def traits_view(self):
w_view = 350 if is_display_small() else 480
parameters_group = VGroup(
Item('_'),
HGroup(
VGroup(
Spring(),
Item('handler.omega_hinton_diagram',
style='custom',
resizable=False,
show_label=False,
width=w_view), Spring()), Spring(),
VGroup(Spring(), Item('handler.view_omega', show_label=False),
Spring())), Spring(), Item('_'), Spring(),
HGroup(
VGroup(
UItem('handler.theta_views'),
UItem('handler.theta_view',
style='custom',
resizable=False,
width=w_view), Spring()), Spring(),
VGroup(Spring(), UItem('handler.view_theta'), Spring())))
body = VGroup(Include('info_group'), parameters_group)
traits_view = View(body, buttons=[OKButton], resizable=True)
return traits_view
def default_traits_view(self):
view = View(
Item('scene',
editor=SceneEditor(scene_class=MayaviScene),
height=600,
width=600,
show_label=False),
HGroup(
Item("current_time", label="Date"), Item(" "),
Item("num_of_shown_days", label="Show"),
Item("_home_button", show_label=False),
Item("_selected_source_name", show_label=False),
Item("_selected_event_name",
editor=CheckListEditor(name='_selected_events_list'),
show_label=False), Item("_back1", show_label=False),
Item(
"Relative_Start_Day",
show_label=False,
editor=RangeEditor(mode="slider",
low_name="_low_start_day_number",
high_name="_high_start_day_number"),
tooltip=
"Shows total number of days in data set and the currently selected day",
springy=True,
full_size=True), Item("_forward1", show_label=False),
Item("move_step", show_label=False),
Item("play_button", label='Play')),
title="Visualization of Events",
resizable=True)
view.resizable = True
return view
class VisibleWhenProblem(HasTraits):
which = Enum('one', 'two')
on = Bool
txt = Str
onoff_group = HGroup(
VGroup(Item('on', resizable=False, width=-100, height=-70),
show_left=False,
show_border=True,
visible_when='which == "one"'), )
text_group = VGroup(
Item('txt', width=-_TEXT_WIDTH, height=-_TEXT_HEIGHT),
visible_when='which == "two"',
show_border=True,
)
traits_view = View(Item('which'),
VGroup(
Include('onoff_group'),
Include('text_group'),
),
resizable=True,
buttons=['OK', 'Cancel'])
class VisibleWhenProblem(HasTraits):
which = Enum("one", "two")
on = Bool()
txt = Str()
onoff_group = HGroup(
VGroup(
Item("on", resizable=False, width=-100, height=-70),
show_left=False,
show_border=True,
visible_when='which == "one"',
)
)
text_group = VGroup(
Item("txt", width=-_TEXT_WIDTH, height=-_TEXT_HEIGHT),
visible_when='which == "two"',
show_border=True,
)
traits_view = View(
Item("which"),
VGroup(Include("onoff_group"), Include("text_group")),
resizable=True,
buttons=["OK", "Cancel"],
)
def traits_view(self):
ident_grp = VGroup(Item('irradiation', editor=EnumEditor(name='irradiations')),
Item('level', editor=EnumEditor(name='levels')),
Item('identifier', editor=EnumEditor(name='identifiers')),
Item('aliquot_offset'),
Item('step_offset'),
Item('dry',
tooltip='Do a dry run. Do not save changes to database'),
Item('use_secondary', label='Use Secondary DB',
tooltip='Also modify the secondary db, e.g. a Mass Spec db.'))
