_basic.check_path(path)
self.tree = toolbox_basic.get_xml_tree(self.path)
self.root = self.tree.getroot()
self.simulation = self.find('./simulation')
self.iterate = int(self.simulation.attrib['iterate'])
self.time = float(self.simulation.attrib['time'])
self.time_unit = self.simulation.attrib['unit']
