def traits_view(self):
ident_grp = VGroup(Item('irradiation', editor=EnumEditor(name='irradiations')),
Item('level', editor=EnumEditor(name='levels')),
Item('identifier', editor=EnumEditor(name='identifiers')),
Item('aliquot_offset'),
Item('step_offset'),
Item('dry',
tooltip='Do a dry run. Do not save changes to database'),
Item('use_secondary', label='Use Secondary DB',
tooltip='Also modify the secondary db, e.g. a Mass Spec db.'))
ogrp = UItem('analyses', editor=TabularEditor(adapter=AnalysisAdapter(),
editable=False))
ngrp = UItem('modified_analyses', editor=TabularEditor(adapter=AnalysisAdapter(),
refresh='refresh',
multi_select=True,
selected='selected'))
agrp = HGroup(ogrp, ngrp)
v = View(VGroup(ident_grp, agrp),
resizable=True,
width=600,
kind='livemodal',
title='Edit Analyses',
buttons=['OK', 'Cancel'])
return v
def traits_view(self):
contour_grp = HGroup(Item('color_map_name',
label='Color Map',
editor=EnumEditor(values=sorted(color_map_name_dict.keys()))),
Item('levels'),
Item('marker_size'),
visible_when='plot_kind=="Contour"')
monitor_grp = Item('monitor', editor=EnumEditor(name='monitors'))
v = View(
VGroup(HGroup(UItem('calculate_button'),
UItem('data_source', editor=EnumEditor(values=['database', 'file'])),
monitor_grp),
HGroup(Item('save_mean_j', label='Save Mean J'),
Item('auto_clear_cache', label='Auto Clear Cache')),
Item('mean_j_error_type', label='Mean J Error'),
HGroup(Item('use_weighted_fit'),
Item('use_monte_carlo'),
Item('monte_carlo_ntrials',
enabled_when='object.use_monte_carlo')),
Item('predicted_j_error_type', label='Predicted J Error',
enabled_when='not (object.use_weighted_fit or object.use_monte_carlo)'),
HGroup(Item('group_positions'),
Item('object.monitor.sample',
style='readonly', label='Sample')),
Item('show_labels',
label='Display Labels',
tooltip='Display hole labels on plot'),
HGroup(UItem('plot_kind'),
Item('model_kind', label='Fit Model',
editor=EnumEditor(values=['Bowl', 'Plane']))),
# UItem('plot_kind', editor=EnumEditor(values=['Contour', 'Hole vs J']))),
contour_grp))
return v
def traits_view(self):
w_view = 350 if is_display_small() else 480
parameters_group = VGroup(
Item('_'),
HGroup(
VGroup(
Spring(),
Item('handler.omega_hinton_diagram',
style='custom',
resizable=False,
show_label=False,
width=w_view), Spring()), Spring(),
VGroup(Spring(), Item('handler.view_omega', show_label=False),
Spring())), Spring(), Item('_'), Spring(),
HGroup(
VGroup(
UItem('handler.theta_views'),
UItem('handler.theta_view',
style='custom',
resizable=False,
width=w_view), Spring()), Spring(),
VGroup(Spring(), UItem('handler.view_theta'), Spring())))
body = VGroup(Include('info_group'), parameters_group)
traits_view = View(body, buttons=[OKButton], resizable=True)
return traits_view
def _get_toggle_group(self):
g = HGroup(
# UItem('global_fit',editor=EnumEditor(name='fit_types')),
# UItem('global_error_type', editor=EnumEditor(name='error_types')),
UItem('show_all_button',
editor=ButtonEditor(label_value='show_all_label')),
UItem('use_all_button'))
return g
def traits_view(self):
v = View(
HGroup(UItem('use'), Item('center'), Item('threshold'),
UItem('color')))
return v
#============= EOF =============================================
def traits_view(self):
v = View(UItem('console',
style='custom',
editor=TextEditor(read_only=True)),
UItem('message',
editor=TextEditor(enter_set=True, auto_set=False)),