ogrp = UItem('analyses', editor=TabularEditor(adapter=AnalysisAdapter(),
editable=False))
ngrp = UItem('modified_analyses', editor=TabularEditor(adapter=AnalysisAdapter(),
refresh='refresh',
multi_select=True,
selected='selected'))
agrp = HGroup(ogrp, ngrp)
v = View(VGroup(ident_grp, agrp),
resizable=True,
width=600,
kind='livemodal',
title='Edit Analyses',
buttons=['OK', 'Cancel'])
return v
class HResizeDialog(HasTraits):
txt = Str('hallo')
traits_view = View(HGroup(Item('txt', width=_TXT_WIDTH, resizable=True), ),
width=_DIALOG_WIDTH,
height=_DIALOG_HEIGHT,
resizable=True)
def traits_view(self):
self.statistics_name = "Cohen's Kappa"
traits_view = View(VGroup(
HGroup(Item("statistics_name", show_label=False),
Item("info_button", show_label=False)),
Spring(),
HGroup(
Spring(),
Item("stats_view",
style="custom",
show_label=False,
width=300,
resizable=False), Spring()),
),
width=400,
resizable=True)
return traits_view
def _get_toggle_group(self):
g = HGroup(
# UItem('global_fit',editor=EnumEditor(name='fit_types')),
# UItem('global_error_type', editor=EnumEditor(name='error_types')),
UItem('show_all_button',
editor=ButtonEditor(label_value='show_all_label')),
UItem('use_all_button'))
return g
def traits_view(self):
v = View(
HGroup(UItem('use'), Item('center'), Item('threshold'),
UItem('color')))
return v
#============= EOF =============================================
def test_horizontal_layout(self):
# layout
view = View(HGroup(
Item("txt1"),
Item("txt2"),
))
with reraise_exceptions(), \
create_ui(MultipleTrait(), ui_kwargs=dict(view=view)):
pass
def traits_view(self):
contour_grp = VGroup(Item('color_map_name',
label='Color Map',
editor=EnumEditor(values=sorted(color_map_name_dict.keys()))),
Item('levels'),
visible_when='plot_kind=="Contour"')
monitor_grp=Item('monitor', editor=EnumEditor(name='monitors'))
v = View(
VGroup(HGroup(UItem('calculate_button'),
UItem('data_source', editor=EnumEditor(values=['database', 'file'])),
monitor_grp),
HGroup(Item('group_positions'), Item('object.monitor.sample', style='readonly',label='Sample')),
HGroup(UItem('plot_kind'),
Item('model_kind', label='Fit Model',
editor=EnumEditor(values=['Bowl', 'Plane']))),
# UItem('plot_kind', editor=EnumEditor(values=['Contour', 'Hole vs J']))),
contour_grp))
return v
class HResizeDialog(HasTraits):
txt = Str("hallo")
traits_view = View(
HGroup(Item("txt", width=_TXT_WIDTH, resizable=True)),
width=_DIALOG_WIDTH,
height=_DIALOG_HEIGHT,
resizable=True,
)
def traits_view(self):
l = VGroup(UItem('low_post_time'),
UItem('low_post_date', style='custom'))
h = VGroup(UItem('high_post_time'),
UItem('high_post_date', style='custom'))
v = okcancel_view(Item('pad', label='Pad (hrs)'),
HGroup(l, h),
width=500)
return v
def traits_view(self):
contour_grp = HGroup(Item('color_map_name',
label='Color Map',
editor=EnumEditor(values=sorted(color_map_name_dict.keys()))),
Item('levels'),
Item('marker_size'),
visible_when='plot_kind=="Contour"')
monitor_grp = Item('monitor', editor=EnumEditor(name='monitors'))
v = View(
VGroup(HGroup(UItem('calculate_button'),
UItem('data_source', editor=EnumEditor(values=['database', 'file'])),
monitor_grp),
HGroup(Item('save_mean_j', label='Save Mean J'),
Item('auto_clear_cache', label='Auto Clear Cache')),
Item('mean_j_error_type', label='Mean J Error'),
HGroup(Item('use_weighted_fit'),
Item('use_monte_carlo'),
Item('monte_carlo_ntrials',
enabled_when='object.use_monte_carlo')),
Item('predicted_j_error_type', label='Predicted J Error',
enabled_when='not (object.use_weighted_fit or object.use_monte_carlo)'),
HGroup(Item('group_positions'),
Item('object.monitor.sample',
style='readonly', label='Sample')),
Item('show_labels',
label='Display Labels',
tooltip='Display hole labels on plot'),
HGroup(UItem('plot_kind'),
Item('model_kind', label='Fit Model',
editor=EnumEditor(values=['Bowl', 'Plane']))),
# UItem('plot_kind', editor=EnumEditor(values=['Contour', 'Hole vs J']))),
contour_grp))
return v
def traits_view(self):
if is_display_small():
w_view = 350
else:
w_view = 450
info_group = VGroup(Item('_name',
label='Annotations name:',
style='readonly',
padding=0),
VGrid(Item('_nclasses',
