def on_apply_clicked(self, widget, clear=False):
if clear:
self.reset()
flip_horizontal = self.check_horizontal.get_active()
flip_vertical = self.check_vertical.get_active()
if self.rotate_90.get_active():
rotation_angle = 1.0
elif self.rotate_180.get_active():
rotation_angle = 2.0
elif self.rotate_270.get_active():
rotation_angle = 3.0
else:
rotation_angle = 0.0
to_update = []
if self.check_this.get_active():
to_update = [ self.no_page ]
elif self.check_all.get_active():
to_update = range(0, self.document.get_n_pages())
elif self.check_range.get_active():
to_update = get_pages_from_ranges(
get_ranges(self.range.get_text()))
for i in to_update:
if clear and str(i) in self.pages.keys():
del self.pages[str(i)]
else:
self.pages[str(i)] = PageOptions(rotation_angle,
flip_horizontal,
flip_vertical)
if self.no_page in to_update:
self.preview()
def rotate_some_pages(self, selected):
files = tools.get_files(selected)
if files:
file0 = files[0]
filename, filext = os.path.splitext(file0)
file_out = filename + '_rotated.pdf'
last_page = cairoapi.get_num_of_pages(file0)
spd = SelectPagesRotateDialog(_('Rotate some pages'), last_page,
file_out)
if spd.run() == Gtk.ResponseType.ACCEPT:
ranges = tools.get_ranges(spd.entry1.get_text())
if spd.rbutton1.get_active():
degrees = 270
elif spd.rbutton2.get_active():
degrees = 90
else:
degrees = 180
spd.destroy()
if len(ranges) > 0:
dialog = Progreso(_('Rotate some pages in pdf'), None, 1)
diboo = DoitInBackgroundOnlyOne(
pdfapi.rotate_ranges_in_pdf, file0, file_out,
degrees, ranges)
diboo.connect('done', dialog.increase)
diboo.start()
dialog.run()
else:
spd.destroy()
def on_apply_clicked(self, widget, clear=False):
if clear:
self.reset()
text = self.textmark.get_text()
color = self.button_color.get_rgba()
font = self.button_font.get_font()
size = int(self.button_font.get_font_desc().get_size()/1000)
x = self.x
y = self.y
if self.check_this.get_active():
to_update = [ self.no_page]
elif self.check_all.get_active():
to_update = range(0, self.document.get_n_pages())
elif self.check_range.get_active():
to_update = get_pages_from_ranges(
get_ranges(self.range.get_text()))
for i in to_update:
if clear and str(i) in self.pages.keys():
del self.pages[str(i)]
else:
self.pages[str(i)] = PageOptions(text_text=text,
text_color=color, text_font=font, text_size=size,
text_x=x, text_y=y)
if self.no_page in to_update:
self.preview()
def _create_inputs(tartemplate):
def rewrite_res_section(base, fil=None):
# for line in inpfil:
# if line.strip() == '[Sequence_Restraints]':
# break
# print(line, end='', file=fil)
# print('[Sequence_Restraints]', file=fil)
if "_dyn" in base and '08_dyn' not in base:
idx = int(base[:2])
print(" {1} {2} {0}".format(dyn[idx][0],
*solute_range),
file=fil)
if len(dyn[idx]) == 2:
print(" {1} {2} {0}".format(dyn[idx][1],
*solvent_range),
file=fil)
else:
for feprange in reversed(fepranges):
print(" {1} {2} {0}".format(fep, *feprange),
file=fil)
print('', file=fil)
print('', file=fil)
fil.close()
pdbfil = 'mutant.pdb'
fepfil = 'mutant.fep'
if not os.path.isfile(pdbfil):
errmsg = 'PDBFile {0} does not exist: {1}'.format(pdbfil, os.getcwd())
raise Exception(errmsg)
if not os.path.isfile(fepfil):
errmsg = 'FEPFile {0} does not exist: {1}'.format(fepfil, os.getcwd())
raise Exception(errmsg)
# determine the ranges for solute, solvent, and fepatoms
solute_range, solvent_range = tools.get_solute_and_solvent_ranges(pdbfil)
indexes = tools.get_fep_atom_pdbindexes(fepfil)
fepranges = tools.get_ranges(indexes)
tartemplate.extractall()
for inp in os.listdir('.'):
if inp[-4:] == ".inp":
if "_eq" in inp or "_fep" in inp or "_dyn" in inp:
base = os.path.basename(inp)
rewrite_res_section(base, open(inp, 'a'))
def handle_update_availability(put_data):
""" Helper method to handle the update_availability API call. """
response = {}
try:
if not 'id' in session:
raise Exception('No id given')
if 'availability' not in put_data:
raise Exception('No availability provided.')