width=500,
height=400,
resizable=True)
return v
def traits_view(self):
l = VGroup(UItem('low_post_time'),
UItem('low_post_date', style='custom'))
h = VGroup(UItem('high_post_time'),
UItem('high_post_date', style='custom'))
v = okcancel_view(Item('pad', label='Pad (hrs)'),
HGroup(l, h),
width=500)
return v
def traits_view(self):
ctrl_grp = VGroup(
# HGroup(UItem('add_band')),
UItem('highlight_bands', height=115,editor=ListEditor(mutable=False,
style='custom',
editor=InstanceEditor())))
v = View(
VSplit(
ctrl_grp,
UItem('container',
editor=ComponentEditor(height=700))))
return v
def traits_view(self):
preview = CustomLabel('preview',
size_name='fontsize',
color_name='textcolor',
bgcolor_name='bgcolor')
v = View(
VGroup(HGroup(UItem('fontsize'), UItem('textcolor'),
UItem('bgcolor')),
preview,
show_border=True,
label=self.label))
return v
def traits_view(self):
l = VGroup(UItem('low_post_time'),
UItem('low_post_date', style='custom'))
h = VGroup(UItem('high_post_time'),
UItem('high_post_date', style='custom'))
v = View(UItem('pad'),
HGroup(l, h),
kind='livemodal',
width=500,
resizable=True,
buttons=['OK', 'Cancel'])
return v
def _get_fit_group(self):
cols = self._get_columns()
editor = myTableEditor(columns=cols,
sortable=False,
on_command_key=self._update_command_key)
grp = UItem('fits', style='custom', editor=editor)
return grp
def traits_view(self):
v = View(
UItem('a', editor=VideoEditor()),
# UItem('state'),
width=1200,
height=700)
return v
def traits_view(self):
contour_grp = VGroup(Item('color_map_name',
label='Color Map',
editor=EnumEditor(values=sorted(color_map_name_dict.keys()))),
Item('levels'),
visible_when='plot_kind=="Contour"')
monitor_grp=Item('monitor', editor=EnumEditor(name='monitors'))
v = View(
VGroup(HGroup(UItem('calculate_button'),
UItem('data_source', editor=EnumEditor(values=['database', 'file'])),
monitor_grp),
HGroup(Item('group_positions'), Item('object.monitor.sample', style='readonly',label='Sample')),
HGroup(UItem('plot_kind'),
Item('model_kind', label='Fit Model',
editor=EnumEditor(values=['Bowl', 'Plane']))),
# UItem('plot_kind', editor=EnumEditor(values=['Contour', 'Hole vs J']))),
contour_grp))
return v
class A(HasTraits):
text = Str
traits_view = View(UItem('text',
editor=myTextEditor(wrap=False,
editable=False,
tab_width=15,
bgcolor='#F7F6D0',
fontsize=10)),
resizable=True,
width=700)
def default_traits_view(self):
return View(
VGroup(
UItem(
"resizable_readonly_item",
resizable=True,
style="readonly",
), ),
height=_DIALOG_HEIGHT,
width=_DIALOG_WIDTH,
)
def traits_view(self):
nclasses = self.beta.shape[1]
w_table = WIDTH_CELL * nclasses
h_table = HEIGHT_CELL * nclasses
w_view = min(MAX_WIDTH, w_table + W_MARGIN)
h_view = min(MAX_HEIGHT, h_table + HEIGHT_CELL + H_MARGIN)
view = View(
VGroup(
Label('Beta parameters (prior over pi):'),
UItem('beta',
editor=TabularEditor(
adapter=Array2DAdapter(ncolumns=nclasses,
format='%.4f',
show_index=True,
count_from_one=False),
),
width = w_table,
height = HEIGHT_CELL,
padding = 10
),
Label('Alpha parameters (prior over theta):'),
UItem('alpha',
editor=TabularEditor(
adapter=Array2DAdapter(ncolumns=nclasses,
format='%.4f',
show_index=True,
count_from_one=False),
),
width = w_table,
height = h_table,
padding = 10
),
),
width = w_view,
height = h_view,
scrollable = True,
resizable = True,
buttons = ['OK', 'Cancel']
)
return view
def _get_auto_group(self):