label='Number of classes:',
style='readonly',
width=10),
Item('_labels',
label='Labels:',
style='readonly'),
Item('_nannotators',
label='Number of annotators:',
style='readonly',
width=10),
Item('_nitems',
label='Number of items:',
style='readonly'),
padding=0),
padding=0)
body = VGroup(
info_group,
Item('_'),
HGroup(
VGroup(
Spring(),
Item('frequency_plot',
style='custom',
resizable=False,
show_label=False,
width=w_view), Spring()), Spring(),
VGroup(
Spring(),
Item('edit_data',
enabled_when='annotations_are_defined',
show_label=False),
Item('save_data',
enabled_when='annotations_are_defined',
show_label=False), Spring())),
Spring(),
Item('_'),
)
traits_view = View(body)
return traits_view
def _get_auto_group(self):
return VGroup(
HGroup(
icon_button_editor(
'plot_button',
'refresh',
tooltip='Replot the isotope evolutions. '
'This may take awhile if many analyses are selected'),
icon_button_editor('save_event',
'database_save',
tooltip='Save fits to database'),
Item(
'auto_update',
label='Auto Plot',
tooltip=
'Should the plot refresh after each change ie. "fit" or "show". '
'It is not advisable to use this option with many analyses'
)),
HGroup(
UItem('global_fit', editor=EnumEditor(name='fit_types')),
UItem('global_error_type',
editor=EnumEditor(name='error_types'))))
def traits_view(self):
l = VGroup(UItem('low_post_time'),
UItem('low_post_date', style='custom'))
h = VGroup(UItem('high_post_time'),
UItem('high_post_date', style='custom'))
v = View(UItem('pad'),
HGroup(l, h),
kind='livemodal',
width=500,
resizable=True,
buttons=['OK', 'Cancel'])
return v
def traits_view(self):
db_table_editor = TableEditor(
columns=[
ObjectColumn(name='data_id',
label='Annotations ID',
editable=False,
width=0.65),
ObjectColumn(name='model_name', editable=False, width=0.20),
ObjectColumn(name='value',
label='Log likelihood',
editable=False,
width=0.15)
],
search=SearchIDFilter(),
editable=True,
deletable=True,
configurable=False,
sortable=True,
sort_model=False,
auto_size=False,
orientation='vertical',
show_toolbar=True,
selection_mode='row',
on_dclick=self.forward_to_model_data_view,
on_select=self.track_selection)
traits_view = View(
VGroup(
Item(
'results_table',
editor=db_table_editor,
show_label=False,
),
HGroup(
Item('open_to_main', show_label=False, width=100),
Item('delete_action',
show_label=False,
enabled_when='current_selection is not None',
width=100), Spring(),
Item('close_view', show_label=False, width=100)),
),
title='pyAnno results database',
width=800,
height=400,
resizable=True,
#buttons = [ 'OK' ],
kind='live')
return traits_view
class HResizeTestDialog(HasTraits):
""" Dialog with checkbox and text elements and labels on the right.
We test the separation between element and label in HGroups.
"""
bool_item = Bool(True)
txt_item = Str
traits_view = View(VGroup(
HGroup(Item('bool_item', springy=True), show_left=False),
VGroup(Item('txt_item', resizable=True), show_left=False),
),
width=_DIALOG_WIDTH,
height=100,
resizable=True)
class GuiDefine(HasTraits):
name = Str()
value = Str()
traits_view = View(
HGroup(
Item('name',
width=200,
label='#define',
),
Item('value',
width=200,
show_label=False,
),
),
)
def traits_view(self):
a = UItem('_tabs',
width=-200,
editor=myTabularEditor(adapter=CatergoryAdapter(),
row_height=32,
editable=False,
horizontal_lines=False,
selected='_selected'))
b = UItem('_selected', style='custom')
v = okcancel_view(HGroup(a, b),
height=500,
width=800,
title='Preferences')
return v
def _get_auto_group(self):
return HGroup(
icon_button_editor(
'plot_button',
'chart_curve_go',
tooltip='Replot the isotope evolutions. '
'This may take awhile if many analyses are selected'),
icon_button_editor('save_event',
'database_save',
tooltip='Save fits to database'), spring,
Item(
'auto_update',
label='Auto Plot',
tooltip=
'Should the plot refresh after each change ie. "fit" or "show". '
'It is not advisable to use this option with many analyses'))
def traits_view(self):
a = UItem('_tabs', width=-200,
editor=myTabularEditor(adapter=CatergoryAdapter(),
row_height=32,
editable=False,
horizontal_lines=False,
selected='_selected'))
b = UItem('_selected', style='custom')
