def __init__(self, providers):
self.providers = providers
# If there's an application singleton, pass its configurables to the provider. If
# no application, still give provider a chance to handle configuration loading.
config = None
if Application.initialized():
config = Application.instance().config
for provider in providers:
provider.load_config(config=config)
def app_or_module_logger(module_name):
"""
If a global Application is instantiated, grab its logger.
Otherwise, get a logger for the module name.
"""
from traitlets.config import Application
if Application.initialized():
return Application.instance().log
else:
_logger = logging.getLogger(module_name)
# Add a NullHandler to silence warnings about not being
# initialized, per best practice for libraries.
_logger.addHandler(logging.NullHandler())
return _logger
def get_logger(cls) -> logging.Logger:
if cls._LOGGER is None:
app = Application.instance()
cls._LOGGER = logging.getLogger("{!s}.jupyterlab_git".format(
app.log.name))
return cls._LOGGER
def get_logger(cls) -> logging.Logger:
if cls._LOGGER is None:
app = Application.instance()
cls._LOGGER = logging.getLogger("{!s}.mamba_gator".format(
app.log.name))
app.clear_instance()
return cls._LOGGER
def _default_log(self):
if self.parent and self.parent is IPython.get_ipython():
# log to stdout in an IPython session
log = logging.getLogger(f"{__name__}.{self.cluster_id}")
log.setLevel(self.log_level)
handler = logging.StreamHandler(sys.stdout)
log.handlers = [handler]
return log
elif self.parent and getattr(self.parent, 'log', None) is not None:
return self.parent.log
elif Application.initialized():
return Application.instance().log
else:
# set up our own logger
log = logging.getLogger(f"{__name__}.{self.cluster_id}")
log.setLevel(self.log_level)
return log
def _get_app_config(self):
"""Pulls application configuration 'section' relative to current class."""
app_config = {}
parent_app = Application.instance()
if parent_app:
# Collect config relative to our class instance.
app_config = parent_app.config.get(self.__class__.__name__,
{}).copy()
return app_config
def set_engine_logger():
'''Updates EMA logging on the engines with an EngineLoggerAdapter
This adapter injects EMA as a topic into all messages
'''
logger = Application.instance().log
logger.setLevel(ema_logging.DEBUG)
for handler in logger.handlers:
if isinstance(handler, EnginePUBHandler): # @UndefinedVariable
handler.setLevel(ema_logging.DEBUG)
adapter = EngingeLoggerAdapter(logger, SUBTOPIC)
ema_logging._logger = adapter
ema_logging.debug('updated logger')
def set_engine_logger():
'''Updates EMA logging on the engines with an EngineLoggerAdapter
This adapter injects EMA as a topic into all messages
'''
logger = Application.instance().log
logger.setLevel(ema_logging.DEBUG)
for handler in logger.handlers:
if isinstance(handler, EnginePUBHandler): # @UndefinedVariable
handler.setLevel(ema_logging.DEBUG)
adapter = EngingeLoggerAdapter(logger, SUBTOPIC)
ema_logging._logger = adapter
ema_logging.debug('updated logger')
def log(self):
"""use the IPython log by default, falling back on tornado's logger"""
if Application.initialized():
return Application.instance().log
else:
return app_log
def log():
if Application.initialized():
return Application.instance().log
else:
return app_log
)
from biokbase.narrative.common.util import kbase_env
import urllib
import tornado.log
from traitlets.config import Application
from biokbase.auth import (
get_user_info,
init_session_env
)
from biokbase.narrative.common.url_config import URLS
HTTPError = web.HTTPError
app_log = tornado.log.app_log # alias
if Application.initialized:
app_log = Application.instance().log
g_log = get_logger("biokbase.narrative")
auth_cookie_name = "kbase_session"
def _init_session(request, cookies):
client_ip = request.remote_ip
http_headers = request.headers
ua = http_headers.get('User-Agent', 'unknown')
auth_cookie = cookies.get(auth_cookie_name)
if auth_cookie is not None:
token = urllib.unquote(auth_cookie.value)
else:
raise web.HTTPError(status_code=401,
log_message='No auth cookie, denying access',
reason='Authorization required for Narrative access')
def log():
if Application.initialized():
return Application.instance().log
else:
return app_log
def log(self):
"""use the IPython log by default, falling back on tornado's logger"""
if Application.initialized():
return Application.instance().log
else:
return app_log
