def get_all_components():
comps = {}
# If RMF is being built as part of IMP, split out its build (rather than
# building it as part of IMP.rmf)
special_dep_targets = {"RMF": RMFDependency}
for dep, cls in special_dep_targets.items():
i = tools.get_dependency_info(dep, "")
if i['ok']:
comps[dep] = cls(dep)
comps[dep].set_dep_modules(comps, [], [], special_dep_targets)
modules = tools.get_sorted_order()
for m in modules:
comps[m] = Module(m)
for m in modules:
i = tools.get_module_info(m, "")
comps[m].set_dep_modules(comps, i['modules'], i['dependencies'],
special_dep_targets)
source_dir = os.path.join(os.path.dirname(sys.argv[0]), '..', '..')
all_modules = [x[0] for x in tools.get_modules(source_dir)]
add_disabled_components(modules, all_modules, comps, "module")
return comps
def get_all_components():
comps = {}
# If RMF is being built as part of IMP, split out its build (rather than
# building it as part of IMP.rmf)
special_dep_targets = {"RMF": RMFDependency}
for dep, cls in special_dep_targets.items():
i = tools.get_dependency_info(dep, "")
if i['ok'] and internal_dep(dep):
comps[dep] = cls(dep)
comps[dep].set_dep_modules(comps, [], [], special_dep_targets)
modules = tools.get_sorted_order()
apps = tools.get_all_configured_applications()
for m in modules:
comps[m] = Module(m)
for a in apps:
comps[a] = Application(a)
for m in modules:
i = tools.get_module_info(m, "")
comps[m].set_dep_modules(comps, i['modules'], i['dependencies'],
special_dep_targets)
for a in apps:
i = tools.get_application_info(a, "")
comps[a].set_dep_modules(comps, i['modules'], i['dependencies'],
special_dep_targets)
source_dir = os.path.join(os.path.dirname(sys.argv[0]), '..', '..')
all_modules= [x[0] for x in tools.get_modules(source_dir)]
all_apps= [x[0] for x in tools.get_applications(source_dir)]
add_disabled_components(modules, all_modules, comps, "module")
add_disabled_components(apps, all_apps, comps, "application")
return comps
def main():
(options, args) = parser.parse_args()
sorted_order = tools.get_sorted_order()
if options.module != "":
if options.module == "kernel":
tools.rewrite("lib/IMP/__init__.py", imp_init)
build_wrapper(
options.module, os.path.join(
options.source, "modules", options.module),
options.source, sorted_order,
tools.get_module_description(
options.source,
options.module,
options.datapath),
os.path.join("swig", "IMP_" + options.module + ".i"),
options.datapath)
else:
tools.rewrite("lib/IMP/__init__.py", imp_init)
for m, path in tools.get_modules(options.source):
build_wrapper(m, path, options.source, sorted_order,
tools.get_module_description(
options.source,
m,
options.datapath),
os.path.join("swig", "IMP_" + m + ".i"),
options.datapath)
def parse_args():
parser = OptionParser(usage="""%prog [options] outdir
Generate HTML coverage reports for IMP C++/Python code in the given directory.
""")
parser.add_option("--report", type="choice",
choices=['python', 'cpp', 'both'], default='both',
help="Generate reports for Python code ('python'), "
"C++ code ('cpp') or both Python and C++ ('both'). "
"Default '%default'.")
parser.add_option("--modules", metavar='STR', default=None,
help="Report only for the given colon-separated list of "
"IMP modules, e.g. 'base:kernel'. By default, "
"coverage for all modules is reported.")
parser.add_option("--dependencies", metavar='STR', default=None,
help="Report only for the given colon-separated list of "
"IMP dependencies, e.g. 'RMF'. By default, coverage "
"for all supported dependencies (currently only "
"RMF) is reported.")
parser.add_option("--exclude", metavar='PCK', default=None,
help="Don't report coverage for any of the components "
"listed in the given summary file (as generated by "
"build_all.py).")