v = View(HGroup(a, b),
height=500,
width=800,
kind='livemodal',
title='Preferences',
resizable=True,
buttons=['OK', 'Cancel'])
return v
def traits_view(self):
return View(
HGroup(
Item('age_kind', style='readonly', show_label=False),
Item('display_age',
format_func=lambda x: floatfmt(x, 3),
label='Age',
style='readonly'),
Item('display_age_err',
label=u'\u00b11\u03c3',
format_func=lambda x: floatfmt(x, 4),
style='readonly'),
Item('display_age_units', style='readonly', show_label=False),
Item('mswd',
format_func=lambda x: floatfmt(x, 2),
style='readonly',
label='MSWD')))
def traits_view(self):
traits_view = View(
VGroup(
Item('annotator_idx',
label='Annotator index',
editor=RangeEditor(mode='spinner',
low=0, high=self.theta.shape[0]-1,
),
),
HGroup(
Item('theta_j_view',
style='custom',
show_label=False),
),
),
width = 500,
height = 400,
resizable = True
)
return traits_view
class ScopeWnd(AbstractWnd):
pin = PinTrait('analog')
interval = Time()
@property
def conf(self):
return dict(pin=self.pin,
interval=self.interval)
def plot(self, data, fig):
time_plot(data, fig)
def measure(self, conf, stop_condition):
return measure(self.conf, stop_condition)
view = View(
HGroup(
'start',
'stop',
'auto_update',
readonly('alive', checkbox=True),
),
# instance('tester', view=View(
slider('interval', 0.1, 10),
'pin',
# ),
# ),
Group(
Item('figure',
editor=MPLFigureEditor(),
show_label=False
),
),
width=600,
height=300,
resizable=True)
class ProjectInfoUI(cmp.project.ProjectInfo):
"""Class that extends the :class:`ProjectInfo` with graphical components.
It supports graphically the setting of all processing properties / attributes
of an :class:`ProjectInfo` instance.
Attributes
-----------
creation_mode : traits.Enum
Mode for loading the dataset. Valid values are
'Load BIDS dataset', 'Install Datalad BIDS dataset'
install_datalad_dataset_via_ssh : traits.Bool
If set to True install the datalad dataset from a remote server
via ssh.(True by default)
ssh_user : traits.Str
Remote server username.
(Required if ``install_datalad_dataset_via_ssh`` is True)
ssh_pwd <traits.Password>
Remote server password.
(Required if ``install_datalad_dataset_via_ssh`` is True)
ssh_remote : traits.Str
Remote server IP or URL.
(Required if ``install_datalad_dataset_via_ssh`` is True)
datalad_dataset_path : traits.Directory
Path to the datalad dataset on the remote server.
(Required if ``install_datalad_dataset_via_ssh`` is True)
summary_view_button : traits.ui.Button
Button that shows the pipeline processing summary table
pipeline_processing_summary_view : traits.ui.VGroup
TraitsUI VGroup that contains ``Item('pipeline_processing_summary')``
dataset_view : traits.ui.View
TraitsUI View that shows a summary of project settings and
modality available for a given subject
traits_view : QtView
TraitsUI QtView that includes the View 'dataset_view'
create_view : traits.ui.View
Dialog view to create a BIDS Dataset
subject_view : traits.ui.View
Dialog view to select of subject
subject_session_view : traits.ui.View
Dialog view to select the subject session
dmri_bids_acq_view : traits.ui.View
Dialog view to select the diffusion acquisition model
anat_warning_view : traits.ui.View
View that displays a warning message regarding
the anatomical T1w data
anat_config_error_view : traits.ui.View
Error view that displays an error message regarding
the configuration of the anatomical pipeline
dmri_warning_view : traits.ui.View
View that displays a warning message regarding
the diffusion MRI data
dmri_config_error_view : traits.ui.View
View that displays an error message regarding
the configuration of the diffusion pipeline
fmri_warning_view : traits.ui.View
View that displays a warning message regarding
the functional MRI data
fmri_config_error_view : traits.ui.View
View that displays an error message regarding
the configuration of the fMRI pipeline
open_view : traits.ui.View
Dialog view to load a BIDS Dataset
anat_select_config_to_load : traits.ui.View
Dialog view to load the configuration file of the anatomical pipeline
diffusion_imaging_model_select_view : traits.ui.View
Dialog view to select the diffusion acquisition model