return VGroup(
HGroup(
icon_button_editor(
'plot_button',
'refresh',
tooltip='Replot the isotope evolutions. '
'This may take awhile if many analyses are selected'),
icon_button_editor('save_event',
'database_save',
tooltip='Save fits to database'),
Item(
'auto_update',
label='Auto Plot',
tooltip=
'Should the plot refresh after each change ie. "fit" or "show". '
'It is not advisable to use this option with many analyses'
)),
HGroup(
UItem('global_fit', editor=EnumEditor(name='fit_types')),
UItem('global_error_type',
editor=EnumEditor(name='error_types'))))
def _get_fit_group(self):
cols = self._get_columns()
editor = myTableEditor(columns=cols,
selected='selected',
selection_mode='rows',
sortable=False,
edit_on_first_click=False,
clear_selection_on_dclicked=True,
on_command_key=self._update_command_key,
cell_bg_color='red',
cell_font='modern 10')
grp = UItem('fits', style='custom', editor=editor)
return grp
def traits_view(self):
self.visible = True
editor = self.editor_klass(clear='clear_event',
refresh='refresh',
font_size='font_size',
bgcolor='bgcolor',
text_width='text_width',
max_blocks=self.max_blocks)
v = View(UItem('qmessage', editor=editor),
x=self.x,
y=self.y,
width=self.width,
height=self.height,
title=self.title)
return v
def traits_view(self):
## Model view
# adjust sizes to display size
if is_display_small():
# full view size
w_view, h_view = 1024, 768
w_data_create_group = 350
w_data_info_group = 500
h_annotations_stats = 270
else:
w_view, h_view = 1300, 850
w_data_create_group = 400
w_data_info_group = 700
h_annotations_stats = 330
model_create_group = (VGroup(HGroup(
UItem(name='model_name', width=200),
UItem(name='new_model', width=100),
UItem(name='get_info_on_model', width=100, height=25),
),
label='Create new model'))
model_group = (VGroup(
model_create_group,
VGroup(
Item('model_view', style='custom', show_label=False,
width=400),
label='Model view',
),
), )
## Data view
data_create_group = VGroup(
#Label('Open annotation file:', width=800),
HGroup(
Item('annotations_file',
style='simple',
label='Open file:',
width=w_data_create_group,
height=25), UItem('new_annotations', height=25)),
label='Load/create annotations',
show_border=False,
)
data_info_group = VGroup(
Item(
'annotations_view',
style='custom',
show_label=False,
visible_when='annotations_are_defined',
width=w_data_info_group,
),
Item('annotations_stats_view',
style='custom',
show_label=False,
visible_when='annotations_are_defined',
height=h_annotations_stats),
label='Data view',
)
data_group = (VGroup(
data_create_group,
data_info_group,
), )
## (Model,Data) view
model_data_group = (
VGroup(
#Item('info_string', show_label=False, style='readonly'),
Item('log_likelihood',
label='Log likelihood',
style='readonly'),
HGroup(
Item('ml_estimate',
enabled_when='annotations_are_defined'),
Item('map_estimate',
enabled_when='annotations_are_defined'),
Item('sample_posterior_over_accuracy',
enabled_when='annotations_are_defined'),
Item('estimate_labels',
enabled_when='annotations_are_defined'),
Spring(),
Item('add_to_database',
enabled_when='annotations_are_defined'),
Item('open_database'),
show_labels=False,
),
label='Model-data view',
))
## Full view
full_view = View(
VGroup(
HGroup(model_group, data_group),
model_data_group,
),
title='PyAnno - Models of data annotations by multiple curators',
width=w_view,
height=h_view,
resizable=False)
return full_view