if len(put_data['availability']) < 1:
avail = []
else:
avail = tools.get_ranges(
[int(x) for x in put_data['availability'].split(';')])
return handle_edit_user({'availability': pickle.dumps(avail)})
except Exception as e:
response['status'] = 'failure'
response['message'] = e.message
return response
def handle_update_availability(put_data):
""" Helper method to handle the update_availability API call. """
response = {}
try:
if not 'id' in session:
raise Exception('No id given')
if 'availability' not in put_data:
raise Exception('No availability provided.')
if len(put_data['availability']) < 1:
avail = []
else:
avail = tools.get_ranges([int(x) for x in put_data['availability'].split(';')])
return handle_edit_user({'availability': pickle.dumps(avail)})
except Exception as e:
response['status'] = 'failure'
response['message'] = e.message
return response
def extract_some_pages(selected, window):
files = tools.get_files(selected)
if files:
spd = SelectPagesDialog(_('Extract pages from PDF'),
None, window)
if spd.run() == Gtk.ResponseType.ACCEPT:
ranges = tools.get_ranges(spd.entry1.get_text())
spd.hide()
if ranges:
dialog = Progreso(_('Extract pages from PDF'),
window, 1)
diboo = doitinbackground.DoitInBackgroundExtractSomePages(
files, ranges)
diboo.connect('todo', dialog.set_todo_label)
diboo.connect('donef', dialog.set_fraction)
diboo.connect('finished', dialog.end_progress)
diboo.connect('interrupted', dialog.end_progress)
dialog.connect('i-want-stop', diboo.stop_it)
diboo.start()
dialog.run()
spd.destroy()
def extract_some_pages(self, selected):
files = tools.get_files(selected)
if files:
file0 = files[0]
filename, filext = os.path.splitext(file0)
file_out = filename + '_extracted_pages.pdf'
last_page = cairoapi.get_num_of_pages(file0)
spd = SelectPagesDialog(_('Extract some pages'), last_page,
file_out)
if spd.run() == Gtk.ResponseType.ACCEPT:
ranges = tools.get_ranges(spd.entry1.get_text())
file_out = spd.get_file_out()
spd.destroy()
if len(ranges) > 0:
dialog = Progreso(_('Extract some pages in pdf'), None, 1)
diboo = DoitInBackgroundOnlyOne(
pdfapi.extract_ranges, file0, file_out, ranges)
diboo.connect('done', dialog.increase)
diboo.start()
dialog.run()
else:
spd.destroy()
def on_apply_clicked(self, widget, clear=False):
if clear:
self.reset()
file_watermark = self.file_entry.get_label()
if not os.path.exists(file_watermark):
file_watermark = None
zoom = float(self.zoom_entry.get_value() / 100.0)
if self.check_this.get_active():
to_update = [ self.no_page]
elif self.check_all.get_active():
to_update = range(0, self.document.get_n_pages())
elif self.check_range.get_active():
to_update = get_pages_from_ranges(
get_ranges(self.range.get_text()))
for i in to_update:
if clear and str(i) in self.pages.keys():
del self.pages[str(i)]
else:
self.pages[str(i)] = PageOptions(image_x=self.x,
image_y=self.y, image_zoom=zoom, image_file=file_watermark)
if self.no_page in to_update:
self.preview()
def remove_some_pages(selected, window):
files = tools.get_files(selected)
if files:
file0 = files[0]
filename = os.path.splitext(file0)[0]
file_out = filename + '_removed_pages.pdf'
spd = SelectPagesDialog(_('Remove PDF'),
file_out, window)
if spd.run() == Gtk.ResponseType.ACCEPT:
ranges = tools.get_ranges(spd.entry1.get_text())
file_out = spd.get_file_out()
spd.hide()
if ranges:
dialog = Progreso(_('Remove PDF'), window, 1)
diboo = doitinbackground.DoitInBackgroundRemoveSomePages(
file0, file_out, ranges)
diboo.connect('start', dialog.set_max_value)
diboo.connect('done', dialog.increase)
diboo.connect('finished', dialog.end_progress)
diboo.connect('interrupted', dialog.end_progress)
dialog.connect('i-want-stop', diboo.stop_it)
diboo.start()
dialog.run()
spd.destroy()