dmri_select_config_to_load : traits.ui.View
Dialog view to load the configuration file of the diffusion MRI pipeline
fmri_select_config_to_load : traits.ui.View
Dialog view to load the configuration file of the fMRI pipeline
"""
creation_mode = Enum("Load BIDS dataset", "Install Datalad BIDS dataset")
install_datalad_dataset_via_ssh = Bool(True)
ssh_user = String("remote_username")
ssh_pwd = Password("")
ssh_remote = String("IP address/ Machine name")
datalad_dataset_path = Directory(
"/shared/path/to/existing/datalad/dataset")
anat_runs = List()
anat_run = Enum(values="anat_runs")
dmri_runs = List()
dmri_run = Enum(values="dmri_runs")
fmri_runs = List()
fmri_run = Enum(values="fmri_runs")
summary_view_button = Button("Pipeline processing summary")
pipeline_processing_summary_view = VGroup(
Item("pipeline_processing_summary"))
dataset_view = VGroup(
VGroup(
HGroup(
Item(
"base_directory",
width=-0.3,
style="readonly",
label="",
resizable=True,
),
Item(
"number_of_subjects",
width=-0.3,
style="readonly",
label="Number of participants",
resizable=True,
),
"summary_view_button",
),
label="BIDS Dataset",
),
spring,
HGroup(
Group(
Item("subject",
style="simple",
show_label=True,
resizable=True)),
Group(
Item("subject_session",
style="simple",
label="Session",
resizable=True),
visible_when='subject_session!=""',
),
springy=True,
),
spring,
Group(
Item("t1_available", style="readonly", label="T1", resizable=True),
HGroup(
Item(
"dmri_available",
style="readonly",
label="Diffusion",
resizable=True,
),
Item(
"diffusion_imaging_model",
label="Model",
resizable=True,
enabled_when="dmri_available",
),
),
Item("fmri_available",
style="readonly",
label="BOLD",
resizable=True),
label="Modalities",
),
spring,
Group(
Item(
"anat_last_date_processed",
label="Anatomical pipeline",
style="readonly",
resizable=True,
enabled_when="t1_available",
),
Item(
"dmri_last_date_processed",
label="Diffusion pipeline",
style="readonly",
resizable=True,
enabled_when="dmri_available",
),
Item(
"fmri_last_date_processed",
label="fMRI pipeline",
style="readonly",
resizable=True,
enabled_when="fmri_available",
),
label="Last date processed",
),
spring,
Group(Item("number_of_cores", resizable=True),
label="Processing configuration"),
"550",
spring,
springy=True,
)
traits_view = QtView(Include("dataset_view"))
create_view = View(
Item("creation_mode", style="custom"),
Group(
Group(
Item("base_directory", label="BIDS Dataset"),
visible_when='creation_mode=="Load BIDS dataset"',
),
Group(
Item("install_datalad_dataset_via_ssh"),
visible_when='creation_mode=="Install Datalad/BIDS dataset"',
),
Group(
Item(
"ssh_remote",
label="Remote ssh server",
visible_when="install_datalad_dataset_via_ssh",
),
Item(
"ssh_user",
label="Remote username",
visible_when="install_datalad_dataset_via_ssh",
),
Item(
"ssh_pwd",
label="Remote password",
visible_when="install_datalad_dataset_via_ssh",
),
Item(
"datalad_dataset_path",
label="Datalad/BIDS Dataset Path/URL to be installed",
),
Item("base_directory", label="Installation directory"),
visible_when='creation_mode=="Install Datalad/BIDS dataset"',
),
),
kind="livemodal",
title="Data creation: BIDS dataset selection",
# style_sheet=style_sheet,
width=modal_width,
buttons=["OK", "Cancel"],
)
subject_view = View(
Group(Item("subject", label="Selected Subject")),
kind="modal",
title="Subject and session selection",
# style_sheet=style_sheet,
width=modal_width,
buttons=["OK", "Cancel"],
)
subject_session_view = View(
Group(
Item("subject", style="readonly", label="Selected Subject"),
Item("subject_session", label="Selected Session"),
),
kind="modal",
title="Session selection",
# style_sheet=style_sheet,
width=modal_width,
buttons=["OK", "Cancel"],
)
dmri_bids_acq_view = View(
Group(Item("dmri_bids_acq", label="Selected model"), ),
kind="modal",
title="Selection of diffusion acquisition model",
# style_sheet=style_sheet,
width=modal_width,
buttons=["OK", "Cancel"],
)
anat_warning_view = View(
Group(Item("anat_warning_msg", style="readonly", show_label=False), ),
title="Warning : Anatomical T1w data",
kind="modal",
width=modal_width,
# style_sheet=style_sheet,
buttons=["OK", "Cancel"],
)
