# Test parameters nb_step = 10 diffusion_step = 10 saved_flow = trimeshpy.data.output_test_flow saved_fib = trimeshpy.data.output_test_fib # Test functions start = time.time() #points = tri_mesh_flow.laplacian_smooth(nb_step, diffusion_step, l2_dist_weighted=False, area_weighted=False, backward_step=False, flow_file=saved_flow) #points = tri_mesh_flow.curvature_normal_smooth(nb_step, diffusion_step, area_weighted=True, backward_step=True, flow_file=saved_flow) #points = tri_mesh_flow.positive_curvature_normal_smooth(nb_step, diffusion_step, area_weighted=True, backward_step=True, flow_file=saved_flow) points = tri_mesh_flow.mass_stiffness_smooth(nb_step, diffusion_step, flow_file=saved_flow) #points = tri_mesh_flow.positive_mass_stiffness_smooth(nb_step, diffusion_step, flow_file=saved_flow) #points = tri_mesh_flow.volume_mass_stiffness_smooth(nb_step, diffusion_step, flow_file=saved_flow) stop = time.time() print (stop - start) lines = np.memmap(saved_flow, dtype=np.float64, mode='r', shape=(nb_step, vertices.shape[0], vertices.shape[1])) tri_mesh_flow.set_vertices_flow(np.array(lines)) tri_mesh_flow.display(display_name="Trimeshpy: Flow resulting surface") tri_mesh_flow.display_vertices_flow(display_name="Trimeshpy: Flow visualization") """ ### save fibers in .fib normal #line_to_save = streamline.compress_streamlines(np.swapaxes(lines, 0, 1)) line_to_save = np.swapaxes(lines, 0, 1) lines_polydata = lines_to_vtk_polydata(line_to_save, None, np.float32) save_polydata(lines_polydata, saved_fib, True) """
brain_file_name = "../data/brain_mesh/100307_smooth_lh.vtk" # Init Sphere s_mesh = TriMesh_Vtk(sphere_file_name, None) s_vshape0 = s_mesh.get_nb_vertices() # Display sphere sphere_tmf = TriMeshFlow_Vtk(s_mesh.get_triangles(), s_mesh.get_vertices()) sphere_tmf.display() # Umbrella sphere sphere_tmf.laplacian_smooth(100, 1, l2_dist_weighted=False, area_weighted=False, backward_step=False, flow_file=saved_flow) sphere_tmf.set_vertices_flow_from_memmap(saved_flow, 100, s_vshape0) sphere_tmf.display() sphere_tmf.display_vertices_flow() # L2 weighted sphere_tmf.set_vertices_flow(s_mesh.get_vertices()) sphere_tmf.laplacian_smooth(100, 1, l2_dist_weighted=True, area_weighted=False, backward_step=False, flow_file=saved_flow) sphere_tmf.set_vertices_flow_from_memmap(saved_flow, 100, s_vshape0) sphere_tmf.display() sphere_tmf.display_vertices_flow() # L2 weighted implicit step sphere_tmf.set_vertices_flow(s_mesh.get_vertices()) sphere_tmf.laplacian_smooth(100, 1, l2_dist_weighted=True, area_weighted=False, backward_step=True, flow_file=saved_flow) sphere_tmf.set_vertices_flow_from_memmap(saved_flow, 100, s_vshape0) sphere_tmf.display() sphere_tmf.display_vertices_flow()
# Display sphere
sphere_tmf = TriMeshFlow_Vtk(s_mesh.get_triangles(), s_mesh.get_vertices())
sphere_tmf.display()
NB_STEP_SPHERE = 100
# Umbrella sphere
sphere_tmf.laplacian_smooth(NB_STEP_SPHERE,
1,
l2_dist_weighted=False,
area_weighted=False,
backward_step=False,
flow_file=trimeshpy.data.output_test_flow)
sphere_tmf.set_vertices_flow_from_memmap(trimeshpy.data.output_test_flow,
NB_STEP_SPHERE, s_vshape0)
sphere_tmf.display()
sphere_tmf.display_vertices_flow()
# L2 weighted
sphere_tmf.set_vertices_flow(s_mesh.get_vertices())
sphere_tmf.laplacian_smooth(NB_STEP_SPHERE,
1,
l2_dist_weighted=True,
area_weighted=False,
backward_step=False,
flow_file=trimeshpy.data.output_test_flow)
sphere_tmf.set_vertices_flow_from_memmap(trimeshpy.data.output_test_flow,
NB_STEP_SPHERE, s_vshape0)
sphere_tmf.display()
sphere_tmf.display_vertices_flow()
# L2 weighted implicit step