opts, args = parser.parse_args()
if len(args) != 1:
parser.error("wrong number of arguments")
if opts.exclude:
exclude = pickle.load(open(opts.exclude, 'rb'))
else:
exclude = {}
opts.modules = _get_components(opts.modules, tools.get_sorted_order(),
exclude)
opts.dependencies = _get_components(opts.dependencies, ['RMF'], exclude)
return opts, args[0]
def main():
(options, args) = parser.parse_args()
pool = thread_pool.ThreadPool()
ordered = tools.get_sorted_order()
for m in ordered:
#setup_one(m, ordered, options.build_system, options.swig)
pool.add_task(setup_one, m, ordered, options.build_system, options.swig)
pool.wait_completion()
def write_no_ok(module):
new_order = [x for x in tools.get_sorted_order() if x != module]
tools.set_sorted_order(new_order)
tools.rewrite(
os.path.join(
"data",
"build_info",
"IMP." + module),
"ok=False\n",
verbose=False)
def write_no_ok(module):
new_order = [x for x in tools.get_sorted_order() if x != module]
tools.set_sorted_order(new_order)
tools.rewrite(
os.path.join(
"data",
"build_info",
"IMP." + module),
"ok=False\n",
verbose=False)
def main():
(options, args) = parser.parse_args()
sorted_order = tools.get_sorted_order()
if options.module != "":
mf = tools.ModulesFinder(source_dir=options.source,
external_dir=options.build_dir,
module_name=options.module)
module = mf[options.module]
build_wrapper(module, mf, sorted_order,
os.path.join("swig", "IMP_" + module.name + ".i"))
def main():
(options, args) = parser.parse_args()
pool = tools.thread_pool.ThreadPool()
ordered = tools.get_sorted_order()
for m in ordered:
#setup_one(m, ordered, options.build_system, options.swig)
pool.add_task(setup_one, m, ordered, options.build_system,
options.swig)
err = pool.wait_completion()
if err:
sys.stderr.write(err + '\n')
return 1
return 0
def parse_args():
parser = OptionParser(usage="""%prog [options] outdir
Generate HTML coverage reports for IMP C++/Python code in the given directory.
""")
parser.add_option("--report",
type="choice",
choices=['python', 'cpp', 'both'],
default='both',
help="Generate reports for Python code ('python'), "
"C++ code ('cpp') or both Python and C++ ('both'). "
"Default 'both'.")
parser.add_option("--modules",
metavar='STR',
default=None,
help="Report only for the given colon-separated list of "
"IMP modules, e.g. 'base:kernel'. By default, "
"coverage for all modules is reported.")
parser.add_option("--applications",
metavar='STR',
default=None,
help="Report only for the given colon-separated list of "
"IMP applications, e.g. 'foxs:saxs_merge'. By "
"default, coverage for all applications is "
"reported.")
parser.add_option("--dependencies",
metavar='STR',
default=None,
help="Report only for the given colon-separated list of "
"IMP dependencies, e.g. 'RMF'. By default, coverage "
"for all supported dependencies (currently only "
"RMF) is reported.")
parser.add_option("--exclude",
metavar='PCK',
default=None,
help="Don't report coverage for any of the components "
"listed in the given summary file (as generated by "
"build_all.py).")
opts, args = parser.parse_args()
if len(args) != 1:
parser.error("wrong number of arguments")
if opts.exclude:
exclude = pickle.load(open(opts.exclude))
else:
exclude = {}
opts.modules = _get_components(opts.modules, tools.get_sorted_order(),
exclude)
opts.applications = _get_components(
opts.applications, tools.get_all_configured_applications(), exclude)
opts.dependencies = _get_components(opts.dependencies, ['RMF'], exclude)
return opts, args[0]
def main():
(options, args) = parser.parse_args()
sorted_order = tools.get_sorted_order()
if options.module != "":
build_wrapper(
options.module, os.path.join(
options.source, "modules", options.module),
options.source, sorted_order,
tools.get_module_description(
options.source,
options.module,
options.datapath),
os.path.join("swig", "IMP_" + options.module + ".i"),
options.datapath)
def main():
(options, args) = parser.parse_args()
pool = tools.thread_pool.ThreadPool()
ordered = tools.get_sorted_order()
for m in ordered:
#setup_one(m, ordered, options.build_system, options.swig)
pool.add_task(
setup_one,
m,
ordered,
options.build_system,
options.swig)
err = pool.wait_completion()
if err:
sys.stderr.write(err + '\n')
return 1
return 0
def main():
(options, args) = parser.parse_args()
sorted_order = tools.get_sorted_order()
if options.module != "":
if options.module == "kernel":
tools.rewrite("lib/IMP/__init__.py", imp_init)
build_wrapper(
options.module,
os.path.join(options.source, "modules",
options.module), options.source, sorted_order,
tools.get_module_description(options.source, options.module,
options.datapath),
os.path.join("swig", "IMP_" + options.module + ".i"),
options.datapath)
else:
tools.rewrite("lib/IMP/__init__.py", imp_init)
for m, path in tools.get_modules(options.source):
build_wrapper(
m, path, options.source, sorted_order,
tools.get_module_description(options.source, m,
options.datapath),
os.path.join("swig", "IMP_" + m + ".i"), options.datapath)