anat_config_error_view = View(
Group(
Item("anat_config_error_msg", style="readonly",
show_label=False), ),
title="Error",
kind="modal",
width=modal_width,
# style_sheet=style_sheet,
buttons=["OK", "Cancel"],
)
dmri_warning_view = View(
Group(Item("dmri_warning_msg", style="readonly", show_label=False), ),
title="Warning : Diffusion MRI data",
kind="modal",
width=modal_width,
# style_sheet=style_sheet,
buttons=["OK", "Cancel"],
)
dmri_config_error_view = View(
Group(
Item("dmri_config_error_msg", style="readonly",
show_label=False), ),
title="Error",
kind="modal",
width=modal_width,
# style_sheet=style_sheet,
buttons=["OK", "Cancel"],
)
fmri_warning_view = View(
Group(Item("fmri_warning_msg", style="readonly", show_label=False), ),
title="Warning : fMRI data",
kind="modal",
width=modal_width,
# style_sheet=style_sheet,
buttons=["OK", "Cancel"],
)
fmri_config_error_view = View(
Group(
Item("fmri_config_error_msg", style="readonly",
show_label=False), ),
title="Error",
kind="modal",
width=modal_width,
# style_sheet=style_sheet,
buttons=["OK", "Cancel"],
)
open_view = View(
Item("creation_mode", label="Mode"),
Group(
Item("install_datalad_dataset_via_ssh"),
Item(
"ssh_remote",
label="Remote ssh server",
visible_when="install_datalad_dataset_via_ssh",
),
Item(
"ssh_user",
label="Remote username",
visible_when="install_datalad_dataset_via_ssh",
),
Item(
"ssh_pwd",
label="Remote password",
visible_when="install_datalad_dataset_via_ssh",
),
Item(
"datalad_dataset_path",
label="Datalad/BIDS Dataset Path/URL to be installed",
),
Item("base_directory", label="Installation directory"),
visible_when='creation_mode=="Install Datalad BIDS dataset"',
),
Group(
Item("base_directory", label="BIDS Dataset"),
visible_when='creation_mode=="Load BIDS dataset"',
),
kind="livemodal",
title="BIDS Dataset Creation/Loading",
# style_sheet=style_sheet,
width=600,
height=250,
buttons=["OK", "Cancel"],
)
anat_select_config_to_load = View(
Group(
Item("anat_config_to_load_msg", style="readonly",
show_label=False),
Item(
"anat_config_to_load",
style="custom",
editor=EnumEditor(name="anat_available_config"),
show_label=False,
),
),
title="Select configuration for anatomical pipeline",
kind="modal",
width=modal_width,
# style_sheet=style_sheet,
buttons=["OK", "Cancel"],
)
anat_custom_map_view = View(
Group(
Item(
"anat_custom_last_stage",
editor=EnumEditor(name="anat_stage_names"),
style="custom",
show_label=False,
), ),
title="Select until which stage to process the anatomical pipeline.",
kind="modal",
width=modal_width,
# style_sheet=style_sheet,
buttons=["OK", "Cancel"],
)
diffusion_imaging_model_select_view = View(
Group(Item("diffusion_imaging_model",
label="Diffusion MRI modality"), ),
title="Please select diffusion MRI modality",
kind="modal",
width=modal_width,
buttons=["OK", "Cancel"],
)
dmri_select_config_to_load = View(
Group(
Item("dmri_config_to_load_msg", style="readonly",
show_label=False), ),
Item(
"dmri_config_to_load",
style="custom",
editor=EnumEditor(name="dmri_available_config"),
show_label=False,
),
title="Select configuration for diffusion pipeline",
kind="modal",
width=modal_width,
# style_sheet=style_sheet,
buttons=["OK", "Cancel"],
)
dmri_custom_map_view = View(
Group(
Item(
"dmri_custom_last_stage",
editor=EnumEditor(name="dmri_stage_names"),
style="custom",
show_label=False,
), ),
title="Select until which stage to process the diffusion pipeline.",
kind="modal",
width=modal_width,
# style_sheet=style_sheet,
buttons=["OK", "Cancel"],
)
fmri_select_config_to_load = View(
Group(
Item("fmri_config_to_load_msg", style="readonly",
show_label=False), ),
Item(
"fmri_config_to_load",
style="custom",
editor=EnumEditor(name="fmri_available_config"),
show_label=False,
),
title="Select configuration for fMRI pipeline",
kind="modal",
width=modal_width,
# style_sheet=style_sheet,
buttons=["OK", "Cancel"],
)
fmri_custom_map_view = View(
Group(
Item(
"fmri_custom_last_stage",
editor=EnumEditor(name="fmri_stage_names"),
style="custom",
show_label=False,
), ),
title="Select until which stage to process the fMRI pipeline.",
kind="modal",
width=modal_width,
# style_sheet=style_sheet,
buttons=["OK", "Cancel"],
)
def _summary_view_button_fired(self):
self.configure_traits(view="pipeline_processing_summary_view")
class BoardWrapper(HasTraits):
pins = List(PinWrapper)
digital_pins = List(PinWrapper)
analog_pins = List(PinWrapper)
defines = List(GuiDefine)
port_type = Enum('serial',
[
'none',
'serial',
]
)
serial_device = Enum(_auto_detect_serial_unix())
baudrate = Int(115200)
sleep_after_connect = Int(2)
timeout = Int(1)
uptime = Float()
tree = None
vcc = Float()
avr_name = Str()
arduino_version = Str()
firmware_build_time = Str()
gcc_version = Str()
libc_version = Str()
libc_date = Str()
connected = Bool(False)
connect = Button()
disconnect = Button()
def _connect_fired(self):
try:
connection = SerialManager(device=self.serial_device,
baudrate=self.baudrate,
sleep_after_connect=self.sleep_after_connect,
timeout=self.timeout)
connection.open()
print ArduinoApi(connection=connection).millis()
except Exception as e:
traceback.print_exc()
message(traceback.format_exc(), buttons=['OK'])
return
a = self.tree = ArduinoTree(connection=connection)
d = a.define.as_dict
s = [GuiDefine(name=k, value=str(v)) for k, v in d.items()]
s.sort(key=lambda x: x.name)
self.defines = s
self.digital_pins = [PinWrapper(pin=a.pin.get(x))
for x in a.pin.names_digital]
self.analog_pins = [PinWrapper(pin=a.pin.get(x))
for x in a.pin.names_analog]
self.pins = self.digital_pins + self.analog_pins
fw = a.firmware_info
self.arduino_version = fw.get('arduino_version')
self.firmware_build_time = str(fw.get('compile_datetime'))
self.avr_name = fw.get('avr_name')
self.gcc_version = fw.get('gcc_version')
self.libc_version = fw.get('libc_version')
self.libc_date = str(fw.get('libc_date'))
self.connected = True
def _disconnect_fired(self):
self.digital_pins = []
self.analog_pins = []
self.pins = []
self.defines = []
self.avr_name = ''
self.arduino_version = ''
self.firmware_build_time = ''
self.gcc_version = ''
self.libc_version = ''
self.libc_date = ''
self.tree.connection.close()
del self.tree
self.tree = None
self.connected = False
update_interval = Int(1000, desc='interval in msec')
update_enable = Bool(True)
def update(self):
if self.update_enable and self.connected and self.tree:
for x in self.pins:
x.update()
self.uptime = self.tree.api.millis() / 1000.0
self.vcc = self.tree.vcc.read() if self.tree.vcc else -1
time.sleep(self.update_interval / 1000.0)
traits_view = View(
Tabbed(
Group(
HGroup(
Group(
button('connect', enabled_when='not connected'),
button('disconnect', enabled_when='connected'),
Item(
'port_type', enabled_when='not connected', width=300,
),
Group(
'serial_device',
'baudrate',
'sleep_after_connect',
'timeout',
visible_when='port_type=="serial"',
enabled_when='not connected',
),
),
Group(
'avr_name',
'arduino_version',
'firmware_build_time',
'gcc_version',
'libc_version',
'libc_date',
# 'baudrate',
# 'sleep_after_connect',
# visible_when='port_type=="serial"',
springy=True,
),
),
label='connection',
),
Group(
'uptime',
'vcc',
label='misc',
),
Item(name='digital_pins',
editor=ListEditor(
style='custom',
),
style='readonly',
show_label=False,
),
Item(name='analog_pins',
editor=ListEditor(
style='custom',
),
style='readonly',
show_label=False,
),
Group(
'update_enable',
Item(name='update_interval',
editor=RangeEditor(
mode='slider',
low=1,
high=1000,
),
style='custom',
),
label='settings',
),
Item('defines',
show_label=False,
editor=ListEditor(
# auto_size=False,
# editable=False,
# configurable=False,
style='custom',
),
style='readonly',
)
),
width=800,
height=600,
buttons=['Undo', 'Revert', 'OK', 'Cancel'],
kind='live',
resizable=True,
handler=Handler(),
)
def right_group():
return VGroup(
HGroup(UItem('right_message', style='readonly'),
UItem('right_date', style='readonly')),
UItem('right', style='custom', editor=TextEditor(read_only=True)))
class EventSelectionDialog(HasTraits):
source_class_label = String("Select Event Source Classes")
severity_level_label = String("Select Event Severity Levels")
search = String(regex="^[_a-zA-Z0-9\*\.\$\^\?\s]*$")
shown_event_names_list = String(regex="[_a-zA-Z0-9\*\.\$\^\?\n]*")
quit_button = Button('Quit')
query_button = Button('Run Query...')
period_start_date = DelegatesTo("query_object")
period_end_date = DelegatesTo("query_object")
selected_list_of_event_severity_levels = DelegatesTo("query_object")
list_of_event_severity_levels = DelegatesTo("query_object")
selected_list_of_source_classes = DelegatesTo("query_object")
list_of_source_classes = DelegatesTo("query_object")
query_object = Instance(EventSelectionQuery)
spring = Spring
help_text = (
"Search engine like queries using alphanumeric characters and '_'and '.' \n"
+ "Space indicate OR-separated queries\n" +
"? = match any character\n" + "* = any number of characters\n" +
"^ = match beginning\n"
"$ = match end")
view = View(
Group(
VGroup(
HGroup(Item("period_start_date", label="Period"),
Item("period_end_date", show_label=False),
Item("", resizable=True, width=1.0, show_label=False),
HGroup(Item('quit_button', show_label=False),
Item('query_button', show_label=False)),
springy=True),
HGroup(
VGroup(
HGroup(
Item("severity_level_label",
show_label=False,
style="readonly")),
Item("selected_list_of_event_severity_levels",
editor=CheckListEditor(
name="list_of_event_severity_levels"),
style="custom",
show_label=False)),
VGroup(
HGroup(
Item("source_class_label",
show_label=False,
style="readonly")),
Item("selected_list_of_source_classes",
editor=CheckListEditor(
name="list_of_source_classes"),
style="custom",
show_label=False)),
# springy=True
),
show_border=True),
Item("_"),
VGroup(Item("search",
editor=HistoryEditor(auto_set=True),
show_label=False,
width=1.0,
tooltip=help_text),
Item(
name='shown_event_names_list',
style='readonly',
resizable=True,
show_label=False,
),
scrollable=True,
show_border=True),
orientation='vertical',
),
title='Select Events to Visualize',
dock='horizontal',
resizable=True,
width=.5,
height=.7)
def __init__(self, query_object, **kwargs):
'''
Creates a dialog window for selecting date period, source classes and event severity levels/types.
:param query_object:
:return:
'''
assert isinstance(query_object, EventSelectionQuery)
self.shown_event_names_list = "\n".join(
list(query_object.list_of_event_names))
self.query_object = query_object
self.query_start_date = query_object.period_start_date
self.query_end_date = query_object.period_end_date
HasTraits.__init__(self, **kwargs)
def _search_changed(self):
'''
Matches search query to the event names.
:return:
'''
query_st = str(self.search).strip()
if re.match("^[_a-zA-Z0-9\*\.\$\^\?\s]*$", query_st) is None:
return
query_st = query_st.replace(".", "\.")
query_st = query_st.replace("*", ".*")
query_st = query_st.replace("?", ".?")
queries = query_st.split()
print self.search, query_st, queries,
if len(queries) == 0:
queries = [""]
result = [
s for s in list(self.query_object.list_of_event_names)
for q in queries if re.search((".*%s.*" % q), s) is not None
]
self.query_object.selected_list_of_event_names = result
self.shown_event_names_list = "\n".join(result)
print len(self.shown_event_names_list)
def _save_search(self):
# A bug fix, stops the clearing of the search expression
tmp = self.search
self.search = " "
self.search = tmp
print len(self.query_object.selected_list_of_event_names)
def _query_button_changed(self):
self._save_search()
self.query_object.execute_query()
def _quit_button_changed(self):
self._save_search()
sys.exit(0)